RNA id: AMCG00014509


Basic Information

Item Value
RNA id AMCG00014509
length 4303
RNA type mRNA
GC content 0.50
exon number 17
gene id AMCG00014509
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 16155258 ~ 16164120 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTCGGAAAGATGTATTGTCTGTTTCTAAGGGAGCGCGGAGtttgtcaatgtgtgtgtactTGAGCTTTTGGAAAATATTAGGTCTTGATAGGAAGCACAGTAATTGAAGGAAATTATTAGCATGTCTATACACCCTGCCATCAAGATACCCTGAAGAAAGTAAATGATGTCATCTTCAGCTGGGTTGCAGTCAGAATCAAACATTCTAGCTCAGTGGATGCCATGCAGTTCCCGGGCTGGGGTAATACTGAATCATCAACTGGACTTCGTTAGCCCCTTGAAAGCCACCTGGATGCCAGAGGATGTCAATGATTCTTTCTCCACCCAGTTCGTCCCACTCCCTGCGTCAAATAACAGTAGCTGCCTCAGTGTGGACTCCCTTCTGCTGGCAGATGCTGCAGCTAAAGGCACCTCAAACCAGGAGGGTGACGCTTCGTTTGACATCAGAGCCCTCCAGCCCACTGGACTGAACACTATCTCATCACCTGCAACTTCTGAAGGTCTGTCCCGGGAGCTAGACAGCATGGATGAGGCTGGCAACACTAGACAGAGGCATGACTTTCCCTTAATGCAGAAACTTGAACAGttgAAGGAGTGGCAGCAGCAGAAGCAGGAACAACTCAAGCTCCACCAGATGCAGCAGCTCCACCGGCTACTGGAGGAGCAGCAGAGACTGCTCCACATGGTGTCTGCACAGCAGGCCCTCACAGGTGACCCCAAGATGCCCGAGCCTGCTGAAAATGAAGAGATGTCTGCCTACGATGCTTCAAAGGGACTTTTCTCACTACCAAATGTACACACTTATTCCAGTGTGACTGACTGTAGAGTCCCTGTGGAGCAGTATTCCTTAGCGCTGCAGGCAGAATCCCCTGAGCAGAAAGCAGACCGGACGTTGAGAAACAGTGTACTAGGGAGCCCCTGTGATCCAGATACCGAAGAAGAGGAAGATTCAAATGCAACTATGGGACAAAGCCTCTCTTCTGAAGGTCCAAGTAGTGAAGAGCTGCACAGAAGCAGTATTTATGAAGACACACCTCAGCCCAGGAAGCCCCGTGTGACACAAGAGTCCCTCCTCCGGGGCCCAGACGGAGATGATGCCTCACAGGAAGAACTCTTACAGACAGGGGACAGGCCAATCAGGCCTGGGATTGGAGGCAGGAAGCAGACGTTTGAGGAGCTCCTGGAGGAACAGCTGAGACTGGAGGAGCAGAGGCTACGAGCGACTGAACTGGAGCAGCAGggCCCAGCTCCGACCGAGGAAATAAAAGACAACCCTAAAAGAACCTTCCTGAAGCGTGGCGAAGGTCTTTCCCGGTTTACTAAAGGGAAAGCTGTTCCAGTCAAGAAACCCATTAAAACCAATGCTAAGGCACAGCCCAAGCATGTTGTGAAGAATGCCCAACAGCAAGAGCCCAAGAACACAGTAAAGAACACCCTACAGCCAGTCCAGCGCAAGACTGCCATTTTGAACAAAGAGAACAACTGTGAGCATTTAAAGAGCCCTTTCAACCGGCCAGAGCCCGTGTCCTTGACCAGGGGGGGGCAGGTGCTGAAGGTTCTTGGCAACCATATTGGGCAGACTCAAGACCCTGCAAGAGACTTCAGACCTCAAAATCAGAGCAAACCACTGGGGCAGGTTGCGAAATCCCAGGAAGCAGTGGGCATGAAGATTCAAGGGATAAGAGTAGAAGCTTCCCAAACAGTGTGTGCTGTGCCTGCAAAGACTGTTGTAAAGCAGGCATGTTTGGAGGAGAAAGGTCAATGTATACTGCCGCAGTTATCTACAGACATACCTCCTAAAGACCGGGAGTATTCCTTTGAGCTGTCTTTCCAGAGGAAATCCGAGAAGTGGGAGACGCAGAAACAGAAGGAGAACATAGAACTCGATGAGTTTGAGCTTCTGGAACAGGCAGCTGATGAAATTTCCTTTTCTAGCAACTCCTCCTTTGTCCTAAAAGTGCTGCAGATGGACCAACAGGAGCACAGAGGGCACAGGCTGTCCTCTACACCTGTTAAATCTCCACAACCTTTGAAGGAAAATCCAGAAACCAGCAACAAAGCTGGCCAGAGTCCCCTTGGCTCCCAGACTACACGAGAAACTGGGGGCTTCAAGCAAGAGGAGGCTGAGCAGGCAGCAAAATCAGAGTGGGATTTAAAGGACCAGAATAACGATCCAGAGGATAGAGGAGATGAATCCAGTGCAATGGATGCAGTATGTGACCATTCGTGGCAAAGCGATTTAGACTCTGAGGACCTGGATGATACTCTGCAGGATGAAAAGACCCTGCAGGAGGGGAAAGCAGGGCCCAGTGGTCTTTATGACTCCAATGCACTCCAATATGACAGATCATCCTATCAAGATGGTGCTATAAAGCACAGTTTTGCAGCCAGGGAGTGTGGTTATGGGAGCACTGATGGTCTAACCACTACTGGAGACAAGGggacaaataacacaaatggcTTTGTGTTTGACGATGACGACACGTGGAATGACTTCAATGACACTGGTAACGTGGAGGTGGAAGATATTCCAAGATGTCCGGAAGTAGCCCATAGTGAGTCTGTCTCCCCAACCGAAAAAAGCACCTCGCTGACAGACAGAGCGCTTAAGAGGAAGGTGGCTGCGGTGAAGACAGCCGAGGCTAAATCAGGAGATGGTTCAGAGCCTCCCCCAACTTCAGATCTGATAGCCAAGCTATTCCCATCCCTGAAGCCCAAACCCAAACCTGCTCCGTCTCAGGACACTGCGTCGAGTAATAAAGCAGCTGAGCAAGCATCAGGGAACAACCCCCAGTCTACGTTGCTGAGGCACAGGCTGGTGGAGTTGGAGACGGAGATCGAGCGCTTCAGGGCAGAAAACTCTGCGCTGGCAGTTCTGCggcaggagagggagaaggcACTGGAGACCCTGAGGAAGGAGATAGCAGAGACTGAACGGAAGAAGTCTGAGGAGctcgctctcctggagaagctgAAGAAAGAGGAGATGAAAAAGCTGCAGAAGGAGCGCaaagtatttgaaaaatatgctGCCGCCGCCAGGGCCATACCGGACAAGAAGGAGCGAGAGGAGATGCAGGTGCTGAGGCAGCAGGTGACGTCCCTGCAGGAGGAGCTGCAACGCAGGGAGACGCGCTGGGCCAGCACCCACAGCCGTCTGCGTCAGCAGCTGGACACCGTGAGCAAAGAGAACAGTGCCCTGCGCGATGAGGTGCGGGCGCTGGAGCGACTGCGTGTGCAGGCATGGAGACAGGCAGAAGCGGAGTCTGGGAAGCCCAACCAGGCAGACGCCAGCACACATGGCCTTCAAAGAGCCAAGTCCACTAGTCCTCTGTGTGCTGTGAAGAGTAGCCCTCCAGTGACAAAGCAAACACAGAAGAACAGCCCCCCAGTGAGAGTCAACAGTAAGGGATCTACCCTAGTCCCATCCAACACATCTGTTCCAGAAGAGCAGGTGCTATCAGAGCCCAGGCGGATGATGCTCTGCCCACAATCTCCTTCTGCAGTCCCTCCTAGCACGCTGCAGACTGGGCTGTTACAGACAATGTGTGACGTTAAGGAAAGTGTCGATATCCAGGAGGAAATCACTCATCCAGATGGAAAGATAGAACGGCTGTTACGAAGTGGATCCAGATTAATTGTTTTCCCCAATGGGACCCGTAAAGAGGTGTTGGCGGATGGGAAGACTGTGAAGGTTACGTTCTTTAATGGGGATGTTAAACAAATCATGGCAGATCAAAGAGTGATTTACTATTATGCTGATGCTCAGACAACTCATACCACCTATCCAGATGGCCTGGAGGTATTGCAATTTCCAAATAGccaaatcgAAAAGCACTTCCCCGATGGCCGAAAAGAAATCATATTTCCAGATCAGACCATTAAGAATCTGTACCCCGACGGCCAGGAGGAAAGCATTTTCCCAGATGGATCTATAATACGAGTGAAGCTAGATGGAAGTAAAGTCATTGAATTCAACAATGGGCAGAGAGAAGTGCACACAGCAGAGTACAAGAGGCGAGAGTACCCTGATGGGACGGTGAAGACTGTGTTCGCCGATGGGCAGCAAGAAACCAGATACACCACCGGCAGAGTACGGGTCAAGGATAAGGATGGGAATGTGGTAATGGACACTAGGAGCTAGACTGGACACCAAGACTTCACAAACCATTGGACTTCTTGCATGTCCAGATTccaagagtgtgtgtgttttaaccagGGAAAATGTCACATGGAACTTTGTGTTGTATGCAGTGAAACTGAGTGGagtgttaaattaaatgtaaataatgtatattaaaa

