RNA id: AMCG00014440


Basic Information

Item Value
RNA id AMCG00014440
length 2821
RNA type mRNA
GC content 0.41
exon number 12
gene id AMCG00014440
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 13905849 ~ 13921330 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agtttttggTTTCCTGTTTGGTGTGCGGATTTAgacctcctcttcctcttcactgcCAACAAAAACAGGAGCAGAAGAGAAGCTGAATGACGGGAGTGCAGTTGGGAGCTTTTCCAGAACATCCTGAGCCATTCTTCCTTTATAAGACATCTTCACATCCCTTCTTCCAGAATTTGGTAACATGGCAAAAGATGCTGGTCTAATAGAAGCAAATGGAGAGTTGAAGGTTTTTATAGACCAAAATCTCAGCCCAACTAAAGGTATAGTGTCACTGGTGGCCGTTCACCCGTCTGCAGTCACGACGCTGGGGAAGCAGCTCCTGCCGAAAACGCTCGGTCCCTCCAATGTCAACATCACACCACACATGGTCATAGGCACCCCTCAGAGATCCACAGGCACAAATGCCATCCTGGTGGGCAGCCCCCACACACCAAACACCCAGTTCATCACACAGAGCCAAGCGGCCGACTCCTCGCCATGGTCCACTGGaaAGCGGAGTAAGAAGGGAGAGAAGAATGGCAAAGGGCTCAGACACTTCTCCATGAAGGTGTGTGAGAAGGTTCAGAGGAAGGGAACCACTACCTATAATGAGGTGGCCGATGAACTAGTGGCCGAGTTCAGCAACACGGACAACCACATCTCCCCTAACGATTCAcatgTTTATGACCAGAAGAACATCAGACGCAGAGTTTATGATGCCTTAAATGTGCTGATGGCGATGAACATCATCTCCAAAGAGAAGAAGGAAATCAAATGGATAGGACTCCCCACCAACTCAGCTCAGGAATGTCAGAATTTAGAGgtgGAGAGACAAAGACGGCTTGAaagaataaagcaaaaacaatccCAACTACAAGAACTCATTCTACagcaaATTGCCTTTAAAAACCTTGTGCAGAGAAACCGTCAAGAAGAGCAGCGGACGAATAGACCCCCTCCTCCCAACTCAGTCATTCACTTACCATTCATCATCGTGAACACCAGCAAGAAGACAGTCATTGATTGCAGCATCTCCAATGACAAgtttgaatatttatttaattttgacaaCACATTTGAAATCCATGACGACATCGAGGTGCTGAAACGCATGGGCATGGCATGTGGCTTAGAGGCGGGAAAGTGTTCACCAGAAGACCTAAAGACCGCCCGGAGCCTCGTGCCCAAGGCTCTGGAACCATACGTCACAGAAATGGCTCAGGGATCAATAAACAGCGTGTACATTTCTGGGGGGATGTCCTCTAATGGTGGCCGGTACCACACTGGGAGtgaCAGCGGTGCTGATGGCACAATGGCCTCCAGCTCGAACGGGTCCCACTACAGCGGCTCTAGGGTGGAGACTCCTGTGTCCTACATGggtgatgaagatgaagaagatgatgattatgatgagaATGATGATGAAGACTAACCCCGCCCACCACAACCTCTGTTTCCCACAACACCACAGCCATCTTCAGGAGTATCCCCTCTGTCGCTCTTGCACTCTCTACTTTGGCgcctgtgattttttttgtttgtttgtttttatttcatggcTAGGCAGTCTGTTATAATAGCCTAAAGACCAGATGAAAGACATATTGTAGAATTCTGTTTGGCAAATGCTACAGTGGTGAGATGTTTTAACTCTACCCTGTCCAGTCGCCTATAGTGAAGAGTCCACAGATGAGGAGCAACGTGCTGGCCAGTGGAGTTTGGCAGCACTGTCAAATGCACGCATTCAGTCCAGTACTGTTGTCGAGATTGTCATCTCAACCAGTCCCCGGTCAGGTTTGATGCAGAGCAAGCTACTAGGCAAATAGAGAATGATGTAGATAGGGATCcttaatgtttgtgtgttttttttattttttattttattatttttatttttttttgttaaattcagAATCCTCTTGAGTTGCCCTTGGTTCATCTTAACCCATCTCAGTTCATTATTACAAAGGGATTCCCTCTAAAGCAAACAAGTCTGTTCTTTGAGAAACCTGTACTGCAGTATCggtataaaataaagtatgtttattttttatttatttcttgggaAGTGTCTGCAgggtatttgattttattttttttttatttaggctGGTTGCCTCCAAAGACTGATAGGCAAAACCTAAATGCTCAGTTGCATCGGAGAATCTTTTTTTTTNNNNNNNNNNtttttttattactgtttgtgTAAAACAGTTCCATGGTTTTCTGGTTTGTACGTTTGGGTTTGTATAATGAGTTCACTTTTTCTtccccattttgttttgttttactgccaTTTTCAGGGCAGCTATATTAGAGGATTTGTTGACAGTTGAAATGACTAGGTTTATAGAAGGTGCCTGAATTCTCACAGGCAGACATCTgaaacttattttattgttgtgtttacatgcatacaaatctcctttttaaacaaaaaatgtactgaTACTTAAGTACTTTTTTCTGTAATCTAATAtaagtttgaaattaaatatagagAATGTTTTAACAGTTTTTGTAACTCAGATTTGTCAGTTTTTCTTTGGaagatttttaaaagttttataaAGCAGTTGCTGAACAGgtagtttccttttttatatttagatatataaatatatatatatacacactgattACTTCACAGCTACAGTAAGAGAGCAAGAACTGTTGGCCTCGTCCTGTTAAAAGAcgcaagtctttttttttttttttaataagacaaCAGAACGTTTCTGTAATTGATTGGAGTTCACTGAGACTTCATTGGTCTGATCTGTTCAATTTGCTTCTGTTAGATTTATTAATAAACGGAGCATgggcattttttttaagaaaa

