RNA id: AMCG00014419


Basic Information

Item Value
RNA id AMCG00014419
length 1884
RNA type mRNA
GC content 0.55
exon number 11
gene id AMCG00014419
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 13340187 ~ 13360020 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGGTTTATATTCATGGACTTGGGACCTTCACATGGTCTCAGCAGAAGATTGATATGGGAAATAAGGTTATTTTAATTCAGAGACCAATATTTCAACTGTCTGAAAAGGTTTCCCAAAAGCATGGCTTAAAGCAGGTCAAGATGCTTGCGGCAGGCGACGTGCCGGTGGTCCCTCTGAACTACACGGCGCTGTCATGGGGGACCCCATTCGATCGGGACACAGTGGAGCGCTGCATACATGagactctgctgctgctgtaccGCTGCATTGCATCCCAGCGCAGCACCCACTTCAACTTCCACGGCATCGGTGTGCTGTCTCTGCGCCAGGGCACCGCCAAGATGAGGTTCTACAAGGACTTTCTCAATGCCATGGATGGCAGTGGCAACCTCACACAGGCCTTCCTAAATTTGAGGGAACCATCCAGTGAACAGGGAATGCAGCCGATCACAGAGGAGCGAGTGACAGTGGATCAGGAGCAGCACAAGCTCCCCACTGAAGTCGCCTCTCCCAGACCCCTGGAGTCAGCTGTTACGGAGGCGCAGGGCCCTAGAGAGCCACAGGAGATGAGGCAGAGGATCCGCAGACCGGCGCTGCAGCCGGGTCGAGTGACTGGAATCAGCATTCACGAGGAGCTGGACAGGAGTCTGATGCCCACCACAGCAGATGAGAGGCAGGCAGACAAAGGgCGGAGACTTGGCTTTTCTTTACCATCTCGGGGTCATGTCCCTGAGCTGGAGCAGAAGGCAAACACTCTCCTGGTGTCCAGTCCTCCCGTCCCCCTGGGCTCTGAGTGTGCTGACCATGACCATGCAGGACAGGTGAGTACCAGTGGCAATAGGCTGTGCTATGAAGAGTGCAGCAGTGAGACGTGTGGCAAGCTAACGTCCTGTATCATCCAGGAGCTGTGCTACGTGTGTATGCAGAGGGCCCAGCGCAATGTGCCCGTCTACCTGagtgaggagaggaggaggcaggAGAAGGAAGATGAGAGACTGCTGATGCTCCACCAGCAACAGAAAGAGCAAGAGGAACTGCAGAAAGAGCAGGTCCGACTGCCACCCTGTCTCTTGCCCATCACTGACATCTCAAGGATAGCTGGACTACAGGAcaccagagaaaaaaaacaggagattGCTGCGTTCAATCTGGGCGTCTCTGAAGCTACAAAAGGGAGGAAGCCTGCGAGCTCCATGCAGGTTCATAACTCCTACATCTTCCAGAATCGGCCCCCGACACCCCCCCACCAGCCCAAGCAGCGGCGCTACCTGCAGGAGCTGAGCGAGCAGATCAGCCAGAGAAAGGAGACAGAGGCCCAGGGGAGAAAAAGCCAGGAGCTCAGAGATCATCTCCGACAGGTTCAGCTTGCTCAGGAAATTGCAGCCCTGAAGGAGCAGAATTGGAAGAAGAAAGCTGAGCAAATCCAAAACTACCACAAGGCATTGGATATGCAGGTGAAGGTAAAACCATCAGGTCTGCCCGCCTGCGAGTCAGATTCAGAGGGGCTCATCTTTGGGGCCTTCGACTCCTCCAACAAGAATCTGCAGGAGCAGAGGAAGCGTGCACACCAGCTGTACCAGGAGCAGCTGGAGACGGCCACCCAAAAGAAGAGAGAAGCACTCTTCAACCACATCCTGGAGCAGAAGAAGGAGCAGGAGGTGCTCAAAAGGACCAGGAAGGAGCTGGTAGCAGATCGGATCGCTCGCCATGAGAAGCTCCACAGCATGCGGGCGTCTCTGGAAGACAACTGGGCCCACAGCGCCGATGCCAAGTGCTTTagagaacaggaggagcacAGTTTTATCAGAAGGGGTTTCCACAAAGGATCTCCAGCTGCCAAAACTGGCCACAGATACATCCAGTGTGGCCCCGATCCCGAGCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87406 lncRNA upstream 5002 13334214 ~ 13335185 (+) True G69959
TU87357 lncRNA upstream 88455 13246309 ~ 13251732 (+) True AMCG00014407
TU87358 lncRNA upstream 88455 13246309 ~ 13251732 (+) False AMCG00014407
TU87223 lncRNA upstream 357753 12980259 ~ 12982434 (+) True G69833
TU87160 lncRNA upstream 739874 12600104 ~ 12600313 (+) True G69778
TU87409 lncRNA downstream 17514 13377534 ~ 13380404 (+) True G69961
TU87516 lncRNA downstream 323023 13683043 ~ 13684492 (+) False AMCG00014423
TU87518 lncRNA downstream 334795 13694815 ~ 13696871 (+) True G70054
TU87727 lncRNA downstream 807426 14167446 ~ 14171012 (+) True G70221
TU87766 lncRNA downstream 833759 14193779 ~ 14194433 (+) False AMCG00014456
AMCG00014415 mRNA upstream 9097 13323367 ~ 13331090 (+) True AMCG00014415
AMCG00014416 mRNA upstream 38314 13291329 ~ 13301873 (+) True AMCG00014416
AMCG00014417 mRNA upstream 55893 13276573 ~ 13284294 (+) True AMCG00014417
AMCG00014414 mRNA upstream 65884 13266017 ~ 13274303 (+) True AMCG00014414
AMCG00014407 mRNA upstream 89907 13246350 ~ 13250280 (+) False AMCG00014407
AMCG00014418 mRNA downstream 1728 13361748 ~ 13371376 (+) True AMCG00014418
AMCG00014420 mRNA downstream 90078 13450098 ~ 13451219 (+) True AMCG00014420
AMCG00014422 mRNA downstream 230900 13590920 ~ 13615018 (+) True AMCG00014422
AMCG00014421 mRNA downstream 270647 13630667 ~ 13650074 (+) True AMCG00014421
AMCG00014423 mRNA downstream 295218 13655238 ~ 13689188 (+) True AMCG00014423
TU86705 other upstream 3331539 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 5923593 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 5990720 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 8688223 4649200 ~ 4651964 (+) True G68475
TU87778 other downstream 976838 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 2315611 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 2315611 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 2769505 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 3105661 16465681 ~ 16469113 (+) False AMCG00014525

Expression Profile