RNA id: TU87778



Basic Information


Item Value
RNA id TU87778
length 731
RNA type TUCP
GC content 0.48
exon number 6
gene id AMCG00014461
representative False

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 14302447 ~ 14356868 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGACTCGAGAGTTTATCCCCTTAGATAACCCCACAGATGAAACGCTGGAATTGGAAACTGTCAACCATAATCCAAGAAATTTCTATGTAGAGGTAGATCCTAAGAGACCTCTCCTTGTGGCGCCACACTCTTCAACCAGAGTCCTTGTCCAGTTCCGCCCCTCGGCTCTGGGGAAGGCCAACCACACAACCTGCATCACTTTTAAGTGCccacagCTAAATGAGTGGAAGTTCTACCTGTCTGGAGCAGGACTGTTCCCCGAGCCAATGGCACCGCTGAGTATGAGCACGCGTGTTGGCACCCATTCTTCAGTCATCGTGCCCTTCAGGAATCCGACTGATGACAGTGTGCTGGTGGATGTGCTCTTAACAGATCAGGAACAGACCATATGCCAGTTGAGCCATTTTGTGCCAAGACATCCCAGTGTCACTGAAGAGTCGGCCTTCCGGTTCAcactcaaacaaacacaagGTATCTTGTTGACCCCCAATGCAAAGTTGGACATTCCTCTGATGTTTACACCAGATTCCATGAAGTTATATAAGGCTTGGGTGGTAGTTTTCATGGTAAAGCGTGATGGTGGAAGCTGGAATGTTGACTTGGAAGATCACATTGCTACTGATCTAAGAAGTGTCTGTGCAGTTGCTGAAGACGGAAGTATTCAGAGAATTCACTGGGTGTATCCCATTCATGGCATTCCAGAGGCTGTCCCCTCAAAGACAACACCAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU87767 lncRNA upstream 137550 14197980 ~ 14199308 (+) False AMCG00014456
TU87766 lncRNA upstream 142425 14193779 ~ 14194433 (+) False AMCG00014456
TU87727 lncRNA upstream 165846 14167446 ~ 14171012 (+) True G70221
TU87518 lncRNA upstream 639987 13694815 ~ 13696871 (+) True G70054
TU87516 lncRNA upstream 652366 13683043 ~ 13684492 (+) False AMCG00014423
TU87784 lncRNA downstream 109836 14466704 ~ 14467744 (+) True G70271
TU87814 lncRNA downstream 822977 15179845 ~ 15180820 (+) True G70286
TU87887 lncRNA downstream 882788 15239656 ~ 15242333 (+) False AMCG00014470
TU87927 lncRNA downstream 993774 15350642 ~ 15430852 (+) True G70378
TU87973 lncRNA downstream 1093910 15450778 ~ 15451268 (+) True G70409
AMCG00014460 mRNA upstream 95363 14238011 ~ 14241495 (+) True AMCG00014460
AMCG00014458 mRNA upstream 101446 14223516 ~ 14235412 (+) True AMCG00014458
AMCG00014456 mRNA upstream 131844 14189564 ~ 14205014 (+) True AMCG00014456
AMCG00014447 mRNA upstream 173536 14162125 ~ 14163322 (+) True AMCG00014447
AMCG00014446 mRNA upstream 176016 14160636 ~ 14160842 (+) True AMCG00014446
AMCG00014459 mRNA downstream 14277 14371145 ~ 14380019 (+) True AMCG00014459
AMCG00014457 mRNA downstream 95658 14452526 ~ 14462108 (+) True AMCG00014457
AMCG00014462 mRNA downstream 327865 14684733 ~ 14692283 (+) True AMCG00014462
AMCG00014465 mRNA downstream 363026 14719894 ~ 14750619 (+) True AMCG00014465
AMCG00014463 mRNA downstream 410619 14767487 ~ 14811135 (+) True AMCG00014463
TU86705 other upstream 4328210 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 6920264 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 6987391 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 9684894 4649200 ~ 4651964 (+) True G68475
TU85567 other upstream 9684894 4649200 ~ 4651964 (+) False G68475
TU88057 other downstream 1318763 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 1318763 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 1772657 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 2108813 16465681 ~ 16469113 (+) False AMCG00014525
TU88601 other downstream 3046643 17403511 ~ 17448453 (+) False AMCG00014553

Expression Profile