RNA id: AMCG00014418


Basic Information

Item Value
RNA id AMCG00014418
length 1701
RNA type mRNA
GC content 0.55
exon number 13
gene id AMCG00014418
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 13361748 ~ 13371376 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGggGGTCTGCATTGATGGTCTTGGGACCTTCACCTTCTCTCAGAAGATTGATACGGGAAGTCAGAGACCCGTATTTCAACTCTCTGAAAAGGTTTCCCAAAAGCATGGCTTAAAGCAGGTCAAGATGCTTGCGGCAGGTGACGTGCCGGTGGTCCCTCTGAACTACACGGCGCTGTCATGGGGGACCCCATTCGATCGGGACACGGTTGAGCTCTGCATTCATGagactctgctgctgctgcaccgCTGTGCTGCATCCCAGCGCAGCACCCACTTCAACTTCCCTGGGATCGGTGTGCTGTCTCTGTGCCAGGGCACCGTCAAGATGAGGTTCTACAAGGACTTTCTCAAAGCCATGGACGGCAGTGGCAACCTCACACAGGCCTCTCCAAACGAGGTGAGGCAGAGGATCCGCAGACCAGCTTGTCAGCCGGCTCGAATCAACATTCAcgaggagctggagaggagcCCGAAGTCCACCGCAGCACATGAGAGGCAGGCAGACAAAGGgCAGAGACTCGGCTCTTCTGTATCATCTCCGTGTCGTTTCCCTAAGCTAGAGCAGAAGGCACTGGTGTCCAGTCCTCCCGTCCCCAGGGGCTCTGAATGTGCCAGCCATGACCACGCAGGACAGGAGCTGTGCTACGTGTGTATGCAGAGGGCCCAGCGCAATGTGCCCTTCTacgtgagagaggagaggaagaggcagGAGAAGGAAGATGAGAGACTGCTGATGATCAAGCAGCAACAGGAACTGCTAGAGGAACTACAGCAAGAGCAGGATAAACTACAGGCCGCCAGAGAACAAGCCCAGAAGGTTGCTGCCATCAATCTGAGCCTCTCTGAAGCCGCAAAAGGGAGGAAGCCTGCGAGCTCCACGCAGAACTCCTTCATCTTCCCGAATCGGCCCCTGACACCCCCACACGACCCAAAGCAGCAGCACTACCACCGGAAGCTGAATGAACAGATCAGGCAGAGGAAGGAAATGGAAGCCCAGAGGAGGAAAGACAAGGAGCTCAGAGAACGGCGCCGACAGGTTCAGCTTGCTCAGGAaATTGCAGCCCTGAAAGAGCAGAATTGGAAGAAGAAAGCTGAGGAAATCCAAAAGTACAACAAGGCATTGGATATGCAGATTGAGCAGAAAAGGCAGAGAGAAGGGATACCAAACAGGATCAGCGTCAGGTTTCCGAGCATCCACCCAGAGAGGGTGAAGGTAAAACCATCAGGTCTACCCACCCACGAGACAGATTCAGAGGGGCTCGTCTTTGGGGCCTATGACACCACCTACCAGGATCTGCAGGAGCAGAGGAGGCGCGCACGCCAGCTGCAGAAGGAGCATCTGGAGACGGCCACCCAAAAGAAGAGAGAAGCAGTCTTCAACCACATCCTGGAGCAGAAGAAGGAGCAGGAGGTGTTCAAAAGGACCAGGAAGGAGCTGGAAGCAGATCAGATCGCTCACCATGAGAAGCTCCACAGCATGCGCGTGTGTCTGGAGGACGACTGGGCCCACAGCAAAAAAGCCAAATGCGTCAGAAATCAGGAGGAGCACAGTTATATTAGGTCTGGCAGCCGTCAGCTATTGGAACAGTGTGAGAAGTACCGCCGCTGCTACCAGTGTAAGAGACGCAGCACCAACCATGGAGAGTCCAACCTCTTTATGCTCTCCAAATACACCCCTGGATCATGCCTGATGAATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87406 lncRNA upstream 26563 13334214 ~ 13335185 (+) True G69959
TU87357 lncRNA upstream 110016 13246309 ~ 13251732 (+) True AMCG00014407
TU87358 lncRNA upstream 110016 13246309 ~ 13251732 (+) False AMCG00014407
TU87223 lncRNA upstream 379314 12980259 ~ 12982434 (+) True G69833
TU87160 lncRNA upstream 761435 12600104 ~ 12600313 (+) True G69778
TU87409 lncRNA downstream 6158 13377534 ~ 13380404 (+) True G69961
TU87516 lncRNA downstream 311667 13683043 ~ 13684492 (+) False AMCG00014423
TU87518 lncRNA downstream 323439 13694815 ~ 13696871 (+) True G70054
TU87727 lncRNA downstream 796070 14167446 ~ 14171012 (+) True G70221
TU87766 lncRNA downstream 822403 14193779 ~ 14194433 (+) False AMCG00014456
AMCG00014419 mRNA upstream 1728 13340187 ~ 13360020 (+) True AMCG00014419
AMCG00014415 mRNA upstream 30658 13323367 ~ 13331090 (+) True AMCG00014415
AMCG00014416 mRNA upstream 59875 13291329 ~ 13301873 (+) True AMCG00014416
AMCG00014417 mRNA upstream 77454 13276573 ~ 13284294 (+) True AMCG00014417
AMCG00014414 mRNA upstream 87445 13266017 ~ 13274303 (+) True AMCG00014414
AMCG00014420 mRNA downstream 78722 13450098 ~ 13451219 (+) True AMCG00014420
AMCG00014422 mRNA downstream 219544 13590920 ~ 13615018 (+) True AMCG00014422
AMCG00014421 mRNA downstream 259291 13630667 ~ 13650074 (+) True AMCG00014421
AMCG00014423 mRNA downstream 283862 13655238 ~ 13689188 (+) True AMCG00014423
AMCG00014424 mRNA downstream 372745 13744121 ~ 13747498 (+) True AMCG00014424
TU86705 other upstream 3353100 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 5945154 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 6012281 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 8709784 4649200 ~ 4651964 (+) True G68475
TU87778 other downstream 965482 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 2304255 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 2304255 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 2758149 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 3094305 16465681 ~ 16469113 (+) False AMCG00014525

Expression Profile