RNA id: AMCG00014463


Basic Information

Item Value
RNA id AMCG00014463
length 3156
RNA type mRNA
GC content 0.53
exon number 21
gene id AMCG00014463
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 14767487 ~ 14811135 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTGGAGAGCCTCCCCCCTACTCGCTACAAGGAGACGGTCACCTCTCTTCTCCTGTGGATCCAGCAGGCCGAGAACAGGCTGGCCATTCCTCAGGCCACGGTCACTGAATACCCAGTCATGGAACAGAGGCTCAAGGAGAGCAAAGCTTTACAGGTGTCCCTGCAAGAGCAACAAAGTGGTCTGAACTACCTGACCTCGACTATGGAGGAGGTCTGCCGCAAAGCCCCGGTGGAGATCAGTCAGAAGTACCGGCTGGAGATCGAGGCCATACTGTTGCGCTGGAAGAAACTCTCTGCTCACCTGGGAGAGCAGGCGCAGAAACTGGAGGAGTTCATGACCAAACTGCAGCAGTTCCAAAAGTGGATGGCAGAAGTGGATGTCTTTCTGAACGAAGAGTGGCCGGCACTGGGTGACTCTGAAGCTCTGGAGAAACAGCTGGAGCAATGCACTGCCTTGGTGAACGACATCCACACCATCCAGCCCAGTCTGAATGGTATAAACGATGTGGGCCAGGCGCTGAAGGAAGAAGCGGAGCCGGCCTTCGCCAGCaaattgcaaaaagaaatgACTGACCTGAATGGGCAGTGGGACAACGTCTGTAAACAGGCGTATGCAAAGAAATCGGCCTTGAAGGGAGGTCTGGACAAGACGGTGAGCCTCCGTAAGGACCTCTCCGAGATGCAGGAGTGGATTACACAGGCGGAGGAAGACTTCCTAGAGAGGGACTTTGAGTACAAAACCCCAGAGGAGCTGAAGAGAGCAGTGGAAGAGCTGAAGAGGGCCAAAGAGGAGGTCCAGCAGAAGGAGGTGAAAGTGAAGCTTCTCACCGACTCGGTGAATGGTTTCATTGCCAAAGCACCACCAGCAGCCCATGAGGCCTTAAAAACCGAGCTAGAGGTCTTGACAACAAACTACCAGAGACTCTGCAGCAGACTGAAtgggaaatgcaaaacattggagGAGGTGTGGGCCTGTTGGTGCGAGCTGCTGTCTTATCTGGAGGCAGAGAACAAGTGGCTGGACGAGCTGGAGCTCAAGCTGAGGGCCACGGAAAACATCCAGGGCGGTGCGGAGGAGATCTCCGAGGCGCTGGACtcCCTGGAGATCAGCCTTCGTCACCCAGAAGACAACCGTAACCAGATCCGCGAGCTGGCCCAAACGCTGACAGACGGTGGGGTGCTGGATGAGTTAATTAACGAGAAGCTGGAGACGTTCAACACCCGTtgggaggagctgctgcagcaggctGTAAGGAGGCAGCAGACCCTCGAGCAGAGTATCCAGTCTGCCCAGGAAACTGACAAAGCTCTACGTTTGATTCAGGAATCTCTAACAACCATAGACCGCCACCTTTCTGCCTATATAGGTGACCACATCGATGCAGGCCAAATACCACAAGAAGCACAGAAAATCCAGTCTGATTTGAGCAGCCATGAAATCAGCCTTGATGagatgaggaagaggagcacGGGGAGGGATTCTGCGGAGCGTATCCTGTCTCAGATTGAAGTGACCCAGAAGAAATTGCAAGAGGTCTTGACAAAGTTCCGGTTGTTTCAGAAGCCAGCAAATTTCGATCAGAGGTTTTTGGAGTGTAAGATGATTCTGGATGACGTGAAGTCGCAGTTGCCAGTGTTGAAAATGAGAAGTGTGGAGCAGGATGTTGTGCAGTCACAGTTGGATCAGTGTATGAAATTTTACAAGAGCCTGAGTGAGGTTAAGTCGGAGGTGGAGACGGTGATTAAGACCGGGCGACAGATCGTTCAGAGACAGCAGACGGAGAACCCCAAGGAGCTGGACGAGAGACTCACGGCCCTCAAACTGCAGTACAACGAGCTGGGCGCCCAGGTGACAGAAGGAAAGCAGGAGCTGGAAAAGAGCTTGAAGTTGTCCAGGAAGCTGAGGAAAGAAGTCAATGCCCTCACAGAGTGGCTGGCAGCAACAGATGCAGAGTTGACCCGCAGATCGGCCGTGGAGGGCATGCCCACTAACCTGGATGCCGAGGTCGCCTGGGGGAAGGCCATTCAGTTGGAGACAGAGAAGCACCTTCAGCAGCTGAAGAATGTCTCAGACCTGGCGGAGGCTCTGAAGGCCGTGCTTCGGGGGAAGGAGAACCTGGTGGACGACAAAGTCAGCCTCCTCAACTGCAACTGGATTGCCGTGACCTCCAGGGCTGAGGAATGGCTCAACCTGCTGCTTGACTACCAGAAGCAAATGGAGATGTTCGACCAGAACATTGCCCAGATCACAGCCTGGATGTACCGTGCGGAGATTCTCCTGGACGAGTCTGAAAAACAGGAGTCCCGGGAGGAAGTGATCAAGGGTCTGAAGGATGAGCTGAGTGATATCCGACTGAAGGTAGATGCAGTGCAAGGACAGGCCGAAGACCTCATTAAAAACCGTGGAGATCACTGCCGAGTGGTGGTCGAGCCCAAGCTGTCAGAGCTGAATCAACGCTTTGAGGCCATCTCTCGCAAGATAAAGATCGGCAAGGCCTCCGTCTCTCCTCACGAAGTCCAGCACTATCACATGGAGGCTCAAAAATGGCTAGAGTGCCTGGAGGCCGAGCTCCAACAGGGCGACAATCTGAAGGAAGAAGATTTCCAGAAAGACATGGGAGATGGTGAAGAAGGCGCTGTGAAGGAGCTGTTGGAGAAAGGAGAGAACCTGCAAAAGCGAGTCCCAGAAGAAAGGAAACGAGAGGAGATCCGAATTAAACAAAACCTCTTACAAACCAAATACACCACTGTCAAGGATCTCAGGTTACTGAGGAAGAAGAAGGCCCTGGCAGTTTCTCCCCAGTGGTATCAATTTAAGAGGCAGTCAGACGACCTTTTGCAGTGGCTGGATGACATTGAGAAGCGAGTAGCTAACCTGCCCGACCCCAGAGATGACCAAAGGATTAAGGAGATTGATGCAGAGCTGGAGCAGAAGAGAGAAGACCTGAATGCTGTGAATAGACAGGCTCAAAGCTTGTCAAAGGATGGGGCTGCAAAGGCCGTGGAGCCCAGCCTGATCCAGCTCAACAAACGCTGGCAAGAAATAGAGAGCAAATTTGCTCAGTTCCGAAGACTGAACTTAACACAAATTGAAGAGCACAGCACCCTGCTGGAAGGTCACCAGTCTTCTTTTTCAGAAGAGACGGGGAAGCAAAGA

