RNA id: AMCG00014500


Basic Information

Item Value
RNA id AMCG00014500
length 7313
RNA type mRNA
GC content 0.46
exon number 30
gene id AMCG00014500
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 15823276 ~ 15870879 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGCGACATGTCAAAACTGGTCAATTGGCAGCCATCAAGGTTATGGATGTCACGGAGGATGAAGAGGAAGAAATTAAACTAGAGATTAACATGCTAAAGAAGTACTCTCATCACCGAAACATTGCCACTTACTATGGAGCCTTCATAAAGAAAAGCCCTCCAGGGCATGATGACCAGCTGTGGCTTGTGATGGAGTTCTGTGGGGCCGGATCCATCACAGACCTGGTGAAAAACACCAAGGGCAACACTTTGAAGGAGGACTGGATTGCCTACATCTCCAGAGAGATACTGAGAGGACTGGCCCATCTTCATGCCCACCATGTGATTCATCGTGACATCAAAGGGCAGAATGTTTTGCTGACCGAAAACGCAGAAGTGAAGCTGGTGGACTTTGGAGTGAGTGCCCAGCTGGACAGGACGGTGGGCAGGAGGAACACCTTCATTGGGACTCCATACTGGATGGCTCCTGAAGTCATTGCCTGCGACGAAAATCCAGATGCCACCTACGACTACAGAAGTGACTTATGGTCTTGCGGGATCACAGCCATCGAGATGGCAGAGGGAGCTCCTCCACTTTGTGACATGCATCCGATGAGAGCACTTTTCCTTATTCCCAGAAACCCCCCACCAAGGCTGAAATCCAAGAAATGGTCCAAAAAGTTCTTCAGCTTTATTGAGGGCTGCCTTGTGAAGAACTACATGCAGCGCCCCCCCACGGAGCAGCTGCTCAAACACCCCTTCATCAGAGACCAGCCCAATGAGAGGCAGGTTCGCATCCAGCTCAAGGACCACATCGACCGCACCCGCAAGAAGAGGGGCGAGAAAGATGAGACAGAGTACGAGTACAGCGGcagtgaagaggaggaggaagagactCCCGAACAGGAAGGAGAACCAAGCTCCATCGTGAATGTGCCCGGCGAGTCCACGCTGCGCAGGGATTTCCTGCGCCTGCAGCAGGAGAACAAGGAGCGGTCGGAGGCCCTGCGCAGacagcagctcctgcaggagCAGCAGCTGCGGGAGCAAGAGGAGTACAAGCGCCAGCTGCTGGCTGAGAGGCAGAAGCGCATAGAGCAGCAGAAAGAGCAGAGGCGGCGGCTGGAGGAGCAACAACGCCGAGAGCGTGAGGTGCGGCGGcagcaggagagggagcagaggCGGCGGGAGCAGGAGGAGAAAAGAAGGATGGAGGAGATGGAGCGCAGGCgcaaagaggaggaggagcgccGGAGAGctgaggaggagaagaggagggcTGAGCGAGAGCAGGAGTACATCAGGCgacagctggaggaggagcagagACACCTGGAGATTCTTCAGCAGCAGCTACTTCATGAACAGGCCATGCTACTGGAGTACAAATGGCGGGAGATGGAAGAGCAGCGTCAGGCAGAGAGACTTCAGCGTCAGTTGCAGCAGGAGCAGGCCTATCTCCTTTCGCTGCAACACGACcataagcagcagcagcagcagcagcagcagcagcaagacaGGAATAAACCACAGCCACAGCAGCAAGCTTACCAGCCCGCAGAGCAGAAACCCCCACCTCACGAGCCgacagacagagcgagagagGCTGACGAAAGGTTTCGAAAGAATATTCAGGGCTCGCCTCAAGCACAATCCAGGCAGCCTAGCAAAGTGTTGGAACCCCCAGTGCCTTCGCGCTCCGAGTCCTTCTCTAATGGCAACTCTGAGCCTGCCCCATCCGCAATGCACAGGCCTATGGAACCACAGGTACAGTGGTCCCATCTGGCATCTCTCAAGAGTAACGCTTCCCCCGTGTCTCGATCCCATTCCTTCAGTGACCCTTCTCCTATTTTTGCACATCTTCATCTTCGCTCTCAGGATCCATACCCACCATCACGCAATGACTTGCAGCCAATCTCTGAGCCTAGAGCAGACATGCCTGAGTCTGGCCCAAAGGATAAATACCCAGGGCCCTGGGCTAGAGCAGACAGTGAGGAGGTCCCACCCAGGGTTCCTGTGAGGACAACGTCCAGGTCTCCAGTGCTGTCTCGCCGGGACTCCCCTCTTCAGGGCAGCGCACAGCCCAGTGGCCCGGCAGGGCAAAGGAACTCCACCAGCAATGTGGAGCCCCGGCTGCTATGGGAGCGCGTGGAGAAACTGGTTCCCCGGCCCGGCAGTGGCAGCTCCTCCGGCTCCAGCAACTCCAGCTCCCAGCCCGGATCCCAGAGCGGCTCCGGAGAGAGGTTCCGAGTCCGATcaTCTTCAAAATCAGAGGGATCTCCATCGCAGCGTccagaaaatgctgtaaaaaaacCAGAGGAGAAGAAGGATGTATTCAGACCAAGCAGGCCAGCGGACCTCACTGCCCTGGCAAAGGAGCTGCGAGCCGTGGAAGATGTTCGGCCCCCCCACAAAGTGACGGACTATTCCTCCTCCAGCGATGAGTCGGGAACCACTGACGAGGAGGATGAAGAGCTCGACCAGGAGGGAGCGGACGAGTCCACTTCTGGCCCTGAAGACTCCAGGGCTGTATCTTCTAAAGTGAGCAATGGGGAAACAGAGTCTGTGAAGACAATGATCGTTCACGATGAAGTCGAGAGCGATCCTGCAGTCACTCCCTCCAAAGATGGCACTTTAATTGTAAGACAGAGCGCAGGTGACAAAAAGCGTCCCAGTCATCAGGAGAGCAATGGCTTTGCCGGTCGCATTCACCTCTTGCCAGATCTCATACAGCAAAgccattcctcctcctccacctcctccccaTCCTCCAGCCAGCTGACTCCCTCCATGTCCCCCCAGACTCCCCTGGACAAGCTCACTGCTAACGAGACCCAGTCTGCTAGTAACACTCTGCAGAAACACaaatcctcctcttccttcacGCCCTTCATCGATCCCCGCCTGCTGCAGATCTCCCCGTCCAGCGGGACGACTGTGACGTCTGTGGTGGGATTTGGCAATGAAGCCATGAGGCCAGATGCCCTTAGACAGGACCCTACCAGGAAGGGCTCTGTGGTGAACGTGAACCCAACCAACACACGACCCCAGATAGGTACTGAGAGTGGCCTAATGCTGCTGGACAGGAGTGGACAGGGGAAGGTATATCCTCTGATTGGTCGTAGACGTTTTCAACAGATGGACGTGCTTGAAGGCCTTAATGTCCTGGTGACAATATCAGGCAAGAAGAACAAGCTGAGAGTTTACTACTTGTCCTGGCTAAGGAATAAGATCTTGCATAATGACCCAGAAGTGGAGAAGAAGCAAGGGTGGACAACCGTGGGCGACCTGGAAGGCTGTGTGCACTATAAAGTTGTAAAATATGAGCGCATCAAGTTCTTAGTAATTGCATTGAAGAATTCTGTGGAAGTCTATGCATGGGCACCCAAGCCATACCACAAGTTCATGGCCTTTAAGTCATTTGGAGATTTGGTGCACAAGCCGTTGTTGGTGGACCTGACAGTTGAAGAAGGCCAGAGGCTGAAGGTGATCTATGGCTCCTTTTCTGGATTCCATGCTGTGGATGTGGACTCAGGGACGGTTTATGACATCTATCTACCGACGCATATCCAGAGCAGCATTCAACCGCACGCCATCATCATCCTGCCCAACACCGATGGCATTGAGCTGCTGGTGTGCTATGAGGATGAAGGAGTCTACGTCAACACCTATGGCAGGATCACCAAAGATGTGGTTCTGCAGTGGGGAGAGATGCCCACTTCAGTCGCCTACATCAGATCAAACCAGATCATGGGCTGGGGGGAGAAAGCGATAGAGATCCGCTCGGTGGAGACTGGCCACCTGGATGGAGTGTTCATGCACAAAAGGGCCCAGAGATTAAAGTTCCTGTGTGAAAGAAATGACAAGGTATTCTTTGCCTCTGTCCGTTCTGGTGGCTCCAGTCAGGTCTACTTCATGACCCTGGGAAGAAGCTCCCTTCTGAGCTGGTAGGAGAAAAGCCAGGGAACCCAATGGACAACTGTTTTTCACAAgatatgaaacacaaaaaaacctTGAACTAATCTACAACTGGAGAACAAGCTGCACTGAGGCCATATTCTATCTAAAGGCTGTCACCTGGTGAAAATAGATTTTAGAAATTACAAAACCATAGAAAAGGAATGGCTGCAAAGCCCCTGGTGCTGTTAAGATTATGGCTGTCAGGTGCCAGTCGCACGGTGGCTTTGACATGCTGTCAGACAGTAACACCTCAACTGTTTCAGACTTCCTGGGCTTCAGATGACTTTGCTTGTTGACAATTTTACAGAGCCCTAACATGAATAATATAGCAAAGCTAAACTTTGGATAAGCAAGTGAGAACGAGAAGGGATGGCTGCATTGGCATCACAGAGGGTTAGTCTAAAAGTATTAATACtatagtgtatttaaatgtctttctttttgatAGTGACAGCTGAAAATGGGAGGAGGGGGCaggatttagtgtttttaatgtcagGATGGAAAGAGATGGGGACTGAGTTGTGTTCTGTGAATTGGTTGCACCTGAAAGCAAAGGACCAGAGATGTTGATTTCTTAAATTGTTGGGATTAGGGTTATGTTGCAGGTTAAAATCTACTTCAGaataacatttgtgttttttttgtttgttttctgcatagaagtgcaaaggtttatttttttgttttttgtcctccTAAGTTTGCACTTAGATccctttttaagttttgtttagtttttttaacctACCTCATTGTTGAAATGCAAGAGCTACAGGAGGTGGTTTAATGCTTTCTAAAGAATTGAAATACAGCAACAAAGTCTCTTGTTTTGATTCTTTGTCAAACCAAATTGACAGCAAACTTGTTTGGGAGGGGGGAATAATGGACTGATATCATGCCAGCAGACCATTGAATAAATGACCTGAAGGCAGTAATGGCAGAAACAGCGAAGATACTGGTTTTGAATAATGGAGAAGCATGAAACATCAGAAATGTTATACATGGTTTTAAGGTTAACTAATACAGAGGTGACTGCTTAATTCAGCTAGAAATCAGATGTTTGTAGCAGGTGGTAACTTTGCTAGGATTCTTAACTGTATGTAGTAGGaaaccagtgttttttttgttttttcccttttctttgttttctgaatgCAATGcactaaatatatttcaagaatGTAGAAAATACTGCTTAATGGTAAATGGCATAATCTGTACTTACAATGATGCGAGatcccagtccagtccagaagtttttttgtttttttttgtttgttttttttaagacaaaatgGAGAAGAGCTGGAATGATTTTGTtggacagaaaaaataaataaatcttgaaATTTACAGTAGTGTATCAGCAGTTCTATGTTGTTTAAACTGTCTTTTCATTACTTGAGAGACTTAAAGTGTATAATACGTTGGTGATGTAATCAAACACCGTGGTATTGCATTATCCTACCGTAGGCTCCTTTTGGGTACCGTGTTGACAGCTGCCTTAAAGCTGTTCATTCATCGAACAGAATCTGTTTCTTATAGGGCTTAGACTTCTGCAATCTCGATATGAAACAGCATGACTTGTAGGGCATTTTTGAAGTTGTATACTTGGTTAACTTTTAAATGGCAGGTCATATGAATAaccattttataaattaactgGTTTCCCAAATCATGAAGCAAAATGCATCTAAGTGTGTGAAGGCTGTTACAGCACAGCAAGCAGTTTGCATGTGAAGGCATAAAGTAAACCAATGTGGACAACCCATCTTCGGGTCACTCTTTTACCccgttttatttgtttaagcaCTGAAGGCAGttcccccctcctcctgccACAGGaggatttcttcttcttcaaaatgCTCTATTTCAAGGAGCCAAGATGTTTGTAATATTAGAGAAAAGTTATGTGATCATCAAAGACCTAAAcgcatttctctttttttttttctctggggAAGTtggttcattttcatttttaatgtccTCAAGGCACTGCACTTGTACTCGCAAAGTATTTGATCCAATTTCTTGTATGTGaaatttcaaagaaaacaaatgtgtatgagGTCTTTACGGTAATTAGTCCCTCAAATACTGTCTCTCATTTGACTATCTCATTCTTGTTGCTAAATACAGTACGGCCTTTCAGACATAAGTGACTTTACCATTAGCAGAAATctgttgacattttaaagtagaaaacattttctctcgGCAGTCTGTGACTAGCAGCTCCCACTGTAAGAGGTGTGCCAAGGTGGCGATTTTACAAGTAACAGTATTACAAAACCACTACATGAAAATCATTTTGAAGAACTCTTTGAGcatcatatatttttaacttctaGATTTAGTTGAGAAGCTTAATGAtagttgattttatttctgtaacttGCGTAACCCTAATTATAcgactgcagtgtttttaatattatgcaCACGTTATGTTGAGAAAATGTTTAcagaaacaatgttttgttaCACTAATGTGCATCatatatttatggtttatttgaaagcatttttgtgtttttttgttttttttagcttgttttgtattataagtacacttttttttatatatatatatccataacCCTaaattctgctgtttttttttttttttaagatacaaaagtaatacaaatgacaaattGTGAATTAATTACTAGTTATCTAGCTGCAAAGCAGACCGGTTACaggttaaaatgttttcatccaTCGTTTCTGCCATGCTAACTTATGTCCTCTGTGTATTATGGGAATTCCTGTATTTTCCTGAAGgtcatttttttcttgaataaACTCGAAGTAATATaccctgtgttttgtttttgcttgtctGGTGTTTGTCTCAAACTGAAGGAAACGCTTGCATTTAACAGGAAGGATGTGGGAATGGGTAACACTAATATCTGTGCAGTTATGAAGTTCTTCAGATTTgtcaagattttaaaaagcagccaGAACAGGTATTACATTTGAGTTCAGATTCATACAAGTGATGGTTCTTGAGCTTGATGTAATTTTCTCCATTAAATTTACTTTtggaaaaaaggaagaatgCACTCAAAAAAGGAAGTGATGCGTATATTGATGTTGCAAATCCCTAGCATGTTCGCTGTTATATAACGTAAGGGAACCGCGCTCCCTCCcctctttttttcattttattttccttccgaCCACTGTGTAAATATAAACTGGGTGCACACTGACGTAAATGACGCTGTCAATTAAGTGTTGGGGGTTCCCTGGAATTTTGTTATCGGCAGGATTTaatgttatgtttgtgtgtgttcctatgtgtgttcatgttttaGTATTATAGAAACTGCTgcgaaaaataaaatcataaccCG

