RNA id: AMCG00014488


Basic Information

Item Value
RNA id AMCG00014488
length 3281
RNA type mRNA
GC content 0.50
exon number 17
gene id AMCG00014488
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 15600159 ~ 15617165 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgtttggtgtttttttcagttctgcAGCCTGGTACACACCCACAGACAAGCATGTCTTCCCAGGCATACTTACAGTGGCCTTATTACATTCACCAGGAGATGGGTTTAATATCCACAACATATCCATGGGAACCCATGTGAGAACTGTCAAAGTGACTAACCCTTCAGAGTTCCTAGAGTTCATTCAACAGACTGAAAGAGACAAGTCTGCCAAATTCCCAGGGACACTTTCTGAAAATACGGCAGGTCATACTAAGCACACGGCCAGACCAGATGCTGGAAATGGATGCGATGTTGGGAGTGGGCCGAAGAGGCCTGTGGAGCCCTCTCACTACTCATTGGATGCTCCAGGGCTTAAAGTTGCCCTGGACACTGTGAACAAAAAGGCAACAGAAGTTATTGACCTCACAGAGCTGGCTTCCAGATCAGCAGCCTTCCCCACACCAGATTATTTCACCCTCCCTGAAGACTTCCAGATGAATTCTTCAATATCCACTGCATTTCAGACCTCACAGATGGAATGGGGGAGGCCTGTGGAGCCCTCTCACTCCTCTCGGGATGCTCCAGGGCTTAAAGCTGCCCCAGGGCTTAAAGCTGCCCCGGACACTGTGAAGGAAAAGGCAGCAGAGGAAGTTTTCTACCTCACAGGGTTTGGAGAAACTCACAGCTCACCAACAGAGGCTGCTGAGGAGCCCAGTGCTCCTGCAGAGTGCGACCGTGGCAGTGCTGTGCTCTCGCGGCCTGACTGCGTGACGGGACCTCCTGACACTGTCTATAAGAAGCCCTTTCCTCCAACTCAGATGCCACTCACCTCTATGCTAGCAGGGGAATTCTCCAAACCAGCTGTAATTGGACACTATAGGAGACTATCAGCCACCCCAGAAACTGTGAAGGAAATCCTCATATCGGTCCTTGAGAGCTCGGGGGGGCTGAAGTACAAGCCACTTCCACAGATGTCCCCACCCCGCACCATGCACAGCAGGACCAGCTGTGCACGGGACTGGACTCGCAGCAGCGATGATGACCTCTCTGAAGGCAGTTGGAGTGAAAGTGATGATGGCTACAGTGAGAAAGAGAATGCAGCACTTAAGAAAGAAACCACAACACAGCAGACTTCTTCCCAGTTGGATCCAGATGAAGACTGCTATTATCTCCCAAGGAGCAGCCCAGTCATTTCTCGCAAAAAAAGGTTTGCAGGGCCTAGGCCCATCTCATCACCTGGAGAAAGGTCTGTCTCTCCATCAAAACAGCTGTCAGCTTCTCCACACAGATCCCCCTCTCCGGCATCAGTGGACTCATTTCTGAAGGACAGAAAGACTTGCAACCCCCCCCTTCAGGAAGCCTCTTGCGAGCCTGATAAACCCAGGAGCACCTCACTCTCGGCCAACCTCAACAGGCTTTTCCCCATCGGGATCcagttcccctttaagactTCAGCATTCGTAGAAGGAGCGAGGCGTTCCCCTGAGGAGGGCTCCAAGCCTCGCTCTCACACCGACTCCTTCATCCACCTTGCATCTTGGAAGGATGCTGCTGATGTGAGCAAAGAACCTCTCAATTTTGCCAGCTCCCCTGATGACATTCTAAAGGCAAGCAGTGATCTTGACAAGGAGAACGCCCACTTCATCATTGTGGACATGGTGCTGTCTGCGCTGGAGAGCGTGAAGTGGGCAGTGCAGAGTCACAGGGCTGGGGAGGCTGCAGGAGGGCAGCCAGGCTCTCTCTCGGGGCTGCAGGATGAGGAGCACAACAGCAGCGGTTCCCTCTCCAAGAAGCACTCGGAGTCTGTGGCTTCCTCGGACAGTGGCTATGAAGGGTATCCTGCAACACAGTCCGAAGCCTTTctttactctcctgtctctgtcccccACGTTCAAAAGGAGCCAGAGGATAATGCACCGTACCCAAATTTAAGTAAGTTCGAGAGAAACACACTCGCCCCAGACCTTGGCACAAGTTCTTCCTTGAGGAGTCCCTCCATAGCCCCCACAAGCCCCTTCACAGCAGAAGTGCTAGCTCAGCAGCTGGTGACCGTGTTCCGGAAGCAATGGTTACACTTGGAGAGGCAGCCGCGCAGCTCCTCCAGCCCGGGCCCAGCACTGCAGGAATTTTTCCAGAGCGAAGCAGGCATGCCAGCGGAGTGCAGCGTCTCTCTGGCAGAGGAGATTAAACTGAGGTCCCGAATGCGTGGCACCTTGATCTGGGCTCCTCCTCGCTTTCAGATCATCTTTAACATTCACCCTCCACAGAAGCGCAGTGTTGTTGTAGCATCTCAGCACTACCTCTGCGCCGGCTGTGGCACCGAAGTGGAACCGAAGTATATTAAGAAACTGCGCTACTGTGAATACCTGGGGAAGTACTTCTGTGACTGCTGCCACAGTGACTCGGAGTCTTCCATCCCCGGGCACATAGTGATGAAGTGGGACTTCAGCAAATACCCAGTCTGTAACTTTTCCAAACAGCTCCTGGACAGCATATGGCACAACCCACTCTTCAATGTGTCTTGTATTAATAAAGCACTGTACAGCAAAGCAAAGGAGCTGGACAGGTTCAGGGAACTTCAAGAACAATTGTTAAGCATTAAGAAACTGCTGGCAACTTGCAGATTATCAAAAagTGTCCTGCAGGAGATTGAGCAGCTTCCAGAGCACCTGACTCACGAACAGCATCTCTTCTCTTTGGAAGACCTGGTGAATATCAAGCGTGGCCTGCTACAGACCCAGGCCAGAGCGCTGCTGAAACTGGCGTCTGCTCATGTGGAGATCTGTGAGCTGTGCCTCGCCAAGGGGTTTATCTGTGAATTTTGCAAGAGCAAAGAAGTGCTCTTTCCCTTCCAGAGAGAAACTTGTAAACGCTGTGAAGaatgCAAAGCATGCTTCCACAAGTACTGTTTCAAAGAGGAAGACTGTCCTAAATGTATACGGATACAGACTCGGAGGAAACTGAAGGACTCTTTCTCTCTGGACGTTAAATAACCCACAATCCAACATGAAAGTCTTCAGGGATGTATGAAAGCTATCCAATTAGTAATGATGAGGAGCATCTTGTTTGTGTAGTAATGCTCCTCATTTTAAACGCATTATGACATCCAACcaggatttaaaaatatctagTTTTGCCTTTGTATTTTCTGGTTGAATTGCAATTaatttacaatgaaaatgtattccgAATACTGAGTATTCTGAAAGAATGTGGAATGCATTGTGCATCTAATTCTCTAGCAGTGTTATTGCtgctttatgttgttttaaactgtgtaaaatcTTATTAAAGGAAc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87982 lncRNA upstream 75144 15522525 ~ 15525015 (+) True G70418
TU87979 lncRNA upstream 94111 15505814 ~ 15506048 (+) True G70415
TU87977 lncRNA upstream 99327 15500558 ~ 15500832 (+) True G70413
TU87973 lncRNA upstream 148891 15450778 ~ 15451268 (+) True G70409
TU87927 lncRNA upstream 169307 15350642 ~ 15430852 (+) True G70378
TU88084 lncRNA downstream 110269 15727434 ~ 15728917 (+) True G70496
TU88167 lncRNA downstream 301248 15918413 ~ 15918621 (+) True G70562
TU88264 lncRNA downstream 619945 16237110 ~ 16240338 (+) True G70637
TU88391 lncRNA downstream 873246 16490411 ~ 16491118 (+) True G70735
TU88448 lncRNA downstream 1113713 16730878 ~ 16733637 (+) True G70776
AMCG00014482 mRNA upstream 77678 15517871 ~ 15522481 (+) True AMCG00014482
AMCG00014481 mRNA upstream 100326 15495225 ~ 15499833 (+) True AMCG00014481
AMCG00014486 mRNA upstream 115106 15479452 ~ 15485053 (+) True AMCG00014486
AMCG00014480 mRNA upstream 228781 15365696 ~ 15371378 (+) True AMCG00014480
AMCG00014476 mRNA upstream 263938 15332929 ~ 15336221 (+) True AMCG00014476
AMCG00014489 mRNA downstream 13025 15630190 ~ 15654845 (+) True AMCG00014489
AMCG00014487 mRNA downstream 39764 15656929 ~ 15671148 (+) True AMCG00014487
AMCG00014490 mRNA downstream 58618 15675783 ~ 15685899 (+) False AMCG00014490
AMCG00014496 mRNA downstream 82989 15700154 ~ 15703459 (+) True AMCG00014496
AMCG00014494 mRNA downstream 98635 15715800 ~ 15725440 (+) True AMCG00014494
TU87778 other upstream 1243291 14336858 ~ 14356868 (+) False AMCG00014461
TU86705 other upstream 5591511 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 8183565 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 8250692 7346195 ~ 7349467 (+) True G68830
TU85567 other upstream 10948195 4649200 ~ 4651964 (+) False G68475
TU88057 other downstream 58466 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 58466 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 512360 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 848516 16465681 ~ 16469113 (+) False AMCG00014525
TU88601 other downstream 1786346 17403511 ~ 17448453 (+) False AMCG00014553

Expression Profile