RNA id: AMCG00014439


Basic Information

Item Value
RNA id AMCG00014439
length 4606
RNA type mRNA
GC content 0.43
exon number 14
gene id AMCG00014439
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 13882719 ~ 13903655 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAAAGTTGTGTGTTGTCATGTTCAGTAACACCTGAGTCTGAGCTCCGCTTAATGGCAGCGCTTGTCTGCATGAAAAAGCAGTGAAGATGTAGTCTAGTCTACATCGGTCTACTCTAGATCAGTCTCCCAGTTGACCGCACTGTGAGCACGGTCGGGAGACGTggtggaggaagaagaggaagaggaggaggcaaCATTTGAGGATGACGGCAACATATATTGCCCTATTTGGGCTTCTTCTGACCATGCAAGCAGCAAGCACTGACCACAAGGAATTGGTCAAGCACACCATCAAGCTGCACCGCGGGAAAGGGGCACCAGTGACGCAGGGTCAGAAGTGGTTTATGGAGAACTGCCGGCGCCTGTCGGGGCTGATGAAGCAGAAGAGTGTGGTGATGAAGAAGCTGGGGGTGGCCATTGCAGCAGTGGAGCGCGACATGTCACTGTCCGACCCCGAGAAGCTCTTCCAGGTGCACACCTTTGAGATCTTCCAGAAAGAGCTGAACGAGAGCGAGAACTCCATCTTCCAGGCCATCCATGGCTTTAAGAGGGCTCTGCAGGGAGACTACAAGGATGTAGTCAACATGAAGGAGAGTAGCCACCAGAGGCTGGAGGCTCTCAGAGAGGCAGCCATCAAGGAGGAGCAGGAGTATGTGGAGCTGCTGGCAGCAGAGAAGCACCAGGTTGCGGCCTTGAAAAGCATGCAGCAACAGAACAAGAGCTTGTCCATCCTGGACGAGATCCTGGAGGACGTCAGGAAGGCAGCAGACCGACTTGAGGAGGAGATTGAGGACCATGTCTTCGACTACAACAAACTGaTGAAGGTGAGTGATATCAATGACTCAGATGAAGGGGTTAAGTTGGCGAAGGAGatgaagggtgtgaatgTGGAGGCGGTACTGCGagtggaggaggatgaggaggacaGCCAGAGGAACATGTCTAAGAGGGAGGTAGAGGACAGCCTTGGTCTGAGCATGCTTATCGACTCTCAGAACAACCAGTACATCCTGACCAAGCCCCGGGACTCCACCATGCCTCGGGCTGACCACCACTTCATCAAGGATATTGTGACTGTTGTGATGCTGTCTCTGCCCTGTGGATGGCTCTGTACCTTGATAGGTCTTCCCACGATGTTCGGCTATATAGTATGTGGCGTTCTTCTGGGCCCATCGGGGCTCAACAGCATTAAGGTGGAAACACTAGGGGAATTTGGAGTCTTCTTCACCCTGTTTGTGGTGGGATTGGAGTTCTCCCCGGAGAGACTGCGCAAGGTTTGGAAGATTTCAGTGCAAGGCCCCTGCTACATGACATTCCTGATGGTTGCAGTTGGCCTCTTGTGGGGACAGCTGCTGAAGATCAGACCCACACAGACAGTCTTCATTTCCTCCTGCCTGTCCCTGTCCAGCACGCCACTGGTCTCCCGCTTCCTCGCAGGGAGTGCCAGGGCGGACAAAGAAGGGGACATTGAGTACAGCAGTGTGCTGCTGGGAATGCTGGTGATGCAGGACGTCCAGCTCAGCCTGTTCATCGCGGTCATGCCATCTCTCATCCAGGCCGGGGGAGCGAACTACAGCAGTGTTTTCATGGAAGCCCTGAGACTGCTGATCCTCGTGGGGCAGATCCTCTTCTCCCTGGCAGCTGTCCTCTTGGTGACCGAGTTCCTGGACGTGTCCATGGAGCTTGGATGCTTTTTGGCCGGAGCTCTTTTCTCATCGCAAGGTCACCTTATAACCACAGAGATCATGTCCTGCATTGAGCCCATAAGGGATTTTCTTGCCATCATTTTCTTTGCTACCATTGGTCTGCATGTGTTTCCCACATTTGTGCTTTATGAGCTGACAATCCTGCTGATCCTCACCTTCTCTCTGGTGGTAATGAAGTTCCTCATCGCCATGCTGGTCCTGACTCTCATCCTGCCCCAGAGCAGCCAGCACATCAAGTGGCTGGTGTCCGCAGGCCTGGCCCAGGTCAGCGAGTTCTCCTTCGTCCTGGGCAGTCGGGCACGGCGGAGCGGCATCATCTCTCGAGAGGTGTACCTCCTCATTCTGAGTGTGACCACTCTGAGTCTCTTGCTGGCTCCAGTGCTGTGGAAAGCTGCTACTCTGAAATGTGTTCCCAGAGTTGAGCGCCGGACGAACGCTTGAGAGACGCTCTTTCCATCTTGTTATCTGCTGCTTCAGAAGATGTGCCATGTGCTCCTGGTTTGTATCTCCCTGGTCTAAACCACACATAGGCATAATTTAGACTGCTGATAGATTTTATAGACATGATGCACTACAAGGCCACAAGTTTAACCTGTTACACGGATAAGCCGGAGATATAGGGGTTGTGAGACTGATGCCAATCAAGCAGATAAATCATTCTGTTTATGGTTTCTCTTGTGCTGGTAGAATTAtccttttttaacattgtttacattgttttatatcatGCTTAGATGGCCTGCCATACACTTCCACATACAGACAAGATTTATCATGTCATTGAGCAAGGCAGtattacaagaaaatgtaattcagattCTTAGAATGTCGACATTTTAggggactttttttttgttaaatcataTTTGAATGGTATGATATAGCAAGATacgctatttatttatttatttattaaaaatccaTATCAGGGCCTGTTATTTAATGCTTCTAACAAGACGGTAACTTAAAAGTTAATTTTACCTTAATGAGGGTAGTGTTCTaaaatgattttgatttaaCAGATTTTCTGTGAACAGTGATCAGGTGTCAGGTGACAAAGTTTACTTCGAGTTGCgtaaaaagcaaatgtaattaatatgcatATCTTAAATTCTTCTGAGCAACCGATAGGGACCACATAAAAGCAACCGAAAAATGTCCATGTCAGAGTGGCACAATAGATAGTCATTCCTGCAATGCTCCACCTATGTAAAAGAGGCTGCATTGACAATGATCTTAGTTATGATTTCTCATTGTTCTGAGACAAGGTGACTTTACACATGACAGCATTTCCGCTGTTAGATCACAAGCAGAAGATGAAGTGGCagtttgtatgtaaatattagCATTAAGGAGCTGTGACACAGCTGCCTATCAGCTTTTACCATACTTGTCTGAGCAGGTGCTTCCTCAAGGTTGTTTtggatataaaaaatatttttgtttttgagtcaatattttttttttttatatatgagCCTTAtaggaaaattaaacaaagcatttgACTGCTTGTGCAGAATGTGTTCCAGTCTCTATTATTTATGCCAAGTCTCCTAGTTTGGATAGTGTTTTTACCTCTGCATATTCCTATCAGAAGGAAAGATAAAATtgcacaatacaaacaaatgttgCTAATATAGTCAGGTACCCAGTCCTCTTCCTGGATGGACCAAAGCTATCCTTGATTTTGGGATGATATAATCAGCctaaattatgttgtttttgttgttctttaaattattctatctcagaaaatgtaattctgtaaaGAATAAGTgccttaaaaatacattccacTACATTCCTCCCAATCAACCGTATATAGTGCGGTTTCCAACCTCATCATGTTTGCAACTATGCAGTTCTCTGTCCCTCATGTTTTTCAGCAGGCTGTGGGAGCAGGTTCTGTTTTCTGTAGCATACCACAGGTTCAGTATACTTAtagacatgcatttttaaaacgcATTGTCCGATTTACTACAGCAAAGTGGATTCTCTAAGCTAGTGCATTGTAAATATTACCATATATCTGACTAAAAGACATTAATGAAATTCTAAGCACAACCAAAgagactttcatttttttttttgtaatcccATGAAACACTGCAATTTAAATGATCATCTCTTACCAAATGTTGCCTTTTTGCCATTCTCTTTTTGCATAAATGTTATGAGCATTGCTGCTTTATTTCTTCAAATAGAGATTTTAGTCTTATGCTTTAttatatagtttaattatagCCTTGCGTTACAAGAAGTTATTGTTTGTACGTACATAGTAATTCTGTTGGGATAGAAATTAACAGTGCTGCTGTAGTTCTTTGCTGAAAGTacctaaataaattaaattgcacaGTGGTTTTTTGGggataatttgttaattaaaaagtacCTGTAACTGGACAGGCATGGTGTTCAATAGATTGCACTTCTGAGTTTTGAGACAGTACAAGGTTTATGAAGGTAGACTTTTCTGGTGGCATGTTGTACTGTTCTGACCTACTCAATACATTGTACTCATAACCTGGAGTTAAAAGGGGAATACTTACAATCTTTATCACAAGCTAAATGTAACGAGTTGTTATGTATTTTACCCATTTttagggttttattttgtagaatCAACAAATTCCAGGAGGtatgtttataaaatatttttagactTAAGCATTACAATTTTATGTTTCTAGAAACGTTTTAGGGAGAAGTGGGGGGGCCTGAAAATATAAATCTAGGATATGTGAATTTGTGTTTGctcacaaatgtaattatttttgtatgtgttgatATCTTGACCGTGTACAATAAAATggatacaaattattaaaattacattgcCTTGAAGTTGGTTTTGAATTACTTCACAATTTCTGAATGAACGAATATATAGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87518 lncRNA upstream 185848 13694815 ~ 13696871 (+) True G70054
