RNA id: AMCG00014444


Basic Information

Item Value
RNA id AMCG00014444
length 6420
RNA type mRNA
GC content 0.44
exon number 29
gene id AMCG00014444
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 14085512 ~ 14105494 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTTACTGCAGATTCAGAGGTAACACGCCACCTTGAAagatatttctgtatttgtgggTTTGGTTGATTTCTTGATTTTAAGGTCTTTCTACCCctttgaagaaaaatgtaatttttctcttgttttccgATACTCCGTCTTCACTACTACTCTGACACTTTGGGATCTTAGATTAGAGGGATCCTACCTCTGGAAGGCTTGAGGAGTCTTCAAGGGGATTGCACGTTACATTTTTGAtattatgttcttaatattttggttattgttttaaaaaggtgttAAGTAATTTCTACCTATTCAGAGGGTTAGTGTTGAAGAACAATGTGCAGTTTTAAGTTTAGTGACCACTTTGCATTAAAGCAAAGTACCAGCAAAAGCTCCCCAGGTCATTCTTACTAGCTTCCTCTGAGCAAAACTTTCCACGACAGCAACTGAGCATTAAAGTCTGCCCTCTAGAggaaaaatgcatgtattactCTGgcaattaacaaacaaactggCAGAGCACAAAGCTCACCTTCAGTAGGCAATAACATATTGAATGAAACTctatttagatatatatatatatatatatatatatatatatatatatattgtagttttACTGGTATACGagttatgttataaataaatataatgtgtccacataatataaataacccCCACACACTGCCTGTACAACACACTCCACTATACAAACACTACTTTACATGTCATGGAGGTATTCAAAGCAGATCTAACCCTTCTCTCTTAAAGTTACTTTTGGCTGCAAATGGTGCATAAAGAAAACGACACTAAAGAGAGAGCTGCTTTCACTTTACtcacttttgaaaacaaaacaaaaaaaacatgtctgcagTGGATTTTAAACTCCATAAAAACAGAATGTCAGTGGGGATTAAATGCATTACTGTTCCTGTGttattttccattacatttttcctATTCAAATCAGTGGAGCAGCATTCCAGAGAAGTCAGTTCAATCAAATGCAATCACTGAAGTCTTctgcataattataataaaatactttaaaataaaaccacagaagGAAAGGGGTAGGCTATAAACAGCAGGCAGGCCAGGACAATAGAAAACAGTCACTGTCTCTTTAAGAATTTCCTCAGACCCATGCTCAGTGTGTGCTGGCTTCGGTCTTTTTCATTTCTGCTCttgcttgttgttgttaatCATCGTCATTTTGTCTGGTCATGGCTGCTAATTGTATTGAAGATACGTTCCCTTTCCACGGACTTCTTCCCAAAAAAGAGACCGGAGCTGCGTCTTTCCTCTCCCGCTACCCGGAGTACGATGGCCGGGGCGTCCTCATTGCGATCCTCGATACCGGCGTCGACCCAGGGGCCCCGGGCATGCAGatAACATCTGATGGGAAGCCCAAGATAGTGGACATCATTGACACAACAGGCAGTGGAGATGTGAACATGTCTACAGTGGTGGAGCCTAAAGATGACATCGTTCTTGGCCTGTCAGGGAGAACACTCAAGATTCCCACAACATGGATAAATCCATCAGGAAAGTATCACATTGGTGTCAAAAATGGCTATGAGTTTTTCCCAAaagctctgagagagagaatacagAAGGATCGCAGGGAGAAGCTGTGGGACCCGGCCCATCGCGCGGCACTGGCTGAAGCGTGCCGGAAGCAGGAGGAGTTTGACAGCACGCACACCACTCTCTCTCAGATGGACAAGCTGTTCAAAGAGGAGCTGCAGAGTCACACTGAGCTGCTGACGTCCCTGGAGAAGAAATACAGTGACCCCGGGCCGGTGTATGACTGTGTGCTTTGGCATGATGGAGTGACATGGAGAGCGTGTGTGGACACCTCTGAGTGTGGTGATCTCAGCGGCTGTACGGTGCTGCGGAGCTACAGAGAGGGTCAGGATTACGCCTCGCTGGGCAGCTCTGAAATGCTCAACTATTCGGTGAACATTTACGACGAAGGAAACACACTGTGCATCGTGACCAGTGGAGGCGCCCATGGCACCCATGTAGCCAGTATCGCCGCAGGATATTTCCCAGAGGAGCCGGAGAGAAGCGGAGTTGCCCCAGGGGCTCAGATCCTGGCCATCAAGATTGGAGACACCAGACTGAGCACCATGGAGACTGGCACTGGCCTCATCAGAGCGATGATAGAGGTTATCAATTACAAGTGTGACCTTGTGAACTACAGCTACGGGGAGGCAACACACTGGCCAAACTCTGGGAGAATTTGTGAGGTGATAAACGAAGCTGTATTGAAACATAATGTGATCTACGTATCCAGTGCTGGCAATAATGGCCCGTGTCTGTCCACTGTGGGATGTCCAGGAGGGACTACGTCTAGTGTGATAGGTGTTGGCGCCTATGTTACCCCTGACATGATGATAGCTGAATATTCTCTTCGAGAGAAGCTTCCAGCAAACCAGTATACCTGGTCGTCACGGGGACCCAGCACTGACGGAGCTCTGGGTGTGAGTATCAGTGCACCGGGGGGCGCAATCGCGTCCGTGCCCAACTGGACTCTGCGTGGCACTCAGCTCATGAACGGGACATCCATGTCTTCCCCCAATGCCTGCGGAGGCATTGCCCTGGTGCTTTCAGGTGTGAAGTCCAATGGTATCCGACCCACTGCAGCGGCTGTCCGAAGAGCCCTGGAGAACACGGCAGTAAAAGTAGAAGATATCGAAGTATTTGCACAGGGACATGGAATTATTCAGGTTGATAAGGCCTATGACTACCTCATTCAGCATGCATCCCTACCAACCAGTAATCTGGGTTTCACAGTGACTGTAGGAAACCAGCGTGGCATCTACCTCAGGGACCCTGTCCAGATCTCTTCACCCTCTGATCATGGAGTGGGAGTGGAGCCTGTCTTTCCTGAAAACACAGaaaacactgaaagaatATCCCTTCAGCTCCATTTGTCACTGACCTGCAGCGCTCCATGGGTGCAGTGTCCCTCCCACCTGGAGCTGATGAACCAGTGCAGACACGTCAATGTCAGAGTGGACCCCCAGGGGCTCAGGGAAGGACTCCACTACACAGAGATTTGTGGCTATGATGTAAAAGACCGGGCGACAGGTCCGCTGTTCCGAGTACCAGTGACGGTTATTATTCCCACCAAGGTTACTGAATCCTCTGGCTATGAAGTGCCTTTCAATGATGTGCATTTCAGACCTGGTCAGATCAGACGACACTTTATCACAGTTCCTCAGGGAGCCTCCTGGGCAGAGATCACGTTAACTTCACACTCGGCAGATGTGTCTTCGAAATTCGTCCTCCACGCTGTTCACCTCGTAAAGCAAAAAGCGTACCGTGCCAACGAGTTCTACAAGTTCTCATCCCTCCCGGAGAAGGGGGCCCTGACAGAGGTGTTCCCGGTCCTGCCAGGGAGGACCGTAGAGGTTTGCATCGCACGATGGTGGGCAAGCCTGGGAGATGTCACGATTGATTATTCGATTTCTTTCCACGGTTTGACCTGTTCTACCTCACAGCTTCACATTCATGCATCAGAAGGTATTTCTAGCTTTGAAGTGTTGTCCACATTGAAATATGAAGACATCTCACCAAGCATAAACCTTAAAAACTGGGTACAGCCTCTGAGACCTCTTAGTGCCAAGACAAGGCCTCTTGGATCCCGGGATGTTCTGCCAAATAATCGCCAgctttatgaaattattttgaCTTACAACTTTCACCAACCGAAGAGTGGTGAAGTGACCCCTAGCTGCCCATTGCTGTGTGAGCTGCTGTACGAGTCTGAGTTTGACAGTCAGCTCTGGATGCTTTTTGACCAGAATAAGAGGCTGATGGGGTCGGGAGATGCTTACCCTCATCAGTATTCCTTGAAGCTAGAGAAAGGAGACTACACCATACGGTTTCAGGTTCGCCACGAACAGATCAGTGAACTAGACCGCCTTAAGGACCTGCCCTTCGTCATTTCACACAGACTCTCCAGCACACTAAGTCTTGATGTGTTTGAGACTCAAAGGAATGCCCTTCTAGGCAAGAAGAAGGCAAACACCATAACTCTACCACCCAACTGCTCACAGCCATTCTTTGTGACATCCCTACCAGATGACAAAATACCGAAAGGGGCTGGACCTGGGTGTTATCTCACTGGTTCTCTCACAGTGCCAAAGAGTGAATATGGGAAGAAAGCAGATGTACTGCCCGTCTTTTACCATTTGATCCCATCGCCCAATAAAATGAAGAACGGTGgcaaggagaaggagaaggatggagaaaaggagaaggagaaggatgTGAACGAGGAGTTTGCAGAGGCCATAAGGGATCTGAAGATACAGTGGATGACAAAACTGGAGACCAACACTGTTTACGATGAGTTAAAAGAGCACTTTTCTCTTCACCTTCCTCTGCATGTGACACGACTGCATCAGCTAGACTCCGAAAAGGAGCGAATGAAGAGGCTAGGGGAGATCCTGGCAGCTGCAGACATCGTCATCTCCCACATCGATCAGGTGGCCCTGGCGGTGTACCTCACCATGAAGACCGACCCTAGGCCAGATGCGGCTTCAATTAAAAGCGACATGGAGAAGCAGAAGTCCTCGCTGATCGACGCACTGTGCAGAAAGGGCTGCGCGCTGGCGGACCAGCTGCTCCAGCTGCAGGAGCAGGACGGGGCCATCTCAGGGGAGGTGGGCAGCACCGAGGACGACCCCGAGGGGGCCTTTAAGAGCCTCGCCGACACCTTCTGGGACGTCCAGAAGTGGGCGGATCTTACCGACACTAAGgttttgaTGTTTGCTTATAAACATGCATTAGTGAATAAAATGTATGGAAGAGCCCTTAAATATGCGTCCAAGATTGTTGAAGACAAACCCAGCAAAGAGAACTGGAGAAACTGCATTCAGCTCATGAAGTCCCTTGGATGGACACATTGTGTGTCTTTTGCTGAAAACTGGCTTCCAGTTATGTACCCTTCAGACTTTACACCTTTTTAAAGACTACAAAATGCCATTACATATTGGGCAATTCCACACTTCACGAAGAGAATACTGTCCGaataaaatgtcttttttataTCTGTCAAGGATGCATTTGTCCCTTAACTCTAATAATTAAACAGTCGACCATGTTACAGTTTTAACTAGAATGTcaattttggtttgtttgtcagcattttgaacaaacacacacaatacccGAACGGTCCCTAATCATCAGTGATTAACTGAAAGGTGCAAACTTCTTTCACACTTAACTTGTTTTATGTTGACAAACCGGAAGGTCCTTAACTACAGCAGTGATGATATATGTTGAAGACGTGTTTACCAAATACTTTCAATTCTGTatgtttatttcagaataatCCTGAAAATGATATAGCACCTGAAATCTGTGACTTTACGATTCAGCAAAGTCCCCTAGAACTCAACCTTACCTTTTAgttgaatgtttaaaaagaaaaagaaaccagtTCTTCTGAAAAGTCCCTCCGTATCTGCACCTCACTGCAGACATCAAGGAGTCATTGTCCGAGTacttacaataaatatttaaatgtgcattaatatacatatttataacgTATAATAAGCTGAGCaagcatatttgtatttgttcagatTTAACACAATGTATGTAatttatgcatgtattgttttctgttttaagatGAGTTGTTAAATGGTTTCTGTTTCAAAACATGGAGCATCAGCATCAATACAGAGTCCGATCTCAGGCTTTCCACTGGTATAAAACTGCtgcattgaattattattttattataatggtttatttattatcagatgCCTTCACCCAGGGCAATTTAGGATGCTTTCATTTCACATGGAATTGCCCCTTTTTGCCCTTTtcccatttttgttgttgttctttataCAGTGCtgatggaaaatattttaataatttggatttctgttttataaagcatgttttattttataagggaatgcctttttaaaaatatatactgttcaGAATGAATAATAGCAATCTCACTGTAAATGCCATAGGTTAAATTTGCATGCTAGGCTCCCTAGATTCCTAGTTCAAGAGAGCGATCACATTTCTGtatataaattgttttaattcaacTGGCATTCAGGGTTTTACAGAAAATTCCAGTTAATAAGTTCTAAAACGGCCTTAAAATTCAAATTGTGCTGTACTCAATTGCTTCTGATGTTTGAACCCTGTGATTAAATATATCATAGTTACTTTTATTGTTACAACATACAAGAATGTTTTAGATTATTTATGAACTCTCTTATTTATAAAGTCACGGTAGCTAGagactatttttaaagaattgCATTGATTTTACACATAAGCTGATCATATTTTATGACAATTATTCCATAGCAGCAGatggaaaagttttttttttgttatgaagTCCACTGTATACAATTGtcacacaaaacata

