RNA id: AMCG00014480


Basic Information

Item Value
RNA id AMCG00014480
length 2854
RNA type mRNA
GC content 0.44
exon number 9
gene id AMCG00014480
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 15365696 ~ 15371378 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAACACGGTTCTATCATGGCGGTTTCCGACAAATCCACTAAAGAACGATTACTGTCTGTTTTAGACGATTTGGAAGTATTATCTAGGGAGCTGATCGAGATGCTGGCATTGTCGAGGTGCCAGAAACTGCCCCAGTCTGGGGAAGAGACACAGATTTTGGAGCTGCTGGTGCAGAGGGACAGTGAGTTTCAAGAGCTGATGAAAGTGGCCCAGGAACAGGGCAAAGTGCATGAGGAGATGCAGCTCTTGGAGAAGGAAGTGGAGAAGAGAGACAGTGACATCCAGCAGCTGCAGAAACAGCTGAAGGAGGCAGAGCACACACTGGCAACTGCTGTGTAccaagcaaaagaaaaactgaaatccaTAGAAAAAGCGAGAAAAGGGAGCATCTCTTCtgaagaaattataaaatatgctCACAGGATCAGCGCCAGCAACGCCGTGTGTGCTCCTCTAAACTGGGTACCAGGTGATCCCCGGAGACCCTACCCCACGGATCTGGAGATGAGGAGTGGGATGCTGGGACAGATGAGCAACCTGCCTACCAATGGTGTAAATGGACACCTCCCAGGGGATGCACTGGCAGCTGGAAGACTGCCTGATGTGCTGACGCCGCAGTACCCCTGGCAGTCCAGCGACATGTCTGTTGGCatgctgcccccccaccacagcAATGAGTTAATGCTGGAGCCACCTGGGCATAACAAGGAGAACGAGGATGATGTGGAGGTGATGTCGACTGactcctccagcagcagcagtgattcGGACTAGAGGACGAGACGAGGACTGTTtacgacactctctctctctctctctcacacacacagcaggctgTGTGAAAACCACCACTCTCTCGCAGGCTCAAGAGTGGGAGCTACATGTatgtgaaaatacacacactattGGTTGTAATCTGGACTGTGTCCTATCTACAGATTAAATGACTGGGACAGGATTATAAAGCAGAACAGTTTCATGTTGTAAAACTCAAGAACATGTTTTGCTCAACAATGCACCTGAAAGAGCTGTTCCACAGTACAGATGCACAACATTGTAGACAACTGGCCAGACCATTAGTAGTAATTGTTAATGTTTCACAACTCTGTTACTCGGATGTGAATGAAAATCTGCAGAACACATTGTACTTTCTCTTCAGTAAATCAGTGGGAGACCATCATGTTCCCTCTGGCTGTATTAAGGTTTCACAATATACTCAGGTGAGGAAGGCAGGGAATAGGAGTATGGCAAGGAAACACCTCCTATTTTAAAAGTAGCTACATTGGTATAAAACCCATTGTAAGCTTTTTTTGATTGTGCTGCTGTCAAATGTTTTTATggcatgtttgtatttctttcctaATAACAACAACTTAAGTTAATGTTGATAAGAAAACTAGGATCAAAGGAATAAAGAACCCACTTGAAAACCATGAATATTAGAGATAAACACAAGGATGCCCTgttttatttggatttatttaaacCAAAGAACATTCACAGTGTGTTGTAAGTTTTgcataagattttttttttttttaaacaaggcaTTGTAACTGCAGAATTGTAAATAGTACTGTAcataatttcaaatgttttcctattttgtaaataaaagacaaatccTGAGTTAACTGTATGACACTAGTGGTGTAAAAACAAAGGGTAAAACCTTTTCTCAATGAACCAACACTTTGCTAAAAGTATAGACATCCAATTGAAAATTATGCATCTTCCCATGATTCGAATAAGAATCTTTTTAATCTGTACACAATTTCCTTTACTTCTGAAATCACTTAATGGAAACCACTTTTCCCCAGAACCTTCATGCTATACAAACAGTCGCAGTTGAGTGATTCTTGTGTCCATCTTCAGCTGAATATGGGTAAATGTTTCACTTGTGCTTTCATATGCAGGGTTATGCCTGGAGGCATAAACCAAACACCAGTGGGCATTAGcatctgtatttgaaaaatcaactcttataaatacaaatgtttgtgtCCTAGCCATCAGATGTACATAtacaaaacagaatgaaaaagtgtttttatgcaCCAAGTCTCCTTTCTTCTAATTACACGTGTGTACCAATCAGCAGTGCACTATTCCTGCCGCCTATAAAATCACTTGAACTACTGGTCAGTTATGGGTTTCGACTCTTTGATGCGGTCTGCTGTGGAGAGTGTGCACGGTCTCTGAAAGGGTGGTAGCCCTGTTGTCGCAGGCAGGCCAGAGGCAGGAACAGCTGACTATCTGATGGAAAATCTTCCCACCTAGTCCAGGTCCACCCTGCaTTTTCTCGGGTTCTAAATTGACAGCTTCTGAAGGGTGGCTCCGGTCCACCTCTCCTTGCATTATGATGGTGACATAGTGGTAGTTTTCCTCCAGCCTGATCGAGTTCACCACTGATGCAAAGTGAACATTCATCAGGTGAAGCCCTGCTTCCTCCAGCACTTCTCTGGCAGCGCATTCTTCCCATGTTtccctaaaTTCCAGATGACCCCCGGGTAACTGATAAGTACCTTTACCAACGAGGCTTTTCCTCCTTCCCAAAAGGACACAACCTGAATTCTCGCTGTCTGTGACCAGGACGCCCACTCCTACCCCCGGCCGCTTGCAAAGACCATTCCCAGCATCTGTCATTTTAACTCATCTCATATCACACTCGATTAGCAgtaactaaaataacattgtgtaGACTAAGACTAGGGTTAATCTGGGTCTGTAAAACCAGTAAAGCATCACACATCAATACCGGTTTTAAAGCTATTCGAGAATAGGATTTATGTTCAGATGACCCAGGTTTGAGAGGATCGGGAAGCAGTAGAGTTATTGCGGACTGCGCAGTCGC

