RNA id: AMCG00014423


Basic Information

Item Value
RNA id AMCG00014423
length 2052
RNA type mRNA
GC content 0.54
exon number 15
gene id AMCG00014423
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 13655238 ~ 13689188 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atggcGGACGGAGGAGCAGCGAGTCAAGATGAGAGTTCAGGACCAGAATCAAGAATGAGTAATCCGTCAGAAACCAATAAACCTTCAATGGAGAGTGGGGATAGCAGCACAGGTGCCCAAACAAATGGACTCGACTTTCAGAGGCAGTCTGTGCAAACCAGTGCAATCACAAATGCACATGCACAGGCCTTACTTCACCAGGTCCATCTTGCTGGAGCAAGTTTACAGGCTGCTTCTCAGACAGTAAATTTACAGTCTAAAACAGAAGAATCTGGTGATTCTCAAGTCTCAAGCCAGCCCTCAGTACAAGGGGTGCTTCCACAGACTCAGCTCATGTTGGCTGGAGGACAGATCACTGGATTGACTCTGACGCCAGCACAGCAGCAGTTGTTAATTCAACAAGCACAGGCTCAGCTGCTGGCAGCAGCAGTGCAGCACTCGGCCAACCAGCAGCATAACACCACTGGGGCTACAATCTCTGCGTCCGCAGCAACTCCAATCACACAAATCCCGATTTCACAGCCCATCCAAATAACGCCTgatttgcagcagctgcagcagttACAACAGCAAAACCTGAACCTACAGCAGTTCGTGCTAGTGCAGCCCGGCCACCCGATCGCAACCCAGCTGCAGCCGGCGCAGTTCATTATATCACAGACGACGCAGGGACAGTCGGGTCTCCTGCAAGCTCAAAATCTTTTAACTCAACTACCTCAACAAAGCCAAGCCAACCTCCTGCAGACACAGCCAAGCATCACCCTCACTACACAGGGTGATGTTGGGCTTGCTATGGGAAAACTGTATGGAAATGATTTCAGCCAAACAACAATTTCTCGCTTTGAAGCCTTGAATCTcagctttaaaaacatgtgCAAGCTTAAACCATTGCTCGAAAAGTGGCTAAACGATGCAGAGAATTTGACTTCTGACCAAGCTTTGTCCAGCCCAAGTGCCCTGAATTCCCCTGGACTGGGAATAGAGGGGCTGAATCGCAGGAGGAAGAAACGCACCAGCATTGAGACCAACATTAGAGTGGCCTTAGAAAAGAGCTTTCTGGAGAACCAAAAACCTACCTCTGAGGAGATCACAATGATAGCTGACCAGCTGAACATGGAGAAGGAGGTAATCCGAGTCTGGTTCTGTAATCGACGGCAGAAGGAGAAGAGGATCAACCCACCTAGCAGTGGCAGTTCGAGCAGCACTCCTATCAAAGCAATCTTCCCCACATCCACCCCAATGGTGCCGAGCACTGCTAGCCTTGTGACCAGTAATACACCGACTACATTGACTGTAAACCCAGTTCTGCCTATAACAAGCACCGCTGTAACTAACCTTGGCTTCACAGGCACAACGGGCATCGGGGCAGCCACCACAAACACTGCATCGGTCATCTCGACCACTCCTGTAGCTTCCTCCGTGACCTCGCCTTCACTGAGCCCTTCCCCCACATTACACACCTCTGTCACAGAGTCCCCGAGCACGCAGGAGACCAGCACCACCACGCAGACACCCTGCTCCCTGGCCTCCTCTCTGAGCACCGGCCAGGTGATGGTCACAGCGTCAGGACTGTCGGCGGCACTGCAAGGGGCGACGCAGCTCCCTACCAACGCAGGACTTGCAGCGATGGCCGCAGCAGCTGGTCTCAATCCTGGTCTTATGGCATCCTCTCAGTTCGCGCCGGGTGGTGCCTTACTTAGCCTCAATCCAGGAACCCTCGGCAGTGCTTTAAGTCCAGCTTTGATGAGTAACAGCACTCTGGCAACTATTCAAGCTCTTGCATCTAGTGGGACTCTTCCAATAACCTCTCTGGATGCCAGTGGAAACCTGTTGTTTGCGAACGCCGGTGCCGGCCCGCTGTTCCTCAACCCCCAGAACCTCTCGCTGCTCACCAGCAACCCGGTCAGCCTGGTGTCTGCCGCGGCGGCCTCCGCAGGGGCCTCGGCTCAGGCGCTCAATCTCCAGGTCACTTCCGCAGCTGCCGAGTCCAACCAGAACGCGGTCACCTCCGCTGCGGCAGCCACCATCACTACTGCCTCCAAGGCTCAATGA

Function

GO: NA

KEGG:

id description
K09364 POU2F, OTF; POU domain transcription factor, class 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87409 lncRNA upstream 274834 13377534 ~ 13380404 (+) True G69961
TU87408 lncRNA upstream 275645 13352333 ~ 13379593 (+) False G69961
TU87406 lncRNA upstream 320053 13334214 ~ 13335185 (+) True G69959
TU87357 lncRNA upstream 403506 13246309 ~ 13251732 (+) True AMCG00014407
TU87518 lncRNA downstream 5627 13694815 ~ 13696871 (+) True G70054
TU87727 lncRNA downstream 478258 14167446 ~ 14171012 (+) True G70221
TU87766 lncRNA downstream 504591 14193779 ~ 14194433 (+) False AMCG00014456
TU87767 lncRNA downstream 508792 14197980 ~ 14199308 (+) False AMCG00014456
TU87784 lncRNA downstream 777516 14466704 ~ 14467744 (+) True G70271
AMCG00014421 mRNA upstream 5164 13630667 ~ 13650074 (+) True AMCG00014421
AMCG00014422 mRNA upstream 40220 13590920 ~ 13615018 (+) True AMCG00014422
AMCG00014420 mRNA upstream 204019 13450098 ~ 13451219 (+) True AMCG00014420
AMCG00014418 mRNA upstream 283862 13361748 ~ 13371376 (+) True AMCG00014418
AMCG00014419 mRNA upstream 295218 13340187 ~ 13360020 (+) True AMCG00014419
AMCG00014424 mRNA downstream 54933 13744121 ~ 13747498 (+) True AMCG00014424
AMCG00014426 mRNA downstream 60485 13749673 ~ 13788076 (+) True AMCG00014426
AMCG00014425 mRNA downstream 101961 13791149 ~ 13813879 (+) True AMCG00014425
AMCG00014427 mRNA downstream 131168 13820356 ~ 13827551 (+) True AMCG00014427
AMCG00014439 mRNA downstream 193531 13882719 ~ 13903655 (+) True AMCG00014439
TU86705 other upstream 3646590 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 6238644 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 6305771 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 9003274 4649200 ~ 4651964 (+) True G68475
TU87778 other downstream 647670 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 1986443 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 1986443 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 2440337 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 2776493 16465681 ~ 16469113 (+) False AMCG00014525

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00073376 False 1881 mRNA 0.59 11 NC_007120.7 34334156 ~ 34349651 (+)
grasscarp (Ctenopharyngodon idella) CI01000009_03276572_03283625.mRNA True 2277 mRNA 0.54 11 CI01000009 3276572 ~ 3284006 (+)