RNA id: AMCG00014465


Basic Information

Item Value
RNA id AMCG00014465
length 1694
RNA type mRNA
GC content 0.52
exon number 12
gene id AMCG00014465
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 14719894 ~ 14750619 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

acATTGCAACTACACACCCAGACAAGAAATCCATCATCATGTACGTCACATCGCTCTTCCAAGTCCTGCCCCAGCAAGTCACCATTGAAGCCATCCAAGAAGTTGAGACACTGCCCCGGAATGCAAAGGTCACTCAGGAGGAACATGTTCAAATCCAGCATCAGCAACGTTATTCCCAACAGATCACAGTCAGTGTTGCACAGGGCCGCGTGCgcagcccctctccctctcctaaACCTCGCTACAAAAGCTATGCCTACACACAAGCTGCTTATGTCATGTCACCTGACCAAAAGAGGAAGCGGTATACTGCCCAGACGCCAGAAGCCCAGGAAGACAAGCCCGCTGGCAGCCCACTCATGGACACTGAACCTCACCTGGACAGCTACCAGAGCTCGCTGGAGGAGGTCCTGACTTGGCTGCTGTCTGCTGAGGATGGGCTGCAGTCCCAGGCTGATATCTCCAGCGACGTGGAGGAGGTCAAGGAGCAGTTTCACACCCATGAGGGCTTCATGATGGAGTTAACGTCTCACCAAGGCAGCGTGGGGAAGGTACTGCAGGCCGGGAGTCAGCTGCTGTCCGAGGGGAAGCTGACGGAGGACGAGGAGAGCGAGATCCGAGAACAGATGAACCTCCTCAACTCGCGATGGGAGCATCTCAGGGTCGCCAGCATGGAGAGGCAGAGCAAGCTACACGAAGTTTTAATGGATCTGCAGCATCAGCAGTTGAAGCAGCTCAGCGATTGGCTggcacagacagaggccagaATCAATAGGATGGAGACTCAGGCCCTTGGGCCAGATCTGGAAGATGTCAAACACCAAGTAGAAGAACACAAAttgCTGCAAGAAGATCTGGAAACGGAGCAGGTCAGAGTGAACTCCCTGACCCACATGGTTGTGGTAGTGGATGAAAGCAGTGGAGACGGCCCCACTGTAGCCCTGGAAGAAAAATTGCAGCACCTGGGAGAAAGATGGGCGACCATTTGCAAATGGACGGAAGAGCGATGGATTCTTCTCCAGGAGATTCTGCTCAAATGGCAGCACTTCACCGAGGAGCAGTGCCTATTTGACGCCTGGCTGATAGAGAAACAAGATGCCATCCACAAGATCCAGACCAGTGGATTTAAAGAGCAGAATGAGATGGTCGCCCACCTGAGGAAATTAGCGATCCTGAAGGGAGAGCTGGAGATGAAGAGACAGACGATGGATAGGTTGTGCTCACTTAGCCAGGATCTCCTATCAGCTGTGAGAAACAAGGAAGTTGCAAATAAGCTGGAGGCGCGTCTGGAGAATTTTGCTCAGCGCTGGGACAGCCTGGTACAGAGCCTGGAGAGGAGCTCCACACAGATATTGCCTCTACACACTTCAGATATTGATGAGGAAGCCATCACACAAATCTCGCAGGCTGTCACCACTGCTCAGACGGCACTAACGCAGAGCACGGTTACGGAGACTGTAACTATGGTGACCACACGAGAGCAGATCCTTGTCAAGCATGCTAAAGAGGATATCCCTCCGCCCCCGCCCCAAAAGAAGAGACAGATTGTGGTGGACTCTGAACTTAGGAAAAGgttTGGCGTTGATACAACTGAACTGCACAGCTGGATGACAAGATCAGAAGCTGTCCTTCAGAGTCCCGAGTTTTCAGTTTCACGAAAAGAGGGAAATCTCTCTGATATCCAGGAGAGAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87784 lncRNA upstream 252150 14466704 ~ 14467744 (+) True G70271
TU87767 lncRNA upstream 520586 14197980 ~ 14199308 (+) False AMCG00014456
TU87766 lncRNA upstream 525461 14193779 ~ 14194433 (+) False AMCG00014456
TU87727 lncRNA upstream 548882 14167446 ~ 14171012 (+) True G70221
TU87518 lncRNA upstream 1023023 13694815 ~ 13696871 (+) True G70054
TU87814 lncRNA downstream 429226 15179845 ~ 15180820 (+) True G70286
TU87887 lncRNA downstream 489037 15239656 ~ 15242333 (+) False AMCG00014470
TU87927 lncRNA downstream 600023 15350642 ~ 15430852 (+) True G70378
TU87973 lncRNA downstream 700159 15450778 ~ 15451268 (+) True G70409
TU87977 lncRNA downstream 749939 15500558 ~ 15500832 (+) True G70413
AMCG00014462 mRNA upstream 27611 14684733 ~ 14692283 (+) True AMCG00014462
AMCG00014457 mRNA upstream 257786 14452526 ~ 14462108 (+) True AMCG00014457
AMCG00014459 mRNA upstream 339875 14371145 ~ 14380019 (+) True AMCG00014459
AMCG00014461 mRNA upstream 377873 14302447 ~ 14342021 (+) True AMCG00014461
AMCG00014460 mRNA upstream 478399 14238011 ~ 14241495 (+) True AMCG00014460
AMCG00014463 mRNA downstream 16868 14767487 ~ 14811135 (+) True AMCG00014463
AMCG00014466 mRNA downstream 73173 14823792 ~ 14828121 (+) True AMCG00014466
AMCG00014467 mRNA downstream 169794 14920413 ~ 14989067 (+) True AMCG00014467
AMCG00014464 mRNA downstream 272380 15022999 ~ 15043455 (+) True AMCG00014464
AMCG00014469 mRNA downstream 339076 15089695 ~ 15137536 (+) True AMCG00014469
TU87778 other upstream 363026 14336858 ~ 14356868 (+) False AMCG00014461
TU86705 other upstream 4711246 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 7303300 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 7370427 7346195 ~ 7349467 (+) True G68830
TU85567 other upstream 10067930 4649200 ~ 4651964 (+) False G68475
TU88057 other downstream 925012 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 925012 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 1378906 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 1715062 16465681 ~ 16469113 (+) False AMCG00014525
TU88601 other downstream 2652892 17403511 ~ 17448453 (+) False AMCG00014553

Expression Profile