Function

GO: NA

KEGG:

id description
K01280 TPP2; tripeptidyl-peptidase II

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87518 lncRNA upstream 388641 13694815 ~ 13696871 (+) True G70054
TU87516 lncRNA upstream 401020 13683043 ~ 13684492 (+) False AMCG00014423
TU87409 lncRNA upstream 705108 13377534 ~ 13380404 (+) True G69961
TU87408 lncRNA upstream 705919 13352333 ~ 13379593 (+) False G69961
TU87406 lncRNA upstream 750327 13334214 ~ 13335185 (+) True G69959
TU87727 lncRNA downstream 61952 14167446 ~ 14171012 (+) True G70221
TU87766 lncRNA downstream 88285 14193779 ~ 14194433 (+) False AMCG00014456
TU87767 lncRNA downstream 92486 14197980 ~ 14199308 (+) False AMCG00014456
TU87784 lncRNA downstream 361210 14466704 ~ 14467744 (+) True G70271
TU87814 lncRNA downstream 1074351 15179845 ~ 15180820 (+) True G70286
AMCG00014442 mRNA upstream 120389 13944780 ~ 13965123 (+) True AMCG00014442
AMCG00014441 mRNA upstream 146407 13930882 ~ 13939105 (+) True AMCG00014441
AMCG00014440 mRNA upstream 164182 13905849 ~ 13921330 (+) True AMCG00014440
AMCG00014439 mRNA upstream 181857 13882719 ~ 13903655 (+) True AMCG00014439
AMCG00014427 mRNA upstream 257961 13820356 ~ 13827551 (+) True AMCG00014427
AMCG00014443 mRNA downstream 32912 14138406 ~ 14143073 (+) True AMCG00014443
AMCG00014445 mRNA downstream 45805 14151299 ~ 14157726 (+) True AMCG00014445
AMCG00014446 mRNA downstream 55142 14160636 ~ 14160842 (+) True AMCG00014446
AMCG00014447 mRNA downstream 56631 14162125 ~ 14163322 (+) True AMCG00014447
AMCG00014456 mRNA downstream 84070 14189564 ~ 14205014 (+) True AMCG00014456
TU86705 other upstream 4076864 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 6668918 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 6736045 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 9433548 4649200 ~ 4651964 (+) True G68475
TU87778 other downstream 231364 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 1570137 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 1570137 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 2024031 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 2360187 16465681 ~ 16469113 (+) False AMCG00014525

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000299_06037407_06054548.mRNA True 4960 mRNA 0.52 27 CI01000299 6036217 ~ 6054548 (-)