RNA id: AMCG00014422


Basic Information

Item Value
RNA id AMCG00014422
length 1742
RNA type mRNA
GC content 0.51
exon number 8
gene id AMCG00014422
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 13590920 ~ 13615018 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GACAGAATTGTAAGCTCACCATGATCCTCAGTCTACTTCTTCTCACCCTGGCCTGTATCAATGCGAATGCAGAGCTTCAGCCTTCTGGATTTAAAGAAGATACTGCTCTGCTGCCTGCCAAACCCTACATCGAGTCCTGCCGCTCCCCGAACCAGGAGACGTTCACCTGCTGGTGGAGCACCGGGGACCGAGGCGTCGAGAGCACCGGCAACACTACCTACACCTTTACCTACACTGAGGAATATGGGCCAAAGAAAGAGTGTCCAGACTATGTGACGGGGGGCAAAAACAGCTGCTACTTCAACAGCGCTCACACACAGGTGTGGGTAGACTACTGCATCAACGTGACGGCGACAAACCGCTACGGCTCGCAGACCTCTGAAGAGTTCTGCCTGGATGTGGCTGATATAGTTGAGCCTGACCCACCATTCAACCTGACACACTGGTTTGTCAACAGCAGTCAGGAGGGCTCGGGGCAGACAGTGGTGTTGTCGTGGCATTACCCCACCACGGCAGATGTGCAGGTCGGCTGGCTGACGCTCGTTTATGAAGTGCAGTTCCGTCGCAGCACTGAGCCCAACAACTGGAAGGTAAAAGGCATCCTGAGAGAGCAGAGGCTAGAGGTCCTGGACCTGCCAGCAGGGAGCTACATATTTCAAGTGCGCTGCAAATCCAGGAACTCGGGGCTGTGGAGCCAGTGGAGCAGCCCTCTCACTGTGACTGTCCCTCCCACACAGGGCATAGATAAGATGCTGTCATTGATTCTAGTCTCTGTAGTTGGCATTATGGCTTTCTTGATCATTGCTTTTGGTGTGATACCTCGGAGAAAAAGGATTAAAGCCTTTCTCTTGCCTCCGATTCCTAAACCCAGAATCAGAGGGATTGATCCAATGCTTTTGAAGAAGGGCAAGATGGATGAAATTGACCGTCTATTTACCTCCTTCCATGGATACAACCCCCCTGAGTACAAGGAGGAGGCCTGGTTTGAGGTGAGCACAGATGAGGGGCTTTCCTTCAAAGACAGTCCTCTGGCCAAGATggtgaaggaggagagagagaggacgccCAGCCTTCAGCCCCAGAACCAACCTTTCTTGGTTGTTGGAGCAAAGGAGGAGCAGATGCTATTGCACAAGCTGGAGGGTTCCAGTAGTATTGAAGCAGGCCAAGGAAGCCTCAGCAAGGAAGAGCCAAGTCCCTTGAATCCAAATGACACCCCCAACTGGAGCAGGCAGACCCAGGTGGCCATGGAGAAATCCTTTGAAACCATCACCAACCCCATGGGCTACAGCATCACACTCAGTCCCACCAAAACCTTGAAGGCCAGCCAGGATTTTTACACCTGTGTAAACACAGTGAACAACAATGGGACAATCCAGCTTGTTCCCTGCTTTCCAGACCATGGGCAAAAATCACCCTATCTGGAGCTACGGGATGCTTCTGGAAATGCTGACAAGGCAAAGCAGCAAGAGTTGAAAAATATAGCAGACAAAAACAATCAGATGCAGAGCAAGCCCAAGCCCCACAATCTGGCATCTAACAAACTCAAAGTTGGGGCTGCAGAAGAACGAGAAAGTTACACTACAGTGGAGTCTCTGCATCTTCAGCAAGGTCTTTTTGCGTGTTCGGTTTCGCCTGAGGAGAAATCGCTGTACAAGTTCAACCACTGCAATGACTACTTATGCATAGAGCAGAATGAACTTGCAGTGCCTTTGCTGCCAGCACCCATAATGAAGAAGATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87409 lncRNA upstream 210516 13377534 ~ 13380404 (+) True G69961
TU87408 lncRNA upstream 211327 13352333 ~ 13379593 (+) False G69961
TU87406 lncRNA upstream 255735 13334214 ~ 13335185 (+) True G69959
TU87357 lncRNA upstream 339188 13246309 ~ 13251732 (+) True AMCG00014407
TU87516 lncRNA downstream 68025 13683043 ~ 13684492 (+) False AMCG00014423
TU87518 lncRNA downstream 79797 13694815 ~ 13696871 (+) True G70054
TU87727 lncRNA downstream 552428 14167446 ~ 14171012 (+) True G70221
TU87766 lncRNA downstream 578761 14193779 ~ 14194433 (+) False AMCG00014456
TU87767 lncRNA downstream 582962 14197980 ~ 14199308 (+) False AMCG00014456
AMCG00014420 mRNA upstream 139701 13450098 ~ 13451219 (+) True AMCG00014420
AMCG00014418 mRNA upstream 219544 13361748 ~ 13371376 (+) True AMCG00014418
AMCG00014419 mRNA upstream 230900 13340187 ~ 13360020 (+) True AMCG00014419
AMCG00014415 mRNA upstream 259830 13323367 ~ 13331090 (+) True AMCG00014415
AMCG00014416 mRNA upstream 289047 13291329 ~ 13301873 (+) True AMCG00014416
AMCG00014421 mRNA downstream 15649 13630667 ~ 13650074 (+) True AMCG00014421
AMCG00014423 mRNA downstream 40220 13655238 ~ 13689188 (+) True AMCG00014423
AMCG00014424 mRNA downstream 129103 13744121 ~ 13747498 (+) True AMCG00014424
AMCG00014426 mRNA downstream 134655 13749673 ~ 13788076 (+) True AMCG00014426
AMCG00014425 mRNA downstream 176131 13791149 ~ 13813879 (+) True AMCG00014425
TU86705 other upstream 3582272 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 6174326 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 6241453 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 8938956 4649200 ~ 4651964 (+) True G68475
TU87778 other downstream 721840 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 2060613 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 2060613 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 2514507 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 2850663 16465681 ~ 16469113 (+) False AMCG00014525

Expression Profile