RNA id: AMCG00014425


Basic Information

Item Value
RNA id AMCG00014425
length 7870
RNA type mRNA
GC content 0.39
exon number 20
gene id AMCG00014425
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 13791149 ~ 13813879 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTGGCTTGGAGGTGGGGAAAGAAGccattttgttggtttttctttCCTAAAGATGAAGCGGCTGAGATTGTTTATTGGGAGTTTATGTAGTTGGGCTGACTGATTCCTACAGAACGTTATATGATATAATGGATAACTTTTTAGCAACAGGAAAGCAGGTTGCCGAGGATTTACCTGCAAAAACCTGTAGATAGTTTTTgtctttccccctttttttccaCGCCTCGCTCAAGTGCAACTGTACTTATGACTTCACCGACAGAATTAGTTCATTGCTAGCTAAGCCTCCAGGAGATCCATGGCGAGAAACTAGTGTGATTGGAGTACGTGACAAAAGCACACTCATGCTACCAACCCCTGCAGGATTTTGACCTGGGACGACACATGGATAATTTTAAGCCACACAGCGACCAACCTAACACAATCGGAAGTGACTTCTTCTGAAAAAGAAATCGCACAACCCGGGGACTTTGTATCAAGtccagaggagaggaggggagaaaaCCCGTTTGTCATTTCTGGTCTTCCCCACATTATACGAGCATGGCAGAAGATAATCGGCAGAGCAAGAAAGCCAACTTCTCCGCGTTAGCAGAGCATACCAACGGACTCACAAAAACGTCCACACTTGCCTCCAAACCAGGGGCATCTAAGAAATTAGTTATTAAAAACTTCAAAGACAGACCAAAGCTCTTAGACAGTTACACTCAGGAAACATGGAAAAAGCTTCAGGAAGCTGTAGGAGCCATACAGAAAAGCACTTCAATTAAGTACAACCTTGAAGAACTCTATCAGGCGGTGGAGAACCTTTGCTCTTATAAAGTGTCTCCTACACTATACAAGCAGCTCAGGCAGGTGTGTGAAGATCATGTGAAAGCTCAGATCCATCAGTTCAGAGAATATCCTTTTCCCTGCCTCGAGAGACCACTGAAGTACaatgttttcttcaATTCTTTGGACAATGTTTCTTTTCTAAAAAGGATGAATAAATGTTGGCAGGATCACTGCAGGCAAatgatcATGATAAGgagcattttcttatttttggaTCGCACGTATGTTCTACAGAACTCCATGTTGCCGTCCATTTGGGACACGGGGCTGGAGCTGTTCAGGACCCACATCATCACTGATAAGATGGTCCAGAGCAGGACGGTGGACGGGATCTTGGAGCTGGTGGAACGGGAACGCAGTGGCGAGGCTGTGGACAGGAGTCTTCTGCGCAGCCTGCTGAGTATGCTCTCGGACCTGCAGGTGTACAAGGAGTCTTTTGAGCAGAAGTTTTTGAAGGAGACAAATCGTTTGTATGCAGCAGAGGGCCAGAGATTaatgcaggagagagagGTACCAGAGTATCTTCACCACGTCAAGAGGCgcctggaggaggagaatgACAGAGTGATCACATACCTTGACCACAGCACACAGAAACAGCTAATTTTTACTGTGGAGAAGCAGCTTCTTGGTGAACACTTGACAGCCATCCTACAAAAAGGTCTGGATAGCCTGCTTGATGGGAACAGGGTAGCAGAGCTCACTCTGCTGTATCAGCTCTTCAGCAAGGTGAAGGGAGGGCTGCAGGTCCTGCTACAGCACTGGAGAGATTACATCAAGAACTTTGGCATTACCATCGTGGCAACCCCGGAGAAGGACAAGGACATGGTGCAAGACCTGCTGGACTTCAAAGACAAGATCCAAAACATCACTGAGTCCTGCTTCCAGAAGAATGAGACCTTTGTCAACTCCATGAAGGAGTCCTTCGAGACCTTCATCAACAAGAGGCCCAACAAGCCTGCTGAGCTTATAGCTAAGTATGTTGATTCAAAACTGCGTGCTGGAAATAAAGAAGCAACAGATGAGGAACTGGAGAGAATACTGGACAAAATCATGATCATCTTCCGGTTCATTCATGgcAAAGATGTGTTTGAAGCATTTTACAAGAAAGATCTAGCCAAGAGGCTGCTGGTTGGGAAGAGTGCTTCAGTAGATGCTGAGAAATCCATGCTGTCCAAACTCAAACATGAATGTGGAGCGGCCTTTACCAGCAAGCTGGAGGGCATGTTCAAAGACATGGAGCTCTCCAAAGATGTCATGATTCAGTTCAAACAGtatatTCAAAATCAGAGTGACCCTGGCAACATAGAGCTCACTGTTAACATCCTTACGATGGGCTACTGGCCTACGTACATACCCATGGAGGTCCATCTGCCCACGGAGATGGTGAAACTGCAGGAAGTATTCAAGATGTTCTACCTGGGGAAGCACAGCGGCCGGAAACTGCAGTGGCAGCCCACACTGGGCCACGCCGTCCTCAAATCCCAGTTTAAGGAGGGTAAAAAGGAGCTGCAGGTGTCCCTCTTCCAGACTCTGGTGCTGCTCATGTTCAACGAAGGGGATGAGTTCACCCTGGAGGACATCAAAACTGCCACTGGAATAGAGGACAGTGAGCTGAGGAGGACGCTGCAGTCTCTGGCCTGTGGAAAAGCCAGAGTGCTCAACAAAACCCCCAAGGGCAAGGACGTGGAGGACGGAGACAAGTTCCTCTTCAATAACGAATTCAAGCATAAACTGTTCAGGATCAAGATCAACCAGATCCAGATGAAGGAGACCgtgagcaccACAGAGCGCGTGTTCCAGGACAGGCAGTACCAGATCGACGCCGCCATTGTCCGCATCATGAAGATGAGGAAGACCTTGAGCCATAACCTGCTGGTGTCAGAGCTCTACAACCAGCTCAAGTTCCCAGTTAAGCCTGGAGACCTGAAGAAGAGAATTGAATCCCTCATTGACCGAGACTACATGGAGAGGGACAAGGACAATCCCAACCAGTACCATTATGTGGCATAAATTGAGTGTGAGCGACAATCCTGACCTGTACTGCACAGCACTGACCAGCAGAACTCCACGGGCCCTGTCCAGCCGGCCGACAGCACGCCTCTCACGCCAGGATGACGTCATTCACGCAGCTGCATGCGCTGTCGAGTTCAGGAAATAGGCATCGGGCGTGTTTGAATCTCCAGTGGTGGTCTGAATTCATAGcattactattttgtttttcttgattctCATTCTCTGTTCTACTgtaggattttttgttttgtttttcagtttgcaaCTGCTGTCTACCTAACAGAGCCAATGAGAAGCAGGAAAAGTATCTGATATAGGCCTGACCGTTTAGCTTCTCCAGACCACGAGTGAAGGCAGTCCGCAGGATGACGAGGGCAATTTCTGTTTGGCATTGCACTGGTTACTGGTTTGCTAGGCTACTTCCTAAAAATCATAAATGAGGTGAACTTTTATCAGTGGGGTTAAGACATTTGCCTGcacctttttatgtttttttttttctgcttgtaCCACCTTTGTTAGGATGATTCCCCAGTTTGCATACTCTGAACTTAGTAGCTGATGGTCTGTGTTTGCAAGGAGTTACAATATAGAGAGAAAATAGAACAAGAAACTATTATAGGCCTAAAAAGTGCCAAGCAGACCAGGCTTCTCTCTCACAGATGTGTGTATCCAGAAGCACATCCTACACTGCGTTTGTCTTCTCTAGTACGTTTTAGCGATTGTTAAGCCAAATCTGTTCTGATTAATGCTAATAAagtgtcatttttatttgacttctCTGAGTAGTAGGTAATGCTGACACATTAtagtttggaaaataaataataacgaACAGGGAGATCTCTCAAGTGCAATTTTACTGGTTCACTTTTTAATCGCCCAGACTTGGGCTTGATAGATGCTATTAATGTCATTGCAAAAGGAAAGTCTGCCAGATGAAAATGAGTGGGTTGCTGAGCACCTAGGGTACACACTGTAAATAAGTTGTTTGGTATTCAACAAAGAAATGATTTCTGAGAATTGTAAGAGTTTTGTTATGGTGATGTCACAAAATGAGAATATGTGGATGAATGGCGTTAATAAAACTGCTGTATTTGGTAAGAGCTGTATAATAGCAtgtctaatttaattttttttaaagaatagtatttttttgtgtgacttgtatttaaatgtctacTCTGCATTGGCATACCTAATTTTTTGATTctcttaatttcagtttttggtgCTTTCTTTTCCGAACATTAACGCTGTGCACACATGCATTGCAGCACACTTTTGCCTTTGTATTTGGCATTTCTCCTAAAGCTTCGTGATCGAGATCCCCATAgattgtgtggttttattttttttatttaacattttttgagGTTTATTTGAAACTAAATCCTCCTTTCCTTCCCAGGTTCATCTTCACTTTtttagttaatatattttagatatattAACTAACTGGAATGTGCATATATTGTTCCAGTCTTCCTATTATATCCTTGAGCTGCACAGTGTTTgtgattaattttaatattcatatttaattacacaCTGTTAAATTTAGGTCAGGACGTAAACaaccttgttttttctttgtagatcaagttgaaaatatacatgttccATGTGTTGATAATTGACAACTCTGATTCGCAACATTTTTTTCAACTGACAATCAAGTTTCAGGAGGTTACAGCTGCCATATTTTCAtcattgttttcacatttgtcCCTGTACAAGAtagtattagagtattttttaatcattgaatttattttaacagtattaTGAAGGACTATAGGAAGCttagaatgcattttaatttgtcatgtttttttctttatcattatGGGATATGGAatgtaaacttttaaaataagtgtgtgtgtgactgtgtgtgtatatacagctctggaaaaaattgagaccactccaagttcagaaatcaattttaagtggtctcttaattttttccagagctgaatatatgtatatatacaaatacaaattgtgtgtgtgtgtataatgtgcaCGTAtctatttgcaaatgtattctggAGAATTGGCTGCAGAAGTAAAAGGCAAACTGAAGAAATGACAGCTGATTCCATGCTTCTCTGTAAAGCACAGCcacattcatacatatatgaatatttttaaatattattgtaaatagtGGCAGTTGCTAACAAAAAAATTGCATACATGAGGCATATTACtaagtattattttttgccAACCTTGAGTATAAGACCAGGTTGGTATCAAATGGGTCATTTGTACTGAACACAAGAGCCAGACTGAGACAGTCCTGTGCTAAAACTAATTTACAGCAAAGTGAAGTCCTGAAGAATCCCTAACTAGAAAGGTTTTGTCTTTAGTATCAAGTTGATAATTGTCTTACAACTTCTCGTACCTTTTGGAgttttatctgtgtgttttcGTAAGCTTTTAACATACTTCTGTtaaatgttctgtttgtttgtcagaGAGATTTAATGAGTAAGCTAATGTCATGGTGCGGTCAACAAGGTCTGATGAATCGGTTTGAGAAAGCACTGTTAGCTTTTGGACTGTCATTGTTTTGTCCACACGTGTGTCCAATGAAAATACAAGTTTTGCAcctttaaaagtatttcatgAAACTACAATATACAATCCTCCTTATTCTAAGATTCATGAGAGCATTTCTTATTGATGTAAtgtagattaaaaacaaaatcagtccCTTTATTGTAACTAAGATAGTGTGTGTATTACTTAGCAATATCCTTTCTATGGAATTCCAAAACACACTGCCTGGTAAAGTGAAGTAATAACATTTTTCTCAAAGCTCAAAAGACTTTTATCTCCTGTTAGTGTGAATATTTCATATCTTTTGTTGAGATGTGACCTGGAATAGAAAGCAAATGCCATAATCATTCTGAACTCAATAAAGGATTGCAATTCACAAAGTTAGACTTAATCTGTGCCCAACAGATCTTTTGGCCTTAAGCACAACAGGCTCTTAATTAGGTTTTAAACATCTAAATTAGATTTTCGTGCTTGAGTTCAGATATAATTGCTTAGAACAACATATTAGAAAATGGAAAGCTGTCTTTGTGAGGCAGCTCAaaaggtatttgtttttcataaaggTTGTTATTTTTCAGGCCTTTTTTCTgaattacacattattgtgGAATTTTATGTGCTACTGCAGAAATTCTCCATAAGATATGTGGGTTAATAGGTGCACTCATCCCCCCCTGCTTGTTACTGTGACCAGTATTAAGATTTTGCCAGCTATGactgcaataaaacatttacacttttcataaaacaaaatacaatttctacagTCAAATAAACTTCATAATTACAAGCAGGAACACTCATACTGACATCATTTGTACTTAATGGTTGGTGGCTGCCCATGAGCCTCTTTACATTTGAAAGATGGACATTGCGTGGttaattaaccattttaattttaaatgtgtattcatatttataaaataatataatattaatattgccTTTCATCTGACAAGTATGTTacaatgtgtctgttttgcaaTTAATACTTATACAATCATGTATAGTTTATATCTCAATTCAGACTTATCAGGAACTGTTTGTCACCATGCAAACCAAGAGTGAAACAGTGCAACAAATGTTACTTCATTACATGTCACTTCAtaatatagatacacacacatctaggcattaattaaaaattgagAATGTAATTATTCTGATCAAAggcagtttgttgttttttatggttATATCACTTTGTAAGAAAGTCTGTGTTTATCCCCATGTCTGTAAagattgtgtttgtggtttaaatTAAGAGCAACTTACTGAAGAGATTCCTCCATGTTTGGAAGTTAGTAAAATTAAGTGGAGATATCTGTTGTTTGCACCTGTGGATTTAAACAGACACAGGTGCCCCGCACCCTTCCTCACAATCTGCATTCAAAATCCATTTCAGAAGTGATTAATTCTGCAGTATCTGCTTTGATGGAGTATGAATGTTTACAACAAGGCCAAGGCTAATCATATGTTTTGTTGTGgggttaatttgtttttttgttaacgATATTGTTAAAATGTCAGATAAATCTGGATTGTAACAGTCTACACAGACAgtcaaagtgtttgtttttttatttattttttaatttacaaatattgcCCAGTATATCGAGGAGAGGAGATACAACAGGGTGTGGACTGAGTTCAAAATTAAGAAACTCGATTATCCAAACTATGGCTCTGAAGTTGTCATATCCCCATCTGTGATTGTTACACAATGTCCAATGACTGGGCTGCTAACCCTGATCATCAGTCGAGAAAGCCCTCGTCACATGTTTATGAAAGGCTTATTTTTACTAGTTAAATACAACTGAATGTATTGTGCAAATGTAAATGGGTAAAAAGAACACTTTGAGAATAGTCATCACCACAGACCACAGAGCAAAAGAAGTCACTCCTTCACTCTTTGACTTCTGCTTTTTATTGTCTtcccacatttattttattactccCTTCTTGGTCAGGTGATTTCAGCTGAGACAGAACCGGAAACATTATTCTGCTCCTCAGTCTCCAGTGTCTTCTGGATTTCATTCCAACTGAATTCTCAATTTCTTAGCCGaactcttaattgaactaattgcTTGATATGATAGTTGTTTCAGACTGTTTTCACcttcaaataaattacttttatagGTGACTTTAGGGATACCTATGTAAGCATTGTTACTGCTTTAAATAAGTATTGATTACACTGGAATCATTTTTGTTCTATTTGCAATGACTGGATTTGGAGAACATAAAAGTGTCCTGCAATAACAGAGGGCTGGGGGGCATTATTACAACTTTCATCTTGAATCAATGTAATGAAAGGacatgaaagttttttttttttaagtcctgTAGTCCTAATcagatttgtataattattcacataactgatgtatgtttttatgcataATGGTGTGACCTTAACCCATTGGCATATGCTGG

