RNA id: AMCG00014421


Basic Information

Item Value
RNA id AMCG00014421
length 3447
RNA type mRNA
GC content 0.48
exon number 5
gene id AMCG00014421
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 13630667 ~ 13650074 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCGAAGGCTGTGACAGGTGGTGTTGGCATGGCGTCTCACGATGACAGTGAGCAGGTGGTACCTGAGGAAGAGGACAGTGCGAGTGTGCTCTCAGTGCAGGCCAGATACCTCCGCAGCTCCTCTCCCAGCAGGTTCTCCATTATGTCTGACACGGACACCGAGAGCATTTTCATGGAGCCAATTCACCTGTCATCTGCTGTGGCTGCCAAACAGATCATAAATGAAGAGTTGAAACCCAAGGAGGTAAGAGTGGAGACCATGACTGAGGGTATGATGGAGTCAGCAGAGCAGCTTCTGGTGGAAGACCTCTACAACAGGGTGAAGGATATGATGGATGACAGCAGCCCCTTCAACACTCCCTGTATCCTGGACATCCAGAGGGCTCTCACCCAGGATAAGCTGGAAGCACCCCTCAACCCTGTGGATGAAGTTTGGCCCAACATCTTCATTGCTGAGAAggCTGTGGCTGTGAACAAATCCAGGCTGAAGAGACTGGGGATCACTCACATCCTTAACTCAGCCCACGGCACTGGGGTGTACACAGGAGCTGACTTCTACTCTGGCATGGATATCCAGTACATGGGCATTGAGGTGGATGACTTCCCAGAGATGGACATCTCCCAGCATTTCCGTCCAGCTGCAGAGTTCCTGGATGAGGCTCTGCTAACCCACAGAGGTAAAGTCCTCGTGGACTCGATGATGGGGGTGAGCCGGTCTGCAGTGCTTGTGGCTGCCTACTTGATGATCTTTCACCACATGACTATAATGGAAGCCTTGATGGCTATGAGGAAGAAGCGCCCCATCAACCCAAACGAGGGCTTTGTGAAGCAGCTCAGGGAGCTAAACGAGACCCTCCTTGAAGAACGGGGAGGTTTGGAGGATGACGACAGTGACACTCTGAGCCAGAGCTCTGTCATTGAGGCTAAAACCCATGCTCTCAAGGCAGAAGAAGGGGAATTAGGGAGTATTATGGGAGCAAAGGTCCACTCCATCATGGTGGAGGAAGAGGACAAGATGAGCACTCTGAGTAGTGTCATGACAGCAGCAGCGAAGGCCAGTGTGGCTTCCAAAAGACCCACACTGATagatgaggatgaggaggatAAGTTGTATGAGGAATGGAGGAAGAAACAAGGCTTGCCACCTATTGAGAAACCAAAATCGAATGAGGGTAAGATACTCAGGCTGCCagaaggggaggaagaggaagatgtGGAACAGGTGATTAGGGAGTGGCAACGGAGAAATGAGAAGTACCAATCAGAGGACTGGTGGAAGGCTCAGCTCATGTGTGAAGATGAAGAGTCTCTCCTGGGAGGCAGCTCTTTTTCTGCCAATGGCCATGATGATGCAGAAAGTGTCAACAGTATGGACATCCGGGCGCTAAAAGAACGTTTAGCAGCCAGTGGCATTGGTAGAGTCAGAAGTGATTCAATCTCGACTGAAGACAGTACAGCAGATATTTGGACAAAAAGACTCCGGGAGATTGAAGAGCAGGCCGCAGCGAGGTATGGCGACAAAGGCAAGGACACCTGTGAGAATGGAAGCAGAGAGAAGGACATTGACGAAGAGAGCCTTTTTTCAGAAACCAGCTCTTTGTACAACttctgcaagaaaaataaagacaagctCACGCCTCTAGAGAGGTGGAGGATCAAAAGGATCCAGTTTGGATGGAACAAGAAGGATGCCGAAGGTGAGAAGGCAGAAAGCAACAGTGTGCACGGGGAAGGGGAAGAAACTAAAGTAACTCCACAAGATGTGAACCTGACCGCCTACCAGAGCTGGAAACTAAAACAGCAAAAGAAACATGGCACTGAAAACAAGGATGAAATTGTGGAGCTGAGCAAGGGAGAGGATACGGCTTCCATCAAGAGAAAGCAAAGACGAGCTGAGCTCTTAGAGCGTTCCCGGCAGACATTGGAGGAGAGCCAGTCCATCTGTGGGTGGGACACAGAGAGTTCCATGAGTGGCAGCATCCCACTATCTGCAATTTGGCCTAACATGTCCGTGAGGAGTGTCAATGATGATACCACATCAGTGCTGAGCATGCAGAGCAACAGATCATCTGTTTCTCAGGCCAGGAGTTTGCAAGGCCTTCCCCAGTCCCCAATGGTTCCCTTGCCAAACATTCAGGTCGGCAATGATGATACCGTTTCCCTGGCGAGCATCCAAAACTGGATTGCCAATGTGGTAACTGAAACTAtcattcaaaagcaaaatgaaatgaTGATGCAAGGCAGCCTTCCCCCAAGTCATAGTCCATCTGTCATGAGTATGGGAGCCAGATCTGGTGCTGCTTTAAAATATGCAGATGATGATAAAATATCACTTCTGAGCATGCAAAGTGGAACATCTCACACAAGTTCCATATCACATCAGAGAGAAATACGAAGTTCTGACAGCCACTCAGCAATGTCATGTGGCAGCTTATCTAACATAAAGTCTGAAGGATATGGTGgctccaaaaacaaaattacacgCACCAGCAAGCCCCTCTACAGCCTGTTCGCAGATGATGTTGACCTCAAGAAGTTGGACAAGAAAGACAAGGaaatgaaatctgaaatgaGAGGCAAAATGTCTGTATATGAGCTAGAAAAAATAGCTGCTGATAACAAGCGCAGCACCTTGTTCAAGAAAAAGAAGGCAAAAGATGACAGTGAAGATGAGGATGACACAGCTAGAACCTCCAGGAAATTATCTTCCACCAACGTTGACAGATCTGATAATGTATCCAGTATTTCTGGGCTCTCTGCAAGATCCATCACAGAAACCCCAGACAAATCTCCCAGCATTAACAAGTGGCTCAGTGACGTCAACGCTCCCTCCAGATACTCTAAATCTTACATTGGAGAAAGCTCTGAGGCTAAATTCTCAAGATCATCATACTCCAAAGGAGACACAACTGAGTCATCAGATTTCATGTCCTCCAGACAAAGAAAGGAATTCTCTGGAAGCTCCTTCACCAGTCCAGACAACGGTTACAAAACAATATCACGGTTCTCTTCTGCGACATCTTCAAAAACTGCAGATTTATATTCCTCCAGCAGGTCCAGGGCTGACGATTATGAAAATCACAGAGAAACAAGTCCAGAACTGTATGGTACTATGAGATCACCTTCACCAGCCGCTGACTTGACTGaaacacaggaacacagaaCACGGGCCTTCTACTccactgaagaagaagaagagttTGAAGATAAAGAACTATTTGAATATGGAGCTAAGAGAAAATTCACCCAGAGTTTTTCAAGGTTCGAAGATAGTGAtggagaaataaagaaaagtggCAGTGATGAGGAGGAAGACGCATCTATAACCAGGTGGTCCAGGATAAGATCCAAACCCAAAGAAGATGAGGAAGATGATGATGAGGTAATTGCTGCTTGGAGGAGTCACCAGGAGTCAAAATCAAGGACTCAAAGAAGAAGAGAAATATAA

Function

GO: NA

KEGG:

id description
K14165 K14165; atypical dual specificity phosphatase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87409 lncRNA upstream 250263 13377534 ~ 13380404 (+) True G69961
TU87408 lncRNA upstream 251074 13352333 ~ 13379593 (+) False G69961
TU87406 lncRNA upstream 295482 13334214 ~ 13335185 (+) True G69959
TU87357 lncRNA upstream 378935 13246309 ~ 13251732 (+) True AMCG00014407
TU87516 lncRNA downstream 32969 13683043 ~ 13684492 (+) False AMCG00014423
TU87518 lncRNA downstream 44741 13694815 ~ 13696871 (+) True G70054
TU87727 lncRNA downstream 517372 14167446 ~ 14171012 (+) True G70221
TU87766 lncRNA downstream 543705 14193779 ~ 14194433 (+) False AMCG00014456
TU87767 lncRNA downstream 547906 14197980 ~ 14199308 (+) False AMCG00014456
AMCG00014422 mRNA upstream 15649 13590920 ~ 13615018 (+) True AMCG00014422
AMCG00014420 mRNA upstream 179448 13450098 ~ 13451219 (+) True AMCG00014420
AMCG00014418 mRNA upstream 259291 13361748 ~ 13371376 (+) True AMCG00014418
AMCG00014419 mRNA upstream 270647 13340187 ~ 13360020 (+) True AMCG00014419
AMCG00014415 mRNA upstream 299577 13323367 ~ 13331090 (+) True AMCG00014415
AMCG00014423 mRNA downstream 5164 13655238 ~ 13689188 (+) True AMCG00014423
AMCG00014424 mRNA downstream 94047 13744121 ~ 13747498 (+) True AMCG00014424
AMCG00014426 mRNA downstream 99599 13749673 ~ 13788076 (+) True AMCG00014426
AMCG00014425 mRNA downstream 141075 13791149 ~ 13813879 (+) True AMCG00014425
AMCG00014427 mRNA downstream 170282 13820356 ~ 13827551 (+) True AMCG00014427
TU86705 other upstream 3622019 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 6214073 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 6281200 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 8978703 4649200 ~ 4651964 (+) True G68475
TU87778 other downstream 686784 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 2025557 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 2025557 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 2479451 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 2815607 16465681 ~ 16469113 (+) False AMCG00014525

Expression Profile