RNA id: AMCG00014458



Basic Information


Item Value
RNA id AMCG00014458
length 935
RNA type mRNA
GC content 0.47
exon number 6
gene id AMCG00014458
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 14223516 ~ 14235412 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


aCACAGTGGATGGCAATACAACTAGTaatggaaaaaagaagaaggaggaaGCTGACCCCACTGTTAGGATGACCATGCTGGGGATTCCCACCTTTCCCACAGCGGACTCTGAGCTGGGATACTTCTATCAGACTGTTACGAAGGCTGTGCAGAAATGGTTCAGTTTGTTTGGTTGGCCAAAAGGTCCTCACCCCATTACCATCCCACAGACTCTGAGAAGTTCTGTATGTAAAGTTCAGACATCAGGCTCAGCAGTATACAGAAAGACTTCCCACCAGATCAACCATGGGAAGGCCACATTCACCATCTATGACATGCTGCTGCACCTCAGTGGACAGATGTTGCCCGGGATCAATACAAGCCAATCGCTACCCTGCGACCTCACGAAGAGAGTTCTGCAGCTTCACGGGCAGCATTCCACTCTGCTCGCCTTTCTCAGAGCACAAGGGTCCTGCCTCTCCTATGTCAGACCAGAATTTCTTCTTGAACCAGATGAGTTTAAGCATTGGAGTGAACTACAGGCTCAGTTAGCAGAACTGCCGGAGAATAAAGAGAGTGGCTGGGAGAGGTCCCAGGCTGCCAATCTGGCTGGACTAGACAACAATTCATTTGAGTCTCTTAGCAAACAAGCTTGGACAGATgtGCTGGTGCTTTCTCGTGTTTTGAAAAGCAACTCTGGTAGTCTTTATGACCTTGATAGTGTCGAACACATTCCAAGAATCAATCCTGATCCTTTATCCAGCAACATTTATTCAACATCTGAAAGAAGGCTTCTCACCTGGCTGAACTTTCACTATGAAAAAATGAGATCTGTAGTGTGGAGTCATTGTGTTAGGAAAGGTGATTTACCCTCTGCAAGATGGATAGTGAACTTTGACCTTGACCTTGTTGATGGTCTTGTCCTGGCTGCAGTGCTGGCTGCATATTGCCCATTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU87767 lncRNA upstream 24208 14197980 ~ 14199308 (+) False AMCG00014456
TU87766 lncRNA upstream 29083 14193779 ~ 14194433 (+) False AMCG00014456
TU87727 lncRNA upstream 52504 14167446 ~ 14171012 (+) True G70221
TU87518 lncRNA upstream 526645 13694815 ~ 13696871 (+) True G70054
TU87516 lncRNA upstream 539024 13683043 ~ 13684492 (+) False AMCG00014423
TU87784 lncRNA downstream 231292 14466704 ~ 14467744 (+) True G70271
TU87814 lncRNA downstream 944433 15179845 ~ 15180820 (+) True G70286
TU87887 lncRNA downstream 1004244 15239656 ~ 15242333 (+) False AMCG00014470
TU87927 lncRNA downstream 1115230 15350642 ~ 15430852 (+) True G70378
TU87973 lncRNA downstream 1215366 15450778 ~ 15451268 (+) True G70409
AMCG00014456 mRNA upstream 18502 14189564 ~ 14205014 (+) True AMCG00014456
AMCG00014447 mRNA upstream 60194 14162125 ~ 14163322 (+) True AMCG00014447
AMCG00014446 mRNA upstream 62674 14160636 ~ 14160842 (+) True AMCG00014446
AMCG00014445 mRNA upstream 65790 14151299 ~ 14157726 (+) True AMCG00014445
AMCG00014443 mRNA upstream 80443 14138406 ~ 14143073 (+) True AMCG00014443
AMCG00014460 mRNA downstream 2599 14238011 ~ 14241495 (+) True AMCG00014460
AMCG00014461 mRNA downstream 67035 14302447 ~ 14342021 (+) True AMCG00014461
AMCG00014459 mRNA downstream 135733 14371145 ~ 14380019 (+) True AMCG00014459
AMCG00014457 mRNA downstream 217114 14452526 ~ 14462108 (+) True AMCG00014457
AMCG00014462 mRNA downstream 449321 14684733 ~ 14692283 (+) True AMCG00014462
TU86705 other upstream 4214868 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 6806922 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 6874049 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 9571552 4649200 ~ 4651964 (+) True G68475
TU87778 other downstream 101446 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 1440219 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 1440219 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 1894113 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 2230269 16465681 ~ 16469113 (+) False AMCG00014525

Expression Profile