RNA id: AMCG00014510


Basic Information

Item Value
RNA id AMCG00014510
length 5543
RNA type mRNA
GC content 0.47
exon number 15
gene id AMCG00014510
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 16041233 ~ 16067562 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATCTGGGACATTCCTTCATCTGGCCAGCACACTGTATTACAATCAGCTCTTCACAGCTGCCCCTCCTCAACGCGTAAGAGCGGCGAACCCGGCGGCGCTGGGACCGCACGGTCAGAGGACTCACTCCGGTTAGGGCGCAGACAGGTTGTCTTCTCCTGATCTGCGCACAGAGCATGAAGCCTGACGCCCAGCAGTGTGTGCCAGTATACTTACACACACGTATCTAGTGAAGATGTTCTGAAATTGTGCaagaccttttttttccccctgttgcCTGGTTGGAGAAGTTGGGATGGATATGGGACTAAGCGCAAACTGACATTTGTGAAGGTCTCTTCTCAGCCTTCATGGAAACTATGTCACCTCAGCAGGATCATATTGGCCAGAGTCGCTCTGCATCTTTAACAGGAGAGTCTAAGATCTGTGGGGCACCAGAAGGCAAGAAGAAAATGAAGACCCTAGCACAGAGGAGGCAGTCGGCACCATCGCTGGTCATCAGCAAAGCACTCGGCAAGTCCAGAACCATCTCCAGAGAGAGCTGCCTGTCCCCCATCAGCCCCGAGTCCTGCCCCCTGGTCCAGTCGTTCCTGTGCCCTGCACGAGTGTTCGTTGCAGACAGCCATGTCCAGCTCAAGGCAGGACTGCAGACACAGGAGAGACATCTCTTCCTGTTCAGTGACATCCTGGTCATCGCCAAATCCAAATCCACGTCGCACTTTAAGCTGAAGAATCGCATCCGTATCTGCGAGATGTGGACAGCCTCATGCATGGAGGAGGTGTGTGAGGGCAGCACTAGCCCTGACTGCTCCTTTGTCATGGGCTGGCCCACTACCAACTGTGTGGCTACTTTCAGTTCAacagaggagaaagaaagatgGCTTTTCTTAATAAAAAGCCGAatcaaagaggaaaaagaaaaagacgaTACTATAACAatccctttaaaaatatttgcaaaagaTATTGGGAACTGTGcctatTCCAAGATTCTGGCAGTCAGCAGCACAGACTCAGCCACAGATGTCATCAAGGTGGCACTGCAGCAGTTTGGTCTTTCTGGCTGTGTGAAAGACTACCAGCTGTGGGTCAGCTCAAGCAAAGATGAAGCGCCTTATCCTCTGATTGGACATGAGTATCCCTTCAGCATCAAAATGAGTCACATGCGAGAGCCAGCGTCCCAGTCGGGTGCAGTCGTAGTCCGGGAGTCGGCCTCCCCCCAACAGATACAGGGGGCTCTCCTCCTGGAACAGCTGCCTCTGGAGACACGGTGCCAGTTTATCCTGAAGCCCAGCCACATGGCCATGTGCCAGCAATTACTGGAACCCAGCCAAAAGCCCTTCAAGAGGAAAAGGTCGCTTATAAACTGGGCCTTCTGGCGTGGTTCTGGGAACCAGCTTGACAGCCTGCCACTGTCTCCCACCTCCCCCAATCCCGGGCGCCTCTTCGGTCTTCCTCTGAGCGTAGTCTGTGAGGATAACAGTCTGCCCAAGCCAGTCATGGACATGCTGAGCTTCCTGTTTCAAGAGGGCCCGTTCACAAGAGGCATTTTCCGCCGCTCTGCCAACGCAAAGGCCTGTCGAGAGCTGAGGGACAAGCTGAACTCTGGAGCCGAAGTCCTGCTGAACTCTGAATCCATTTTTGTGATGGCCGCTGTGTTTAAGGACTTCCTGAGGAACATTCCGGGCAGTCTTCTCTTTTCGGAGCTCTATAACAAGTGGGTCAATGTGATGGACCAAGGCAATGATGAGGAGAGGATACTGGCCATCCAAAGACTCATGGAACAACTTCCTAAAGAAAACATGCTCCTGTTGAGACACCTTTTTGGGGTTCTTCACTGCATTGAGCAGCACTCAGAGGAGAACCAAATGAATGCTTTCAACCTGGCTGTTTGCATTGCTCCCAGCATGCTTTGGGCTCCTGCACCATCAAGCCCAGAGACTGAGAGTGAAGGCACCAAAAAGgTTTCTATCGTTGTGCAGTTTGTCATAGAAAACTGCAGTAAGATCTTCGGTGAAGACGTTACTTCCTTGTTTGGGAGTTTGCCACAGAAGTGCAACGGCAGTGATAATGGATCAGATGTCTCCTCCTTCCAGATGAACGACTCCTCGTATGACAGCTTGGAAAACGAGCTGAACGATGATGCAGATTGTCCCTTCCCAGACCTGGGCCGAAAGGACAAGCAGGACAACCGGAGCAGGGACTCTGTCATCACCTTAAGTGACTGTGACTTAGACCAGCCGGAGACGGAGCCCATCCACCTGCAGCTGCCGCCGCTGTCCAGGCCGAGGCGGTTCACTCCTGCCGTGCGTCAGAGCAGGCCCCGCAGAGAGTGCCTGGACAAGGACTCTCTGTACCCCAGGGGCGCTAGAAGACACCGCCGCTGTTCCGAGCCGGCCATCGCTCTCTTGCCTTCAGGCTTGGGCCAACATTTGGAGAAACATGACACGGTGGTCCGCAAAGCCAGCTACGATGCTGTCATTACTAAAGTCGAGGACGGCTGTGTAGAGCAGCTTCACTGCTTACAGTTGGATGGACTCATGAATCTCAGCCCAAACACAGGCAGAGACTTGAGAACAGCAGGCAATGACCGTAGAGACTCACAGAACATTTCAAGACTAAAGCTCAAGCAGCCACCTCCCCTGAGGCTAAACCTCTGCCCGGCAACTAGCTGCTCCAGTCTGTCCTCCCCTGGTACCTCCCCATCTggctcctccatgagctccctGGACAGTGCTTTCTCCCAGTACTCTGATTACTCTGTCTTCACCCCCACTGAGCCCTGCTTCCCCAGTGGGACTCCCAGGGCACAAGGAGACTCTTCTCCACGGTTCAGCACCTCCACACATTCATCTGACTTGCTGTCTCCTGGACTGCACTCCCGTCCTGCTTCATGTTCCTCTCCCAAGATGGAAAAGGACAGGCTAACCAGCTCTCCCAAGGAAGGCTGTGACTGGGCCCTTCAAAGGAGTTGCCACAGTTTACATCCCAACACATGGCTCAAGAAGGACCGCAGCTGGTCCCTTCACAAGAAAGAAAGGAGTTGTGCGAAGCAGGAGAGTGTCCAAAGTAAGAGCCCAGACAGGCTGCCACTTTCTAGTGAATCTCCTTTAGAAGTATCTGGCCAGGaacatgaacaaacacacaaagaatcAGCCACGGTGGCCAAGAGACAACACAGCAAGCCACCTTCCTACCAGGAAGCCATACTGCAGATAAATCGGTCGAAGCCTCCCTTTTACCAAGTGAAACAAAAAGGTTTAACTGTAAAGGAGCTTAGGCAGCTCCATGAACATGGTGGCAGCAAGGAGGTTGTGCAACAGACAGGTGCGGTCTGTCTCCTCAAGCCACCAGCTCTCAGAGTACAGAAGAGTCCACCAGCAAGGAATGGCCCAGGCCAGTTGCCTCAAACTGTATTCTTTGGGCAAAGCAGTTCTTTGAGTGTCCGCCCCATGCGGAGGCAGCAGTCACAATCCTTCACTCTAGCCGAGGAGTGTCTCAGAAGCCCGGCGGCGCGGCGCTCTTCAGAACCGTCTGTCggctgtgggggtgggggggctgtgcCCTCTGACTTGGAGAGGCACAGACTCTTACTTGTTAAGGACAAAAAAGACTTGCAAGTTAAGAATCTGCAGGACCACAAGCTCAAGGTATCTGACGTGGACCAATCCTGCAATGGCCTGAGCCACAAGTCGGAGACCAATTTCTGTCTGTCTCCGTCCACCACCAAGGCAGTCAAAGACTACTTCTCTTGCACGGATGTGGAGAACTGTCTGAAGAAGTCTCAAGAGGTGGCCAATGCAGTCATTCAAGGCAAGAAAGAGTGGCACAGTAAGAGATGCAGTGACCCCAAGTTTGAGGACTTTGAACAAATGTTTTTCGCCGAAGAGTCTTATGTGTGAAAGGAACAGTGTAATGCTGGAcaattttgtaaataaacaggGATTTTTCACACTGTAAATGCTGCTTTATTATATAGCAACCATGCGCAGCTTCACATGTTTGTAAAGCTCAATGATGTGTGTGGCGCATTCCTAGTTAACAGagtatttaacttttatttttattttttattttgggggtgggggggagtagAAAACACTTCTGAATAATGATTAAAGGACAGAAATTATCTGACAAATTCTCACAATCCGACTCATAATTTAAGGTTTTTGTGTTTGAAAGCAATccactgtattaataataaaaacacaatattcacTGATTAAATGAGACACCAAACATGCAGTAGGCATTTCACATGCTCAAACACCATTATTTAcagcattataaatatatctatatcaaaTTATATTCCTCAGATAGTCTTTCAGTCTTTCCCACTTACATTTAAAGACCCCAGTTATCCTAATTCATGCATATAAAAAGTGAAGCAATACTCGGTAACATGTCCGACATAGCCAAAGTCAATTGGCACAgagacaataataacaacagtataattttgtgtgtgtaaggtcttttaatgtgaaaatatcaagctattcatattttatgttcacatgcaaaacaaaaacatggaagCTAGGGCTGCCAATGGTTTGGCATGATTGTTTTACAAACCGTTGAGTCCCGTGTCTTTAAGTGAAAGAAGAAGTCTGAAAGCTTTAGATCCAACACAATAGCCTGGAGGAGCAATACATCTTTGTCATTATATTCACCTTTGGTACAACACCTAGGTTACTGTGAGAAGCTAGAGCAAATGTGCTACAGCCAAAACTGGCAAAGGGTACCAAGCCATGAAAATCTGTATCCGTTTCTTTTTAAGTCTGTAAAGGAAAGGCTGTTTGAAAAAGGCTGAAATTCTTATTAATAAAGGGTTTGAGGCAGTGTATCCATTATTATGGTAtgctctatctatctatattgaTAAGGTTTGGCAGATCTGTGAAATGCCTCCTGTGTACTGTGAACTAGTTAGGAATGTGGGGAGTATTCATCTGGCCgcacagaaacatttaaagcacttaacAATCCAAAAGTTAAACGGAAAAGTCGCTACTTCGATAGATTTCGTACAGTACAGCAGAAGGGAGTATCCGTCTGGAGTATTATTTGAGGTGTCTCTGTACATTTGCAGTAATTATATTGTGGttgtttttcaaagtacattttgacattttaaagttgtattgtAAATCACTGCTGCCATAATGCATAAATGTAAGACTCTGAGAGAGGATGTTACAAGAACCttctctttttatatttgtatttcagttgaAGAATGTGTATAAtgctgtatgtatatttatacaatgcTACAGTACAAGTTCGCAGTTGTTGTTTGACCTGTAAGaaattaatctgtatttttgtacatgCTGATCCTGCTGCTGTTCCAGAAGTATATTTGCTACAAACGTGCACAATTTGTATACTGTGTATATCTATTGTAATGCATacgtataaaaaaataaagtatcaCACTTTTCATCTTTGAAGTGTCACAGAAGGCAATATGAATATCTGTCCTATCAGAGAGGCAAtgaatgtttatgtatttaataaacacaataataaca