Function

GO:

id name namespace
GO:0001917 photoreceptor inner segment cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87784 lncRNA upstream 299743 14466704 ~ 14467744 (+) True G70271
TU87767 lncRNA upstream 568179 14197980 ~ 14199308 (+) False AMCG00014456
TU87766 lncRNA upstream 573054 14193779 ~ 14194433 (+) False AMCG00014456
TU87727 lncRNA upstream 596475 14167446 ~ 14171012 (+) True G70221
TU87518 lncRNA upstream 1070616 13694815 ~ 13696871 (+) True G70054
TU87814 lncRNA downstream 368710 15179845 ~ 15180820 (+) True G70286
TU87887 lncRNA downstream 428521 15239656 ~ 15242333 (+) False AMCG00014470
TU87927 lncRNA downstream 539507 15350642 ~ 15430852 (+) True G70378
TU87973 lncRNA downstream 639643 15450778 ~ 15451268 (+) True G70409
TU87977 lncRNA downstream 689423 15500558 ~ 15500832 (+) True G70413
AMCG00014465 mRNA upstream 16868 14719894 ~ 14750619 (+) True AMCG00014465
AMCG00014462 mRNA upstream 75204 14684733 ~ 14692283 (+) True AMCG00014462
AMCG00014457 mRNA upstream 305379 14452526 ~ 14462108 (+) True AMCG00014457
AMCG00014459 mRNA upstream 387468 14371145 ~ 14380019 (+) True AMCG00014459
AMCG00014461 mRNA upstream 425466 14302447 ~ 14342021 (+) True AMCG00014461
AMCG00014466 mRNA downstream 12657 14823792 ~ 14828121 (+) True AMCG00014466
AMCG00014467 mRNA downstream 109278 14920413 ~ 14989067 (+) True AMCG00014467
AMCG00014464 mRNA downstream 211864 15022999 ~ 15043455 (+) True AMCG00014464
AMCG00014469 mRNA downstream 278560 15089695 ~ 15137536 (+) True AMCG00014469
AMCG00014468 mRNA downstream 353077 15164212 ~ 15179155 (+) True AMCG00014468
TU87778 other upstream 410619 14336858 ~ 14356868 (+) False AMCG00014461
TU86705 other upstream 4758839 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 7350893 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 7418020 7346195 ~ 7349467 (+) True G68830
TU85567 other upstream 10115523 4649200 ~ 4651964 (+) False G68475
TU88057 other downstream 864496 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 864496 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 1318390 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 1654546 16465681 ~ 16469113 (+) False AMCG00014525
TU88601 other downstream 2592376 17403511 ~ 17448453 (+) False AMCG00014553

Expression Profile