Function

GO: NA

KEGG:

id description
K11502 CENPJ; centromere protein J

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88073 lncRNA downstream 451944 15701495 ~ 15703314 (-) True G70491
TU88074 lncRNA downstream 452922 15700208 ~ 15702336 (-) False G70491
TU88034 lncRNA downstream 510344 15643619 ~ 15644914 (-) True G70458
TU87985 lncRNA downstream 630244 15522520 ~ 15525014 (-) True G70420
TU87990 lncRNA downstream 648747 15506304 ~ 15506511 (-) True G70425
TU88297 lncRNA upstream 48424 16212544 ~ 16214127 (-) True G70660
TU88319 lncRNA upstream 117565 16281685 ~ 16281899 (-) True G70679
TU88331 lncRNA upstream 202004 16366124 ~ 16369464 (-) True G70689
TU88386 lncRNA upstream 301659 16465779 ~ 16469228 (-) True G70731
TU88472 lncRNA upstream 557953 16722073 ~ 16723550 (-) False AMCG00014539
AMCG00014510 mRNA downstream 87696 16041233 ~ 16067562 (-) True AMCG00014510
AMCG00014511 mRNA downstream 162102 15973353 ~ 15993156 (-) True AMCG00014511
AMCG00014497 mRNA downstream 404093 15749334 ~ 15751165 (-) True AMCG00014497
AMCG00014498 mRNA downstream 457547 15679795 ~ 15697711 (-) True AMCG00014498
AMCG00014499 mRNA downstream 479131 15673026 ~ 15676127 (-) True AMCG00014499
AMCG00014515 mRNA upstream 67445 16231565 ~ 16250776 (-) True AMCG00014515
AMCG00014521 mRNA upstream 136513 16300633 ~ 16307473 (-) True AMCG00014521
AMCG00014520 mRNA upstream 144168 16308288 ~ 16308806 (-) True AMCG00014520
AMCG00014519 mRNA upstream 152414 16316534 ~ 16346355 (-) True AMCG00014519
AMCG00014518 mRNA upstream 211300 16375420 ~ 16376973 (-) True AMCG00014518
TU87063 other downstream 4492765 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 5357111 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 6838091 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 7771034 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 7996668 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 12165619 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 13225170 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 16099047 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 16433342 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 16433342 32597462 ~ 32619149 (-) False G73127

Expression Profile