Function

GO: NA

KEGG:

id description
K10609 CUL4; cullin 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87518 lncRNA upstream 94278 13694815 ~ 13696871 (+) True G70054
TU87516 lncRNA upstream 106657 13683043 ~ 13684492 (+) False AMCG00014423
TU87409 lncRNA upstream 410745 13377534 ~ 13380404 (+) True G69961
TU87408 lncRNA upstream 411556 13352333 ~ 13379593 (+) False G69961
TU87406 lncRNA upstream 455964 13334214 ~ 13335185 (+) True G69959
TU87727 lncRNA downstream 353567 14167446 ~ 14171012 (+) True G70221
TU87766 lncRNA downstream 379900 14193779 ~ 14194433 (+) False AMCG00014456
TU87767 lncRNA downstream 384101 14197980 ~ 14199308 (+) False AMCG00014456
TU87784 lncRNA downstream 652825 14466704 ~ 14467744 (+) True G70271
TU87814 lncRNA downstream 1365966 15179845 ~ 15180820 (+) True G70286
AMCG00014426 mRNA upstream 3073 13749673 ~ 13788076 (+) True AMCG00014426
AMCG00014424 mRNA upstream 43651 13744121 ~ 13747498 (+) True AMCG00014424
AMCG00014423 mRNA upstream 101961 13655238 ~ 13689188 (+) True AMCG00014423
AMCG00014421 mRNA upstream 141075 13630667 ~ 13650074 (+) True AMCG00014421
AMCG00014422 mRNA upstream 176131 13590920 ~ 13615018 (+) True AMCG00014422
AMCG00014427 mRNA downstream 6477 13820356 ~ 13827551 (+) True AMCG00014427
AMCG00014439 mRNA downstream 68840 13882719 ~ 13903655 (+) True AMCG00014439
AMCG00014440 mRNA downstream 91970 13905849 ~ 13921330 (+) True AMCG00014440
AMCG00014441 mRNA downstream 117003 13930882 ~ 13939105 (+) True AMCG00014441
AMCG00014442 mRNA downstream 130901 13944780 ~ 13965123 (+) True AMCG00014442
TU86705 other upstream 3782501 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 6374555 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 6441682 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 9139185 4649200 ~ 4651964 (+) True G68475
TU87778 other downstream 522979 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 1861752 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 1861752 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 2315646 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 2651802 16465681 ~ 16469113 (+) False AMCG00014525

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000299_06257032_06266210.mRNA True 2921 mRNA 0.51 15 CI01000299 6255857 ~ 6266210 (-)