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0016592 mediator complex cellular_component

KEGG:

id description
K15146 MED4; mediator of RNA polymerase II transcription subunit 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87887 lncRNA upstream 123363 15239656 ~ 15242333 (+) False AMCG00014470
TU87814 lncRNA upstream 184876 15179845 ~ 15180820 (+) True G70286
TU87784 lncRNA upstream 897952 14466704 ~ 14467744 (+) True G70271
TU87767 lncRNA upstream 1166388 14197980 ~ 14199308 (+) False AMCG00014456
TU87766 lncRNA upstream 1171263 14193779 ~ 14194433 (+) False AMCG00014456
TU87973 lncRNA downstream 79400 15450778 ~ 15451268 (+) True G70409
TU87977 lncRNA downstream 129180 15500558 ~ 15500832 (+) True G70413
TU87979 lncRNA downstream 134436 15505814 ~ 15506048 (+) True G70415
TU87982 lncRNA downstream 151147 15522525 ~ 15525015 (+) True G70418
TU88084 lncRNA downstream 356056 15727434 ~ 15728917 (+) True G70496
AMCG00014476 mRNA upstream 29475 15332929 ~ 15336221 (+) True AMCG00014476
AMCG00014472 mRNA upstream 78420 15273561 ~ 15287276 (+) True AMCG00014472
AMCG00014471 mRNA upstream 111725 15247771 ~ 15253971 (+) True AMCG00014471
AMCG00014470 mRNA upstream 123390 15221914 ~ 15242306 (+) True AMCG00014470
AMCG00014468 mRNA upstream 186541 15164212 ~ 15179155 (+) True AMCG00014468
AMCG00014486 mRNA downstream 108074 15479452 ~ 15485053 (+) True AMCG00014486
AMCG00014481 mRNA downstream 123847 15495225 ~ 15499833 (+) True AMCG00014481
AMCG00014482 mRNA downstream 146493 15517871 ~ 15522481 (+) True AMCG00014482
AMCG00014488 mRNA downstream 228781 15600159 ~ 15617165 (+) True AMCG00014488
AMCG00014489 mRNA downstream 258812 15630190 ~ 15654845 (+) True AMCG00014489
TU87778 other upstream 1008828 14336858 ~ 14356868 (+) False AMCG00014461
TU86705 other upstream 5357048 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 7949102 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 8016229 7346195 ~ 7349467 (+) True G68830
TU85567 other upstream 10713732 4649200 ~ 4651964 (+) False G68475
TU88057 other downstream 304253 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 304253 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 758147 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 1094303 16465681 ~ 16469113 (+) False AMCG00014525
TU88601 other downstream 2032133 17403511 ~ 17448453 (+) False AMCG00014553

Expression Profile