RNA id: AMCG00014426


Basic Information

Item Value
RNA id AMCG00014426
length 6320
RNA type mRNA
GC content 0.50
exon number 38
gene id AMCG00014426
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 13749673 ~ 13788076 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCAATAACACAGCTTTGCTCAGGAACACAGACAACGCATACGTAACTTGCTATCTGCTCTTTTGGGATTCATGTTAAATTGTGAACTTTGGTCATCGTGAGCCCAGTTTTAGATCCTACTGTGCAGTCTTTATAATGGAGTCTATTCTGTGGAAAGTCCAGGCCTTAAACCTGGCCCTGCTCTTTATTATCACCAAGTCCAgctgtgtgtctctcagtgTTTTCCTGCAGAAAGATGAAGCGAGTCGAGTGCTTTTGCAAAGGTCAAAGCGTGCTAATTCTTTCATGGAAGAATTGAAATTGGGGGATCTGGAGAGGGAGTGCCTGGAAGAAATATGTTCCCAAGAAGAAGCCAAAGAGATATTTTCCATTGAAGAAAACTTTGATATGAGGGAAGAAACTGTCAGAATGGTTAGGACATCCCTTGGGTGTATTTACAAGAACGGGGGCTGTGAGCACTTCTGCACTGAAACAGCCGGCTCACCTCACCAGTGTTTTTGTGCTGCTGGCTATTCTCTAGACAAGGACAACACCTCTTGTATACCACAAGTACAATTTCCCTGTGGTCAGACACAGAGCCACTTCAGTCCAAGGATAGTGAAAGGGGTAGTGTGTCCCAAAGGAGAGTGTCCCTGGCAGGCTCTCCTGCAGATTTCTGGTGTATATCTATGTGGTGGCATCGTCATAGATACCATCTGGGTCCTCACTGCTGCTCATTGTGTACATCAGATATCCAAGTACAGAATGATGGTCATCCTTGGTGAGCACATACGGAATGTCGAAGAAGGCACAGAGCAGTTGAAGGTAGTCGAGAAGATAATTGTCCATGAAGACTACAATGCTACAAATGCAGACAATGACATTGCACTCTTACAGCTAAACTCTAGTGCCACGTACAACCAATTTGTGCGTCCAATCTGTCTACCCACAAGGCAGTTCACCATGCTGGAGCTGGCCACCGTGCGACTGTCCACCGTCAGTGGTTGGGGGAGGCTGGGGGAGTCAGGACCTACAGCCAAAGTGCTGCAGAGAATTGAGATCCCGCGAATTAAAACCCAGGAGTGCAGGGCCAAGACCAAGATGACCATCACAAACAACATGTTCTGCGCTGGCGACTTCGAGGGAGAAAAGGATTCCTGCATGGGAGACAGCGGAGGCCCTCTGGTCACCAAATACAAGAACACCTGGTTCCTGACTGGCATTGTTTCCTGGGGGCAGGGTTGTGCATTGCCTGGGCTTGGATTCAACAGAAAAACCTCCACCATGCTACTTCAGCTGCTCTGCCTGGCTCTCACATTTTCCTACTCTCTTTCCGCAACAGTGTTCCTGAGTGAGGATGAGGCTCACAGTGTCCTGCACAGACACAAGCGTGCCAACTCAGGCTGGTTCGAGGAGCTGAAGGTGGGGAACCTGGAGCGAGAGTGCATCGAAGAGAAGTGTTCTTATGAAGAAGCCCGGGAAGTGTTTGAGCACGATGAAAAAACGagGGAGTTTTGGGAAACTAACTATGTTGAGGACAAATGCCATTCGAATCCGTGTCAGAACAACGGCACATGCCAGTCTCACTCAGGATATTACAACTGCATCTGTCTGAACAAGTACCATGGGAGAAACTGTGAACATGAACCTGACAATATTCTCAAGTGTCCCTACCTGAACGGAGGATGTGAGCACTACTGTAATGGCAGTGGGGTCCAACGGTTGTGCAAGTGTGCAGAGGGCTATGCGCTTGCGGAGGACGGACAGGGGTGTGTTCCACAAGTGCAGTATCCCTGTGGGAAGGTATCTGTTGTTCAGAAAAGTCCGTCGTCTGTCATGGATAACCCTGATCAACAGCGTGGGCGGATTGTTGGGGGGACAGAGTGTACAAAGGGACACTGTCCTTGGCAGGTTCTCTTGATGTATGGAACCAAAGGGTTCTGTGGAGGAGTGATCCTGCAGCCGAAATGGGTCATTACTGCAGCTCACTGCTTGGAGCTGCTGAAGGTCAAATTCCTCAAAGTTGTCGTAGGTGAACATCATACAGAGTTGAATGAAGGCACTGAGCAGACAATTAAAGTGGTTCAGATAATAATTCATGAGAAGTATGTGCCATTGACGGCTGACAATGACATCGCCTTGCTGAAATTGCAGCAGCCCATTGTTTACTCAACGTACGTTGTGCCCATCTGTCTGCCGGAGCAAATGTTCTCTGAGAGGGAGCTGACTGCCATTCGCTATTCCACAGTGAGTGGGTGGGGCAAGCGCAGTGAGAATGGCCCTGTCTCCATTGTCCTTCAACAACTGGAGGTCCCCAGACTGAAGTCAAAAGAGTGCATCGAGTACAGCAAGGTCAATATTACAGACAACATGTTCTGTGCCGGCTACTTTGAGGGAGAGAAGGATTCCTGCAAGGGAGACAGCGGGGGCCCTCTGGTCACCAAATACAAGGACACCTGGTTCCTGACTGGGGTTGTCAGCTGGGGGAAGGGCTGTGCACAGCCTGGGCATTATGGGATATACACCAAAGTGTCCAACTACCTGGACTGGATACACAAGCACATAGCTGAACGCATATTCCTGAGGAGGCAGGAGGCCCATGCCATCTTGCAGAGACACAAGCGTGCAAACACTGGTCTGTTTGAGGAACTGAAGCAAGGGAATCTAGAGAGGGAGTGCTTTGAAGAGAAATGCTCTCATGAAGAGGCCAGGGAGGTATTTGAGGATGACGAAACAACGaaGAGGTTTTGGCAAGAATACACTGATCTGTGCCATCCCAATCCCTGTGAGAACAATGGGTCCTGTGTGAATTTGTTCGACTCTTACAGCTGTGAATGTACCAAAGGATTTCAGGGGAACAACTGTGAAAAGGGTGAAAATATGTGTCTTCACAATCCCTGTCAGAACAGTGGGAACTGTGTGAATTTGTTCAATTCCTATAGATGTGAATGTCTTGAACGATTTCAGGGGAGAAACTGTGAAATGGGATGTGAGCACTTCTGTAATGGCAGTGGGGTCCACCGTACGTGTGAGTGTGCAGAGGGCTACGTCCTAGCGGAGGATGGACAGAGGTGCCAGCCGCAAGTGTTGTATCCTTGTGGGAAGATCCCTGTTCTTGAATCAATGAATAATACATCTGAAAACCTTCGTCCGAAGATTGTAAGGGGGGCATACTGTCCTAAAGGTCACTGTCCATGGCAGGTCCTCTTGATGCATGGAGAGCGAGCGATTTGTGGAGGAGTGATAGTGCAGCCTCAATGGGTCATCACAGCAGCTCACTGCTTAGAGAGCCGGGAGGCCAAGTCCCTCATAGTAGTCGTAgGTGAACATGTTATCGGTGTGAAGGAAACCAGCGAACAATGGATTCCAGTGGCTCAGGCGATCGCACATGAGAAATACAGGCCAGAGAGTGGAGACAATGACATCGCCTTGCTGAGATTGCAGGAGCCCATTGCGTACTCTGAGTATGTTGTGCCTATCTGCCTGCCGGAGAGAGAGTTCTCCGTGAGGGAACTGGCTCCTGTCCGCTTCTCTATAGTGAGTGGCTGGGGGAAACTCAGCCAGGGCAGTCCCTCCTCCCCTGCACTTCGCAGGCTGGCAGTTCCCCTGCTGTCCACTCAGGCCTGCATGGAGAAGAGCCAGGTGAACATCACAGATAACATGTTCTGCGCTGGCTATTTTGAAGGGAAAGTTGACTCCTGCAAGGGAGACAGCGGAGGCCCTCTGGTCACAAAATACAAGAACACCTGGTTCCTGACTGGCATTGTTTCCTGGGGGAAGGTGTTCCTGGGGAAAGAGTGGGCCAGCCAGGTCTTCAGCAGACACCGGAGGGCTAACAGTCCTTTCGAAGAGTTAAGACGAGGAAACCTAGAGAGAGAATGCTACGAAGAGAAGTGCAGTTACGAAGAAGCAAGGGAGGTGTTTGAAGACCAAAAGAAAACGGCAAACGGCGATGCCTGCACATCTGCACCATGTCTCAATGCTGGTCAGTGCCAGGATGGAATAGGAGCATACACGTGCTTCTGCAGAACAGGCTATCAAGGGAGAAACTGTGAAATCGTCATTCCGAAGCTCTGTGAAAACAACAATGGGGAATGCCAACATTTCTGCAAAGTAGAAGCAGAGCAGGTCAGCTGTTCCTGCGCCACTGGGTATTATCTCGGGGAAGACGGGAAGCAGTGTTTATCTGACGAACAATTCCCATGTGGTCTTCTAAAGGAGTCGCTCAAAAGGACAATCTGGATCCCAGAGCTGGATTACGATGAAGATGTTGGCAATAGCAATTACAGTGCAGCAGCTGTCAATGTAACAGACACACTGAACAGCACAATCGGACCTCTAGTTGAAGAAGAACCTATTTTACCAGAGGGGCGGGAGTACGATACAGAGAAGTCTGAAGGCAGGGAGGCAACGCATAATGTGGAAAAGGTGCTCATTCACCACAAGTACATCAAAGAAACCTACAACAACGACATCGCCATCATCAAACTGAAGGAACCCATCAAATTCACCAATTACATTATCCCGGCATGCCTCCCCGAAAAGGAATTCGCAGAGAAGGTGTTGATGAAGGAGAAGGACGGTCTGATCAGTGGCTTTGGCCGTATGCACGAAAGGGGAAGGCAGTCGACCATTCTCCAGAGACTCAGCGTCCCGTACGTGGACAGACATGAGTGCATCGAGTCCAGCTTGTTCAAGATCACCGTGAACATGTTCTGTGCCGGGTATGACAAGCTAGCCAGGGACGCCTGCCAGGGAGACAGTGGTGGCCCCCATGTCACCCGCTTCCGAGATACTTGGTTCATCTCTGGGGTGGTGAGCTGGGGAGAAGGCTGTGCAAGGGAGGGCAAATATGGTGTCTACACCCAGGTGTCCAGATATATCCCCTGGATCAAAACCTCCAACAATAATGCAGCACAGATCCTTGGAAGAACCAAGCGTGCAAATTTCATGCTGATTGAGGAGATCCTTAAGGGCAATTTGGAAAGAGAGTGCTATGAAGAGCTCTGCAACTATGAAGAGGCCCGGGAATATTTTGAAGACACAGAGAAAAcaaACACATTTTGGACCATTTATAAAGATGGTGACCAGTGTGCACCCAACCCTTGTCGAAATGGGGGCTCGTGCACTGACACAATTGGGGGATATAAGTGCAACTGTGCAGAGCACTACACAGGAGAGAACTGTGAAAGAGATGTGACCCAGTGTCTTCCTGATGACCCCTTGGGCTGTACGCAGTTTTGTCGTCCTGGGTCCTACAGCTCGTTCATCTGTTCCTGCACCACAGGGTACCAACTCCACAAAGACGGGAGGTCTTGTTATCCAGCAGCGAAGTTTCCGTGTGGGAAGGTGACTCCCCAGTCCATTCAATGCAGCAGATCCAAAGAGGTCATCAATGTCACTCTGCCCTGCCCCCACGGACAGTGCCCATGGCAGGCTTTGCTTATCAACAAAACCAACCAAGGATTTTGCAATGGAGTTGTTCTGGGACAATACTGGATGATCACCACAGCAAGTTGCATTCAAATGGTCGATACATTTTATGTTGCTGTTGGCTCTATATCCAAATTCTATGACCCTGCAAATGTAACCAATCTCTCGGACCAGTTATTAATGGCTGGCCATGGGGAGGGACAGGTGCTGATGCCATCATATTTTCACAAACATCCAAGGTACCAGAAAGAAGGTGGGTCTGACAACTTGGCTTTATTACGGCTGCGAGATCCCATCCAGTTCAGCTCTCGTGTCTTCCCCGTGTGTATTCCCGAGAAGGACTATGCCGAGAACGTGCTGATGCTGGGCAGGAAGGGCGTAGTCAGCAGTTGGAAGGAAAAGGGGACAGGAGAGAATGCACATCACATCAACCAACTCTCCTACCTCCCTCTGAAAACCTGTCAGGAGAGACATAACTTCACCATCACCAATAAAATGTTCTGTATGGATGGGGCCATGAAGGAAAGCTGTTCTTTGGAGCCTGGAAGCCCGGTGGTGACAGCTTATAAAGGCACCGCGTTCCTCACTGGCATTCTCCTCTCTGAGACCAGGGACTATGACTGCAGCAGGGGACACCTCTTCTCAAAGATCTCCAGATACCTGCCCTGGATAAACCAGATCCTGTTCCCCTGGCTTTACTCACACTTTCTTGAAGAGGTTCCTGTAAGTGatgattttcagtttctcaAGGATGAGGAAGATGCCGCAACGGATGAAGAACGTCTCGTGCTTGGCCAGAGCTTCATTCAGGAGCAGAAGATTCCCTTCACTACAGCTGCTGCTCAGCCTGGAAGAAATAAGCAGCGCACCCAGCAGTCAGGCCTCTTAGGTTCAGAAGACAAGCACTTA