Function

GO: NA

KEGG:

id description
K04407 MAP4K4, HGK; mitogen-activated protein kinase kinase kinase kinase 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88084 lncRNA upstream 94359 15727434 ~ 15728917 (+) True G70496
TU87982 lncRNA upstream 298261 15522525 ~ 15525015 (+) True G70418
TU87979 lncRNA upstream 317228 15505814 ~ 15506048 (+) True G70415
TU87977 lncRNA upstream 322444 15500558 ~ 15500832 (+) True G70413
TU87973 lncRNA upstream 372008 15450778 ~ 15451268 (+) True G70409
TU88167 lncRNA downstream 47534 15918413 ~ 15918621 (+) True G70562
TU88264 lncRNA downstream 366231 16237110 ~ 16240338 (+) True G70637
TU88391 lncRNA downstream 619532 16490411 ~ 16491118 (+) True G70735
TU88448 lncRNA downstream 859999 16730878 ~ 16733637 (+) True G70776
TU88522 lncRNA downstream 1158081 17028960 ~ 17097964 (+) True G70835
AMCG00014501 mRNA upstream 41726 15780589 ~ 15781550 (+) True AMCG00014501
AMCG00014495 mRNA upstream 74158 15735645 ~ 15749118 (+) True AMCG00014495
AMCG00014494 mRNA upstream 97836 15715800 ~ 15725440 (+) True AMCG00014494
AMCG00014496 mRNA upstream 119817 15700154 ~ 15703459 (+) True AMCG00014496
AMCG00014490 mRNA upstream 137377 15675783 ~ 15685899 (+) False AMCG00014490
AMCG00014503 mRNA downstream 3704 15874583 ~ 15877671 (+) True AMCG00014503
AMCG00014505 mRNA downstream 14384 15885263 ~ 15903047 (+) True AMCG00014505
AMCG00014504 mRNA downstream 36702 15907581 ~ 15916966 (+) True AMCG00014504
AMCG00014502 mRNA downstream 76701 15947580 ~ 15954701 (+) True AMCG00014502
AMCG00014506 mRNA downstream 137520 16008399 ~ 16036760 (+) True AMCG00014506
TU88057 other upstream 143488 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other upstream 143488 15675631 ~ 15679788 (+) False AMCG00014490
TU87778 other upstream 1466408 14336858 ~ 14356868 (+) False AMCG00014461
TU86705 other upstream 5814628 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 8406682 7413640 ~ 7416594 (+) True G68848
TU88218 other downstream 258646 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 594802 16465681 ~ 16469113 (+) False AMCG00014525
TU88601 other downstream 1532632 17403511 ~ 17448453 (+) False AMCG00014553
TU88725 other downstream 2400975 18271854 ~ 18274360 (+) True G71004
TU89430 other downstream 6984463 22855342 ~ 22855646 (+) True G71525

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00060721 False 4201 mRNA 0.51 31 NC_007116.7 38305573 ~ 38384289 (-)
grasscarp (Ctenopharyngodon idella) CI01000039_08214054_08244061.mRNA True 3635 mRNA 0.51 29 CI01000039 8214037 ~ 8244061 (-)