Function

GO: NA

KEGG:

id description
K20641 ARHGAP20; Rho GTPase-activating protein 20

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88073 lncRNA downstream 337919 15701495 ~ 15703314 (-) True G70491
TU88074 lncRNA downstream 338897 15700208 ~ 15702336 (-) False G70491
TU88034 lncRNA downstream 396319 15643619 ~ 15644914 (-) True G70458
TU87985 lncRNA downstream 516219 15522520 ~ 15525014 (-) True G70420
TU87990 lncRNA downstream 534722 15506304 ~ 15506511 (-) True G70425
TU88297 lncRNA upstream 144982 16212544 ~ 16214127 (-) True G70660
TU88319 lncRNA upstream 214123 16281685 ~ 16281899 (-) True G70679
TU88331 lncRNA upstream 298562 16366124 ~ 16369464 (-) True G70689
TU88386 lncRNA upstream 398217 16465779 ~ 16469228 (-) True G70731
TU88472 lncRNA upstream 654511 16722073 ~ 16723550 (-) False AMCG00014539
AMCG00014511 mRNA downstream 48077 15973353 ~ 15993156 (-) True AMCG00014511
AMCG00014497 mRNA downstream 290068 15749334 ~ 15751165 (-) True AMCG00014497
AMCG00014498 mRNA downstream 343522 15679795 ~ 15697711 (-) True AMCG00014498
AMCG00014499 mRNA downstream 365106 15673026 ~ 15676127 (-) True AMCG00014499
AMCG00014491 mRNA downstream 414125 15619162 ~ 15627108 (-) True AMCG00014491
AMCG00014509 mRNA upstream 87696 16155258 ~ 16164120 (-) True AMCG00014509
AMCG00014515 mRNA upstream 164003 16231565 ~ 16250776 (-) True AMCG00014515
AMCG00014521 mRNA upstream 233071 16300633 ~ 16307473 (-) True AMCG00014521
AMCG00014520 mRNA upstream 240726 16308288 ~ 16308806 (-) True AMCG00014520
AMCG00014519 mRNA upstream 248972 16316534 ~ 16346355 (-) True AMCG00014519
TU87063 other downstream 4378740 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 5243086 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 6724066 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 7657009 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 7882643 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 12262177 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 13321728 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 16195605 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 16529900 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 16529900 32597462 ~ 32619149 (-) False G73127

Expression Profile