RNA id: AMCG00014467


Basic Information

Item Value
RNA id AMCG00014467
length 1605
RNA type mRNA
GC content 0.50
exon number 11
gene id AMCG00014467
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 14920413 ~ 14989067 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGATGTGgagatttattgattgattttggaCTGGAAGAGGAAGTGagaatgGAGCTGCACAATGGCATCACAAACCAGCAGGCACTGGTCACAGCCCTGAATGTCAGTGGAGAGGAGATCGCCCAGCAGTCAACTGCGGAGGACGCCATTCTCTTCAAGGAGAAACTGACCGGGGTCAACGCACGCTGGGAGGAGGTCTGTCGGCAGgtggcagagaggaggaggagGTCAGAAGAAGAGAAACACATATCAGAACTGCAAGAAGACCTGAATGAGTTCCTCTCTTGGCTTGAAGAAGCGGAGAGCATTATATCAATTGAGCTGGAGCCCGGAGACACGCAGCAGCTGAACGCTTCCTTAGAGAAAGTTAagTTAAGAGTGGATGAGCTGTCTCCTAGAAAGAGGATATTAAAGGAGCTGAATGACAGTTCAAGGTATCCACATGGTAGCACGGCGCTTACCTCAGAAGAGCACAGGAGACTAGAGACCAGCCTTAAACAAGTCAACGGGCGCTGGACAACGGTGTCCAGAGAGCTGCCTGAGAAGCAGAGAAAAATTGAAGACCTGCTGAAGAGCTTTGCCCAATTCCAGCAGCAGCTCAGCCAGCTGGCCCTCTGGGCTTCCACTACAAAAGACCAACTCGAACTCTACAGACAAGTGGGGATTCCAGGGGCATTTGACACAAAGGAAACAGAAGACGCTGCTCAAGCCAAACAAGCAGATGTGGAAGGAATCCTATCGCGGGGTCATCAGCTGTACAAGGACAAACCAATCACTCAGCCAATAAAGGGAAAGCTTGAAGACCTCAGTTCAGATTGGAAAGCAATCCACATCCTACTCACTCAGCTGAGAGGCAAACCGGACACTGTCATCTCTACTGCTGCTGGTCAAACAGTTACCGTAGTGACAAAAACCCTGGTTACCAAGGAAACCCACATCTCTAAGCTGGAAATGCCATCTTCTCTGCTCATGGAGGTACCAGCCCTGGCTGACTTCAATAAGGCCTGGGTTGAGCTCACCGATTGGCTGTCTCTACTGGATCATATGATCAGAACCCAGATAGTGACGGTGGGAGACCTTGAAGAAATCAATGACATGATTGACAAACAGAAGGCAACATTGCAGGACCTTGACCAGAAACGCCCTCAGCTGGAGAATCTTATTACTGCGGCACAGAACTTGAAAAACAAGTCCAACAATCAAGAGGCACGCGCCATCATCACCGACCGCATTGATAAGATCCAGGTGCAGTGGGATGAGGTGCAGGGACGGCTTCAGGACAGGAGACGACAGCTGCAGGACATGCTGAAGGACTCCAGTCAGTGGCTAGAGGCCAAACATGAAGCCGAGCCCCTGCTGCACAGAGCCACGGCCAAACTGGAGTCATGGAAGGAGATATCCTACACTGTGGAGGCGCTCAAGAAACAGAATACAGATCTGAAGCAATTTGTCAAGGAGCTGCGCCAGTGGCAGATCAACATAGATGTAGCAAATGACCTTGCACGCAAGCTTCTGAGGGATTACTCTGCTGACGACACCAAGAAAGTCAATCTGATGACAGAGAGCATGAACAATTCCTGGGCAAATATCAATAAGAAGTAA

Function

GO:

id name namespace
GO:0006091 generation of precursor metabolites and energy biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87784 lncRNA upstream 452669 14466704 ~ 14467744 (+) True G70271
TU87767 lncRNA upstream 721105 14197980 ~ 14199308 (+) False AMCG00014456
TU87766 lncRNA upstream 725980 14193779 ~ 14194433 (+) False AMCG00014456
TU87727 lncRNA upstream 749401 14167446 ~ 14171012 (+) True G70221
TU87518 lncRNA upstream 1223542 13694815 ~ 13696871 (+) True G70054
TU87814 lncRNA downstream 190778 15179845 ~ 15180820 (+) True G70286
TU87887 lncRNA downstream 250589 15239656 ~ 15242333 (+) False AMCG00014470
TU87927 lncRNA downstream 361575 15350642 ~ 15430852 (+) True G70378
TU87973 lncRNA downstream 461711 15450778 ~ 15451268 (+) True G70409
TU87977 lncRNA downstream 511491 15500558 ~ 15500832 (+) True G70413
AMCG00014466 mRNA upstream 92292 14823792 ~ 14828121 (+) True AMCG00014466
AMCG00014463 mRNA upstream 109278 14767487 ~ 14811135 (+) True AMCG00014463
AMCG00014465 mRNA upstream 169794 14719894 ~ 14750619 (+) True AMCG00014465
AMCG00014462 mRNA upstream 228130 14684733 ~ 14692283 (+) True AMCG00014462
AMCG00014457 mRNA upstream 458305 14452526 ~ 14462108 (+) True AMCG00014457
AMCG00014464 mRNA downstream 33932 15022999 ~ 15043455 (+) True AMCG00014464
AMCG00014469 mRNA downstream 100628 15089695 ~ 15137536 (+) True AMCG00014469
AMCG00014468 mRNA downstream 175145 15164212 ~ 15179155 (+) True AMCG00014468
AMCG00014470 mRNA downstream 232847 15221914 ~ 15242306 (+) True AMCG00014470
AMCG00014471 mRNA downstream 258704 15247771 ~ 15253971 (+) True AMCG00014471
TU87778 other upstream 563545 14336858 ~ 14356868 (+) False AMCG00014461
TU86705 other upstream 4911765 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 7503819 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 7570946 7346195 ~ 7349467 (+) True G68830
TU85567 other upstream 10268449 4649200 ~ 4651964 (+) False G68475
TU88057 other downstream 686564 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 686564 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 1140458 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 1476614 16465681 ~ 16469113 (+) False AMCG00014525
TU88601 other downstream 2414444 17403511 ~ 17448453 (+) False AMCG00014553

Expression Profile