RNA id: AMCG00014441


Basic Information

Item Value
RNA id AMCG00014441
length 1692
RNA type mRNA
GC content 0.50
exon number 7
gene id AMCG00014441
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 13930882 ~ 13939105 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGATATAGGGGGTCTGGAGACTGTGGTGGCCAACTCGGCTTACATATCAGCCCGAGCAAGCTTTGATGGCTCCAGCAATGCATCAGCCACCCGGGACAAGAAGTACCGTGCCAAGCTCAAGCTTCCCCACATCACCCAATGTGAGGACCTGACCGAGAAGATCGACTTGGAGTATGACAGCATCTGCAACCAGCAGCCCATTGGCAAGCGTCTCTTCCAGGAGTATCTGGAGACGGTGCCCGAGTACAAGCCTGCCTCTAAAGTGTGGAAGGATATAGAGGAGTATGACACTGCTGAGGACAAGGACCGTGTACAGAAAGCCTCCAAGATCATCTCCAGATACATGGTGTCCACCGCCAAGCACTACTGCTCCTTCCTGCAGGAGAACACTGTTACCAAGGTGAATGAGGAACACCAGAATGCCAAGGATGACCTTTTTGTGAAGAGTCTGGAGGAAACCCTGGCTTTTCTCAATGGTGTCCCTTTCTCAAATTACAAGGAAACCATGTACTTCAAGAGGTTCTTGCAGTGGAAGTGGCTAGAGGCTCAGCCCATCGGTGAGGACTGGTTTTTAGATTTCAGAATCCTGGGCAAAGGAGGGTTTGGTGAGGTCTCTGCCACCCAGATGAGGGGCACGGGGAAACTTTATGCCTGCAAGAAGCTTAACAAGAAGCGCCTCAAGAAGAGGAAAGGCTATGAAGGAGCCATGGTGGAGAAGAGGATCCTGGCCAGAGTGCACAGCCGCTTCATTGTGTCTCTGGCGTACGCCTTCCAGACCAAGACAGATCTGTGTCTGGTAATGACCATCATGAATGGAGGAGACCtaagGTACCATATCTACAATGTCGATGAGAACAACCCTGGCTTTGAGGAGGCCCGAGCCTGCTTCTACACAGCGCAGATCATCTGTGGGATGGAGCACCTCCACCAGAAGAGGATCATCTACAGAGATCTCAAGCCAGAGAATGTGCTTCTGGACAATGATGGTAACGTGCGTATCTCCGATCTTGGCCTTGCAGTGGAGCTGAAGGACGaccaaacaaaaatcaaaggtTATGCTGGAACTCCAGGTTTCATGGCTCCTGAGCTCCTGAAAGGCGAGGAGTACGACTACTCTGTGGACTACTTCACCCTTGGAGTGACGCTGTATGAAATGATTGAAGCCAAGGGTCCATTTCGAACCCGAGGAGAGAAGGTTGAAAACAAGGAGGTTAAGAAGCGCATCCTGAACGATCCAGTGGCTTACTCTGAGAAATTCAGTGAAGAAGCCAAGTCTTTTTGTGAGGCGCTCCTGGCCAAGGAAGTGGACAAGCGATTGGGCTTTAAGAATGGGAACTGCGAAGAGCTCAGGGTGCATCCTTTCTTCAGCAGCATCAACTGGAGGAAACTGGAAGCAGGTATTCTGCCACCACCATTTGTTCCAGACTCAAAAACTGTCTACGCCAAAGACATCCAGGATGTAGGGGCCTTCTCCACAGTGAAGGGTGTCAACCTTGATGAGCCAGACAAAGAATTCTTTGACGAGTTTGCCTCAGGCAACATCTCCATACCTTGGCAGGAGGAAATGTTAGAAACTGGTGTGTTTGGAGAGCTTAACATATGGGGTGCTGGCGGAACGCTACCCAATGATTTGAGGAGAGAGTCAATTTTCGAACCTCCGCCAAAGTCaggtgtgtgtagtgtgtcaTAA

Function

GO:

id name namespace
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0050254 rhodopsin kinase activity molecular_function
GO:0004703 G protein-coupled receptor kinase activity molecular_function

KEGG:

id description
K00909 GRK1_7; rhodopsin kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87518 lncRNA upstream 234011 13694815 ~ 13696871 (+) True G70054
TU87516 lncRNA upstream 246390 13683043 ~ 13684492 (+) False AMCG00014423
TU87409 lncRNA upstream 550478 13377534 ~ 13380404 (+) True G69961
TU87408 lncRNA upstream 551289 13352333 ~ 13379593 (+) False G69961
TU87406 lncRNA upstream 595697 13334214 ~ 13335185 (+) True G69959
TU87727 lncRNA downstream 228341 14167446 ~ 14171012 (+) True G70221
TU87766 lncRNA downstream 254674 14193779 ~ 14194433 (+) False AMCG00014456
TU87767 lncRNA downstream 258875 14197980 ~ 14199308 (+) False AMCG00014456
TU87784 lncRNA downstream 527599 14466704 ~ 14467744 (+) True G70271
TU87814 lncRNA downstream 1240740 15179845 ~ 15180820 (+) True G70286
AMCG00014440 mRNA upstream 9552 13905849 ~ 13921330 (+) True AMCG00014440
AMCG00014439 mRNA upstream 27227 13882719 ~ 13903655 (+) True AMCG00014439
AMCG00014427 mRNA upstream 103331 13820356 ~ 13827551 (+) True AMCG00014427
AMCG00014425 mRNA upstream 117003 13791149 ~ 13813879 (+) True AMCG00014425
AMCG00014426 mRNA upstream 142806 13749673 ~ 13788076 (+) True AMCG00014426
AMCG00014442 mRNA downstream 5675 13944780 ~ 13965123 (+) True AMCG00014442
AMCG00014444 mRNA downstream 146407 14085512 ~ 14105494 (+) True AMCG00014444
AMCG00014443 mRNA downstream 199301 14138406 ~ 14143073 (+) True AMCG00014443
AMCG00014445 mRNA downstream 212194 14151299 ~ 14157726 (+) True AMCG00014445
AMCG00014446 mRNA downstream 221531 14160636 ~ 14160842 (+) True AMCG00014446
TU86705 other upstream 3922234 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 6514288 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 6581415 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 9278918 4649200 ~ 4651964 (+) True G68475
TU87778 other downstream 397753 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 1736526 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 1736526 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 2190420 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 2526576 16465681 ~ 16469113 (+) False AMCG00014525

Expression Profile