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0008134 transcription factor binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0003713 transcription coactivator activity molecular_function

KEGG:

id description
K04683 TFDP1; transcription factor Dp-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87518 lncRNA upstream 208978 13694815 ~ 13696871 (+) True G70054
TU87516 lncRNA upstream 221357 13683043 ~ 13684492 (+) False AMCG00014423
TU87409 lncRNA upstream 525445 13377534 ~ 13380404 (+) True G69961
TU87408 lncRNA upstream 526256 13352333 ~ 13379593 (+) False G69961
TU87406 lncRNA upstream 570664 13334214 ~ 13335185 (+) True G69959
TU87727 lncRNA downstream 246116 14167446 ~ 14171012 (+) True G70221
TU87766 lncRNA downstream 272449 14193779 ~ 14194433 (+) False AMCG00014456
TU87767 lncRNA downstream 276650 14197980 ~ 14199308 (+) False AMCG00014456
TU87784 lncRNA downstream 545374 14466704 ~ 14467744 (+) True G70271
TU87814 lncRNA downstream 1258515 15179845 ~ 15180820 (+) True G70286
AMCG00014439 mRNA upstream 2194 13882719 ~ 13903655 (+) True AMCG00014439
AMCG00014427 mRNA upstream 78298 13820356 ~ 13827551 (+) True AMCG00014427
AMCG00014425 mRNA upstream 91970 13791149 ~ 13813879 (+) True AMCG00014425
AMCG00014426 mRNA upstream 117773 13749673 ~ 13788076 (+) True AMCG00014426
AMCG00014424 mRNA upstream 158351 13744121 ~ 13747498 (+) True AMCG00014424
AMCG00014441 mRNA downstream 9552 13930882 ~ 13939105 (+) True AMCG00014441
AMCG00014442 mRNA downstream 23450 13944780 ~ 13965123 (+) True AMCG00014442
AMCG00014444 mRNA downstream 164182 14085512 ~ 14105494 (+) True AMCG00014444
AMCG00014443 mRNA downstream 217076 14138406 ~ 14143073 (+) True AMCG00014443
AMCG00014445 mRNA downstream 229969 14151299 ~ 14157726 (+) True AMCG00014445
TU86705 other upstream 3897201 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 6489255 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 6556382 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 9253885 4649200 ~ 4651964 (+) True G68475
TU87778 other downstream 415528 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 1754301 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 1754301 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 2208195 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 2544351 16465681 ~ 16469113 (+) False AMCG00014525

Expression Profile