RNA id: AMCG00014427


Basic Information

Item Value
RNA id AMCG00014427
length 2785
RNA type mRNA
GC content 0.43
exon number 8
gene id AMCG00014427
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 13820356 ~ 13827551 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGATCTCGAAAAGCTTCTACTTCATTAGAGGCTGTCTGAGTCCTGTCCTGGCCGTAACTCTGGAGGTGAAAGATGGGAACGACACCTGTATCAAAGCTGAGCTCTTGGCCAACCTGTCGGTCCTGTACAGTGTCGGCAACGGCACGAGAATGGCACTCATGAATCTGCCTGACTCTGCCGAGGTTGGTAAAGGCAGCACCTGTGGCAGCTCTTCTGTGGCCCCCATGCTGGTAGCCACCTTTGGAAATGGTCATTCTCTCAGCCTGAATTTCACTAAGAGTATGACTCTGTACCGTGTGGACACACTAACTGTTGCCTACAACCTCAATGACAGCACTTTCTTCCCTGACTCCAAAAGCACAGGCAAATGTTTCAGTGCATCTCCAGTGGCCATGCCCAAGGTCAATGTGACATTCACTGAAATGAGGATGGAGGCATACATGCAAAGTGCTAACCTCAGCAAAGAAGAAACCATTTGCACTGCAGATGCCAGCGCTACCACTCCAGCTCCCAAAACCACGCCAGCCACCACCACCGCAGCACCCACCACATCTCCAGGCACCCCTGTGCAAGGAAACTACAATGTCACTGGCTCAAACGGCACCTGTCTGCTGGCTAAGATGGGCCTGCAGCTGAATCTCACCTACACCTCCACTGCACAGGGCAAGCTTGTGCAGGAGATCCTCAATGTCCAGCCCGGGCTGGTCAGGGCCTCTGGGTCTTGCGGTTCCACAGTGGCCACACTGTCACTGACTGATGAACTTCACTTCAACCTGAACTTCACCTTTAATCTGAATTCAACAACCAAGAAATACCACCTCGGTAGCATCAGTTTTGATGCCAACATGACAGACGTGACTGCGGAGGAGTGCCAGCTGGACGAGGACAACATGCTGATCCCGATCATCGTGGGCGCTGCCCTGGCTGGACTGGTGCTCATCGTACTGATCGCGTATCTGATCGGGAGGAAGAGGAGTCACGCCGGGTACCAAACCATCTAATGGAATCGCACAATGACGATGGAGATAAAGGATGATCAACCACTGTTACTAATGAAGCTCTCGCAAGGACTCGGTACCACCccttttaattcattaaatcaATACGTTGTAAGGGAGCTTTTTAGTTGGCCTATGCATCTGCTTCTTGACAAGCTCCTCTGCTCTTACAAATGTACCCGAAAGATtgctatatttattaataagaCGGGGGCTTCCTTCTGGATTGGCCATACTCAAGAATTCAAGGGAAACACATGGGCATTCTGGCATGAAGAACACCACGTCACTCAACAGCACTACATTAGACGTGTTCAAAATTCCCACACTAGGTGCCGATACACCTGACCAGGCTTGGTTTAATATATGGTAATACTGCACATGCTCATGAACCCGTAACACGTCTAAATTAatcatgtgaaaatgtaacaacAGACGGGTGGCTGATGTTATATAAATGTCATCGATTTTCTTACTTAATAAGAGAAGTTTATTTAGTCTGGGGGGGAAAACTCCCTTATCTTTAAGTTGTACATTTGTGCAAGAGCTCTagactttgaaatgcatttgctaCAGGAAGAAGGTGAGCAATGTTTATATAAACACCTTGGCAACTGTCATGTGTGGAGAAAATGCCCTTTTAATGCCCTGTGAACTTGCTAGGTACCGCTCTCTTGCTGTGTTCATGTAATTATGATTTCCTTTCCATTTACCAGTTTGGATTTCTTTTCCCCTCACTcccactttttgtttttaattcattaaggATTTAGGTTTTGCTTTTTGGATGTGGTGTACAGTATAATTCTCATCAGGCCTTTTGGTTCTGTTGGGTTTGTTGAACAATTGTTTTGACCTTGTGCAGGCATTGGCTCTACCAATGatgatcttttttttctttttctgtaaatgtattgctCTTGTCTTTCAATTGGTATTAAGAAATTATAATGCTTTTTTGTTAACAACCAAGGGGCTCAAAGGCTCCTTAAAAGGGAATTCTTGAATGTCTAACCTGGCTTTAACAATACTTGCAATGTTGGCTATTGTCCACCCCCCCACACTTCATTTGCATTTGGGGCAGTATTATAAAGGTTGGTCTTTGTTAATCTGATAGTTACACAATAATCAATTCTGTGTCTTGGATTGGTAAGATCTGGTCAAATACCACAAAATGATGCCTTTCATTACAGGTGAGGTTTTAGTTCAAATGTCAACCTCTTGGAAAGCTGCATGCTTTTCTTCCGCTGTGGATACTGAAGGAAAGTGTTAATTGTGCCTCTCAGCAGTGGTTTATAATTGAGATTTCACGACACAGCTCCCTATTGAAAGACGCTGCAGGATTGTAAGTCATAGCTTTGTTTTAGCCTTCAGTTTGTTCAAGTTATTTGATTTAGATATTAATGCCTGCAAGCTGATGCTGTTCATTATCCTGCAACTTTCAGTGCCTCTGAAGGTGCTTGTGGCTCCAACTACCATTGGGTTGCAATTCAGAGTTCTTAGTCGtgcccttttatttttttttttaatggagcaaatgtttaatatgatCAAAATCAATTTGGAGTTTTAAGATTCCCTAACTTAACATGACGTGTGtgatacagaaaatgtatggGGAGGGGAGGTATTACAAACAAGGATGTGAAATATCACTCTCACTAATCCCTGAAGTATATTAATAACTGTATTCCATTCTagtgaatttttatttttgtagggaATGCTTCGATCTTTTTCTATTTGCATCTCAGTGAGGTCAATAAAGATGAATGACAAAGTA

Function

GO: NA

KEGG:

id description
K06528 LAMP1_2, CD107; lysosomal-associated membrane protein 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87518 lncRNA upstream 123485 13694815 ~ 13696871 (+) True G70054
TU87516 lncRNA upstream 135864 13683043 ~ 13684492 (+) False AMCG00014423
TU87409 lncRNA upstream 439952 13377534 ~ 13380404 (+) True G69961
TU87408 lncRNA upstream 440763 13352333 ~ 13379593 (+) False G69961
TU87406 lncRNA upstream 485171 13334214 ~ 13335185 (+) True G69959
TU87727 lncRNA downstream 339895 14167446 ~ 14171012 (+) True G70221
TU87766 lncRNA downstream 366228 14193779 ~ 14194433 (+) False AMCG00014456
TU87767 lncRNA downstream 370429 14197980 ~ 14199308 (+) False AMCG00014456
TU87784 lncRNA downstream 639153 14466704 ~ 14467744 (+) True G70271
TU87814 lncRNA downstream 1352294 15179845 ~ 15180820 (+) True G70286
AMCG00014425 mRNA upstream 6477 13791149 ~ 13813879 (+) True AMCG00014425
AMCG00014426 mRNA upstream 32280 13749673 ~ 13788076 (+) True AMCG00014426
AMCG00014424 mRNA upstream 72858 13744121 ~ 13747498 (+) True AMCG00014424
AMCG00014423 mRNA upstream 131168 13655238 ~ 13689188 (+) True AMCG00014423
AMCG00014421 mRNA upstream 170282 13630667 ~ 13650074 (+) True AMCG00014421
AMCG00014439 mRNA downstream 55168 13882719 ~ 13903655 (+) True AMCG00014439
AMCG00014440 mRNA downstream 78298 13905849 ~ 13921330 (+) True AMCG00014440
AMCG00014441 mRNA downstream 103331 13930882 ~ 13939105 (+) True AMCG00014441
AMCG00014442 mRNA downstream 117229 13944780 ~ 13965123 (+) True AMCG00014442
AMCG00014444 mRNA downstream 257961 14085512 ~ 14105494 (+) True AMCG00014444
TU86705 other upstream 3811708 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 6403762 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 6470889 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 9168392 4649200 ~ 4651964 (+) True G68475
TU87778 other downstream 509307 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 1848080 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 1848080 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 2301974 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 2638130 16465681 ~ 16469113 (+) False AMCG00014525

Expression Profile