Function

GO: NA

KEGG:

id description
K01320 F7; coagulation factor VII

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87518 lncRNA upstream 52802 13694815 ~ 13696871 (+) True G70054
TU87516 lncRNA upstream 65181 13683043 ~ 13684492 (+) False AMCG00014423
TU87409 lncRNA upstream 369269 13377534 ~ 13380404 (+) True G69961
TU87408 lncRNA upstream 370080 13352333 ~ 13379593 (+) False G69961
TU87406 lncRNA upstream 414488 13334214 ~ 13335185 (+) True G69959
TU87727 lncRNA downstream 379370 14167446 ~ 14171012 (+) True G70221
TU87766 lncRNA downstream 405703 14193779 ~ 14194433 (+) False AMCG00014456
TU87767 lncRNA downstream 409904 14197980 ~ 14199308 (+) False AMCG00014456
TU87784 lncRNA downstream 678628 14466704 ~ 14467744 (+) True G70271
TU87814 lncRNA downstream 1391769 15179845 ~ 15180820 (+) True G70286
AMCG00014424 mRNA upstream 2175 13744121 ~ 13747498 (+) True AMCG00014424
AMCG00014423 mRNA upstream 60485 13655238 ~ 13689188 (+) True AMCG00014423
AMCG00014421 mRNA upstream 99599 13630667 ~ 13650074 (+) True AMCG00014421
AMCG00014422 mRNA upstream 134655 13590920 ~ 13615018 (+) True AMCG00014422
AMCG00014420 mRNA upstream 298454 13450098 ~ 13451219 (+) True AMCG00014420
AMCG00014425 mRNA downstream 3073 13791149 ~ 13813879 (+) True AMCG00014425
AMCG00014427 mRNA downstream 32280 13820356 ~ 13827551 (+) True AMCG00014427
AMCG00014439 mRNA downstream 94643 13882719 ~ 13903655 (+) True AMCG00014439
AMCG00014440 mRNA downstream 117773 13905849 ~ 13921330 (+) True AMCG00014440
AMCG00014441 mRNA downstream 142806 13930882 ~ 13939105 (+) True AMCG00014441
TU86705 other upstream 3741025 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 6333079 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 6400206 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 9097709 4649200 ~ 4651964 (+) True G68475
TU87778 other downstream 548782 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 1887555 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 1887555 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 2341449 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 2677605 16465681 ~ 16469113 (+) False AMCG00014525

Expression Profile