RNA id: AMCG00014469


Basic Information

Item Value
RNA id AMCG00014469
length 1848
RNA type mRNA
GC content 0.55
exon number 15
gene id AMCG00014469
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 15089695 ~ 15137536 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACCAGACGCAGACAACCTGCTGGGATCATCCCAAGATGACAGAGCTCTACCAGTCCTTAGCTGACCTGAACAATGTCAGGTTCTCTGCCTACAGGACGGCCATGAAGCTGCGGAGACTGCAGAAGGCCCTTTGCTTGGATCTCCTGGGCCTGTCGGCAGCGTGCGATGCCTTTGACCAGCACAACCTCAAGCAGAACGAGCAGCTCATGGACATCCTGCAGATCATCAACTGTCTGACCGCCATCTATGACCGCCTGGAGCAGGAGCACAACGCCCTGGTCAACGTGCCTCTCTGCGTGGACATGTGCCTCAACTGGCTCCTCAACGTCTATGACACGGGCAGGACAGGGAAGATCCGAGCTCTGTCCTTCAAAACCGGCATTGTTTCACTCTGTAAAGCACATTTGGAGGACAAGTACAGATATTTGTTCAAGCAGGTGGCCAGCCCTACGGGTTTCTGTGACCAGCGAAGACTGGGGCTCCTCCTGCATGACTCCATCCAGATTCCCCGGCAGCTGGGCGAGGTGGCCTCATTTGGCGGCAGCAACATTGAGCCCAGCGTGCGGAGTTGTTTTCAATTCGCCAACAACAAGCCAGAGCTAGAGGCAGCTGTGTTCCTGGACTGGATGCGCCTGGAGCCCCAGTCCATGGTATGGTTGCCTGTTCTGCATAGAGTGGCAGCTGCGGAGACTGCCAAACACCAGGCCAAGTGTAACATTTGCAAGGAGTGTCCTATTATTGGATTCAGGTACCGAAGCCTAAAGCACTTTAACTATGATATCTGCCAAAGCTGTTTCTTCTCTGGACGTGTTGCAAAAGGTCATAAAATGCAGTACCCAATGGTGGAGTACTGCACACCGACCACTTCAGGAGAGGATGTACGTGATTTTGCCAAGGTGTTGAAAAACAAGTTCAGAACAAAGAGATATTTTGCAAAGCACCCCCGAATGGGATACTTGCCCGTCCAGACAGTGTTGGAAGGAGACAACATGGAAACACCTGCATCCTCCCCTCAGCTGTCACATGATGATACACATTCAAGAATTGAGCATTACGCTAGCAGGCTAGCAGAAATGGAGAACCGGAATGGATCTTATCTCAATGACAGCATCTCGCCGAACGAAAGCATCGATGACGAACACTTGCTTATCCAGCATTACTGCCAAAGCTTGAACCAAGAGTCTCCGCTAAGCCAGCCCCGCAGCCCCGCACAGATCCTGATCTCCCTGGAGAACGAGGAGAgaggggagctggagagggtCCTCAATGACCTAGAGAAGGAGAACAGgaaTCTGCAGGCAGAGTATGACCGACTGAAGCAGGCCCATGACCACAAGGGGCTGTCCCCACTGCCCTCGCCCCCCGAGATGCTGCCCGTGTCCCCTCAGAGCCCCCGAGACGCTGAGCTCATCGCCGAGGCCAAGCTCCTGCGCCAGCACAAGGGCCGTCTGGAGGCCAGGATGCAGATTCTGGAGGATCACAACAAGCAGCTGGAGTCGCAGCTCCACAGACTGAGACAGCTGCTGGAACAGCCCCAGGCCGAGGCCAAGGTCAATGGCACCACCCTGTCGTCTCCGTCTACCTCCTCACAGCGCTCCGACAGCAGCCAGCCCATGCTGCTCCGCGTCGTGGGCAGTCAGACCACAGAAACTATGGGAGACAATGATCTTCTGAGTCCAACACAGGATGCAAGCACAGGCCTGGAGGAAGTGATGGAGCAGCTCAACAACTCGTTCCCTAGCACCCAAGGTCACAATGTAGGAAGCCTCTTCCACATGGCGGATGACTTGGGCAAAGCAATGGAGTCGTTGGTGACTGTGATGACAGATGACGAGGCTCTGGActag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87784 lncRNA upstream 621951 14466704 ~ 14467744 (+) True G70271
TU87767 lncRNA upstream 890387 14197980 ~ 14199308 (+) False AMCG00014456
TU87766 lncRNA upstream 895262 14193779 ~ 14194433 (+) False AMCG00014456
TU87727 lncRNA upstream 918683 14167446 ~ 14171012 (+) True G70221
TU87518 lncRNA upstream 1392824 13694815 ~ 13696871 (+) True G70054
TU87814 lncRNA downstream 42309 15179845 ~ 15180820 (+) True G70286
TU87887 lncRNA downstream 102120 15239656 ~ 15242333 (+) False AMCG00014470
TU87927 lncRNA downstream 213106 15350642 ~ 15430852 (+) True G70378
TU87973 lncRNA downstream 313242 15450778 ~ 15451268 (+) True G70409
TU87977 lncRNA downstream 363022 15500558 ~ 15500832 (+) True G70413
AMCG00014464 mRNA upstream 46240 15022999 ~ 15043455 (+) True AMCG00014464
AMCG00014467 mRNA upstream 100628 14920413 ~ 14989067 (+) True AMCG00014467
AMCG00014466 mRNA upstream 261574 14823792 ~ 14828121 (+) True AMCG00014466
AMCG00014463 mRNA upstream 278560 14767487 ~ 14811135 (+) True AMCG00014463
AMCG00014465 mRNA upstream 339076 14719894 ~ 14750619 (+) True AMCG00014465
AMCG00014468 mRNA downstream 26676 15164212 ~ 15179155 (+) True AMCG00014468
AMCG00014470 mRNA downstream 84378 15221914 ~ 15242306 (+) True AMCG00014470
AMCG00014471 mRNA downstream 110235 15247771 ~ 15253971 (+) True AMCG00014471
AMCG00014472 mRNA downstream 136025 15273561 ~ 15287276 (+) True AMCG00014472
AMCG00014476 mRNA downstream 195393 15332929 ~ 15336221 (+) True AMCG00014476
TU87778 other upstream 732827 14336858 ~ 14356868 (+) False AMCG00014461
TU86705 other upstream 5081047 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 7673101 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 7740228 7346195 ~ 7349467 (+) True G68830
TU85567 other upstream 10437731 4649200 ~ 4651964 (+) False G68475
TU88057 other downstream 538095 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 538095 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 991989 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 1328145 16465681 ~ 16469113 (+) False AMCG00014525
TU88601 other downstream 2265975 17403511 ~ 17448453 (+) False AMCG00014553

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00001681 False 2163 mRNA 0.51 17 NC_007112.7 10824653 ~ 10885339 (-)
grasscarp (Ctenopharyngodon idella) CI01000300_01844908_01942907.mRNA True 10966 mRNA 0.49 70 CI01000300 1844298 ~ 1942907 (-)