TU87516 lncRNA upstream 198227 13683043 ~ 13684492 (+) False AMCG00014423
TU87409 lncRNA upstream 502315 13377534 ~ 13380404 (+) True G69961
TU87408 lncRNA upstream 503126 13352333 ~ 13379593 (+) False G69961
TU87406 lncRNA upstream 547534 13334214 ~ 13335185 (+) True G69959
TU87727 lncRNA downstream 263791 14167446 ~ 14171012 (+) True G70221
TU87766 lncRNA downstream 290124 14193779 ~ 14194433 (+) False AMCG00014456
TU87767 lncRNA downstream 294325 14197980 ~ 14199308 (+) False AMCG00014456
TU87784 lncRNA downstream 563049 14466704 ~ 14467744 (+) True G70271
TU87814 lncRNA downstream 1276190 15179845 ~ 15180820 (+) True G70286
AMCG00014427 mRNA upstream 55168 13820356 ~ 13827551 (+) True AMCG00014427
AMCG00014425 mRNA upstream 68840 13791149 ~ 13813879 (+) True AMCG00014425
AMCG00014426 mRNA upstream 94643 13749673 ~ 13788076 (+) True AMCG00014426
AMCG00014424 mRNA upstream 135221 13744121 ~ 13747498 (+) True AMCG00014424
AMCG00014423 mRNA upstream 193531 13655238 ~ 13689188 (+) True AMCG00014423
AMCG00014440 mRNA downstream 2194 13905849 ~ 13921330 (+) True AMCG00014440
AMCG00014441 mRNA downstream 27227 13930882 ~ 13939105 (+) True AMCG00014441
AMCG00014442 mRNA downstream 41125 13944780 ~ 13965123 (+) True AMCG00014442
AMCG00014444 mRNA downstream 181857 14085512 ~ 14105494 (+) True AMCG00014444
AMCG00014443 mRNA downstream 234751 14138406 ~ 14143073 (+) True AMCG00014443
TU86705 other upstream 3874071 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 6466125 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 6533252 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 9230755 4649200 ~ 4651964 (+) True G68475
TU87778 other downstream 433203 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 1771976 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 1771976 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 2225870 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 2562026 16465681 ~ 16469113 (+) False AMCG00014525

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00000030 False 1998 mRNA 0.60 12 NC_007112.7 218524 ~ 225137 (+)
grasscarp (Ctenopharyngodon idella) CI01000299_06208641_06214104.mRNA True 2021 mRNA 0.59 12 CI01000299 6208612 ~ 6214104 (-)