RNA id: AMCG00014512


Basic Information

Item Value
RNA id AMCG00014512
length 5858
RNA type mRNA
GC content 0.47
exon number 15
gene id AMCG00014512
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 16191923 ~ 16208140 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGCCCCCCGAGACGAGAGGCAGCGCCTGCTCAGACGGCGAGGCCTGGGCTGTGGCGCAGACGTGCAGTCACCGCACAAGTTTGGTTTcgtaagaaagaaaaaaaagcaaatatcaaCAGAGATGGCGGACAAGGCTGCCGGGGCCGAGCGGTCGGAGCACGGCGACAGTGAGCAGGATGAGGAGGATGTGTTCGAGGTGGAGCAGATTATTGATGAGAGGCAAGACGAGGAGGGGAGGATCTCCTACAGGGTGCGGTGGAAGGGCTACACCTCCGAGGACGACACATGGGAGCCAGAAGCTCACCTGGCAGACTGTAAGGAGGTGCTGCATGCATTCAGGAGGAAACAGAGCGAGAGCAAAGCAAAGAAGGAGAGTGTGGTGGAAGGTGCACAGGCAATAggctgtagtgcagtgcaggCGGGTCAGCAGGATTTGGCACCTGAGGTCAGTAATGGAGCTGATGAGAAGCAGGGGGCAGTGGCAGCCAATGCCGCTCAGAAGGACACACCACAGAAGaagtTGCCAATGAAGAGTGACCTGTTTGATGCCGATTCAGAGAGTGATGGTGAAAAGAAAGAATCGTCtcccaagaagaagaaaaagaagaagtcTAAGGAGACGGAACAACCAGACAGTCGGAAGAAAGACAAGAGGGAGAAGAAGAACAAAGCTGAGAAGGTGACAGAGTCTGAAAGGACTGAAACCGAGGAGGCTGACAGTGAGCCCATAGCCTCTGTGCCTTTCAATGAGAAACCGTGGAAGACCAAGAAGAGAGCGGTAGGACCTGAGGAAGAGTCGAAGGCCATCAAGAGGCAAAAAAAGGAGGAGTCCAAAGCTAgtggaaaacacagaaaggaTTTCATTGAGGGCAAGAAAAAGCAGAAGGCCCCAAAGGAACACAGAAGTGAGGTGGAGAAGCAGATGGATTCCACAGAGGATTCCCTGCAGGAGGAGTTGATTGAAGCTCAGTCTGACCTTGCCAACATGGCAGTGGAGGACGCAGTCAGTGAGAGCCCGGGTCTTTTAACCAGCTCCCCCGAGAAGACACCTGTACACAAGCCAATGGACTCAACGTCCTGGTCGGAACAGCAGAGCTCCCCTGATGTGAAGgccaagcagaaaaaaaataaggggCAGCAGCTGGGTGAGAATAAGCTGAAGCTTCAGGGTATCAAGGACTTCATTCAGGAGAGGAAGAGTGTGAAGCCCGAGACCCTGCTGCAGAAGAAGGAGAGCCCTCAGGCGAAGCTCAAGAACTTACTGATGGCCAACAAACCAACTGACATGATGGCCAAAGCACACAAAGCCTCCAAGACCGCAACGGACGATGAGCCAGGCTTCCTCTCCTCCGACTCCAACGAGGGCAGTTGCTCTGTCAAGaggaaaagcaaaagcaaagctCGTGAGCCTTCCCCCAGAACCCTCCCCAGGGGCAAGCAGGAGGATGCCAAGCTGGAACCGAATCCAGGTTTGGGAGGCAGTGCGAAAGGCAAGGACTCCTCCACAAAGAACGATGAGGCGGAGAAGGAACAGCCCATGTCCTCCAATTTGTTTGAGAAGTTTCTGCTGACCTGCGAGGCCAAGGACAGGATGCCGCGGAGACAGAGCAGCCACATGCCTGTCCCAGGTTTGGAAGAGAAAGCGGACCAAATGAAGATTACTCCCCCGAAGCCCACAGCCAAGgctgagaagaaaacaaaacctgcgAGAGAGACTCCCGTTCAGAGGCCAGAGCCAGACAAGGTGGAGAAGGCCCGAAAAGATCCAAGGATTCCCGAGGTTGCCACCGCCCCTGTTGCTGTGCGAGACAGCTTTGAGGTGGTACAGAGTCCGTCTtcagagacagaggagaggcCGGAGGCAGAGAAGAAAGACAAGAAGGATGATGCCCACGAGAAGGAGAGGCTGGAGGAGGTGCGGGAGCGACGGGACGATTTCagggaaaggagagagaagtggGAGGAGCTGAGAGAGCGGTTGGAGAGGAAGACGGAGGTGATGTCTCCAGAGCCAGGGGATGAGGGGACGGGAAGGTGGAGCTCTGGCGCTGTCAAggacaggaggaggaggcgggagGACAGTGAGCCGCGCCTGTACATCGCCTGTGACGACAACCACGAAGCGCGGGACCCTCTGAGTCTCGCTGACAAGACCTCTGaaAGGGCAAAGCCGGTCCTCAATCTAGGTGTGGACCTTAAACTAGACTGGATGACCCTGGAAGACTTCCAAAAGCACCTGAATGGAGAAGATGACATTCTCACTGCTACGACTATATCATCCAGTGAACTTCGAGAGTCGGTGAAAAGTGGAGACTACTTGACTGTAAAGCTCGCCCTGAACTCGAAGGAGGACTATAATTTGGATCAGGAgGACTCCAGTGGGATGTCCCTGGCGATGCTGGCCGCCGCGGGGGGGCAGGATGACATCCTGAGGCTGCTCATAAAGAAGGGAGTGAAGGTGAATGCCCGGCAGAAGGCTGGTAACACCGCACTCATGCACGCCGCAGATAAGAACTTCTTGACGACTGTGGCCATCCTCCTGGAAGCTGGTGCTTATGTCAACGCCCAGCAGAACAGCGGAGAGACTGCTTTAATGAAGGCATGCAAAAAAGGGAACGCCGATATAGTGAGGCTGCTCTTGGAATACGGTGCCGACTGCAACATCCTGTCCAAACACCAGAACAGTGCCCAGCACTATGCCAAGCTCCACAACAGCGTGCAGGTGTATGATCTCATCAAGGCACACATGGACACGCTGTCGAGTGTGGCGGAGGACACGATCCGGGATTACTTTGAGACCCGCCTGGTCCTGCTGGAGCCCGTGTTTCCACTGGCCTGTCACAGACTGTGCGAGGGGCCGGACTTTGCACGGGAATTCACCTACAAACCGCCACACAACCCAACTGAGGGCTCTGGGATTCTCCTCTTCATCTTTCACGCCAACTTCTTCGGTGGCAATGAGATCACGGCGCGGCTCTGCGGGCCCTGCAGTGTGCAGGCGGTGGTGCTCAACGACAAGTTCCAGCTGCCTGTGTTCCTGGACAGCCATTTCATTTACTCCTTCAGCCCTGTGCAAGGACTGAACAAACTCTTCATCAGATTGGCAGAAGCCCCAACGGCTAAGGTGAAGCTATTAATTTGTGCGTATAGAGTCCAGCTACAGTGAAGCGTAAACCGCGGAGGACATGCCCAAACCCAGAATGCTGGACAGGCCAGGCCCCACAGTTCTCCAAAGACAACACCTACCTATGAAATAAAGCAACTCTGATGAGGGGGGGAGGTGGCTCAAGTTGTGGCTTCTTGCACAGTTACATACTTTTTAAGATCTAATTCATAAGCTGTAGTATGTTTTAGGACTGGTGTACACAGCCTCCCCGTTTTAAAGCCTGTTATATCTTTTATACGTATGGTTTTGTTACAAGGATCCTTTGTGTTCTGCTTAATCTGTCTGTACGCTCGCTGTAAAGTGACTGGAATGATCCTGGTGAGGGGAGGGTGGGAAATGCTGCAACAATAAACCCACATGTGCTGGTTGATCTGTCAGAGATGCCGTTTCTGGACCAAGCTTGTGATCCACTCCAGGCCATTTTACTAAAACgatttgtgaaaaaatacattgctgGTCAAACTCTGGaacttgtttgccttttttggGTGTTTgctctaaattatttatttttgcttaaatGGTTGTACAGCAGTTTCTTCCGCATTCAGTGACCTCAGACAGTGGATTAACATCTGTAATTGTTCTGACAACAGTCATAGTTATGGAGACCAACTGGTAAAAGCTTGgtgaatgaaactgaattgGAAGAGTACGATCTTCTCGGGCCGTGCAATCTAGGAGCCAGCGTACCTGCTGTGGTGTTCAGCTCTGTCCCAGGGCCGCAATCAGCTGGGTTTGATCGGTCTCCATAAATCCTTCACTCCTATCAACTTGAGGGGCAAAAGTTATTGTTCCAGTTAAGCAAAGACTTAGTAGAATTTACCATTGAATGAAAAGGAGAAGGGTAACCCTGTAGTTACTGAGGATGGACAGAGTGATTTtccagcagttttttttttgttttttttaatgaaaagaatCCTGTTCCAAAGGGctgaaaagagaaataaaatctatatgTATGGTCATTGGGATATACCATTAAATCTTTTCTGTATCCTGCAACGTGTCACTTGTCTGTTATACCACGTTTGAAGCTCAGTTATGCATTCTGTAGTAATTTATGTATGGTCTGAATGAGCTTGTGTTGATGATCGCAATCATATTGTTTCATGAAAAGATGTTGCTTTTTTCACCAAAGACTTTAAGCTTGTGTAAGGCATGTAGGGTGTCTTCaaatatgcagtttaatgtccaTCTGGGCTTTGTGTATTCTGTTACATAGAGATCACTtccatgtatttttctgttttggagtCTTTATCAGagatatttgcattttcaagtAATCAAGGTGACAACCCAAAAACTACTTGGCAGACATTTTAATCAATATAGTTTGAATAACTAAAAGAATGACAGATTAATTGGCCATTGAAGactacattttccaaaacaatctCCTTAACTGAAACCTTTTGCACAGAAGGTCACCTATCAGTTATTTATACTTAAGACCGTTTTCAGTCTAAGCACCCTGTTGCTCCAGGTCTCATTTGTTTGTGCAGTGTTGGCGCCCCATCACTTACTAATGGCAGCGTCATTTGAACAGTCAGATATAAAAGGGTTCAGATGAGGCTTTCTCAGACTTCTCATTTCACCTAAAGGTGTATAgatttaaataagaatataactaaacaaaaatctTGCAGAAATGTGATGGGTCCAGTAAAGCCATATATCTCAaggtaatggtttatttacaggTCTGTTTAAGAAAcctaaaatgtaatctttttaaACCTGCTGCTCAATGTGTGGTGGTGAGTTAACTACATATTTTTGCAGTTAGCTGGTCAGTGCCTTTTTATCTAGAGGAGTGAAAGAAGCCTAACATACTGGTGTCTGTTAAGCATTCAACTGTGATTAGTGTTCAACACTACACTGGGAAGCAGGAAGCCAAAGGATTCCTTTAAGGTGATGCCTAAATAAATCCCACAGATCACAAATTAGGCTTGATAAAGTGCGATTAATGTTTtggggaagttttttttttaatatgattaatttaatttagtgctTTGGAGCAGAGCTTTGCAACCCTGTTCCACAGTCTTCTGTATTCTGTTAATCATTCTGTTATTCAGAATCActgaacaaagaaagaaagaacaaaaccaTGTGGGTGAGCCAGTGAAGACCTTTAAGTGTGAAACCATGTGGAATGAAAACTGTCTGATACAGGGACATCCAGGGCTGAACCTCCCTGTGTTACACTATGACACTGTGTGCTTGTTGAACACCTTTATGGTTACAAACTAGATTGCACTTAATGAACTGATACAATCATTGGAAATTCTCcatctccccccctcccctccattgGAGTTGGTGTACATATAGATAGAAGCCAGGAAGGGAATTGagagaaaataagtaatggGGATTTTGTATTTCAAGGAAGAACAACACAATCAAGACAATCATGATCCCATGAGACCAATTTTCCCAATTAATTACCACAATTTAGGTAAATATTTTGCACAAAATCTTAATTTTCTCATCTCCCTTGCTGGGCCCTGTATATATGTTCGAACTGGTTAATCTTTGCTTTTGATATCTTTGCAAATGACTGTAAATCTAGatgtatttaacatatttagttctgattatatacatataaagctATTACTGACCATGTAGAATTGTCAATTGTaattttttgcattaaaatatattgcattataa

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K21871 MPHOSPH8, MPP8; M-phase phosphoprotein 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88167 lncRNA upstream 273302 15918413 ~ 15918621 (+) True G70562
TU88084 lncRNA upstream 463006 15727434 ~ 15728917 (+) True G70496
TU87982 lncRNA upstream 666908 15522525 ~ 15525015 (+) True G70418
TU87979 lncRNA upstream 685875 15505814 ~ 15506048 (+) True G70415
TU87977 lncRNA upstream 691091 15500558 ~ 15500832 (+) True G70413
TU88264 lncRNA downstream 28970 16237110 ~ 16240338 (+) True G70637
TU88391 lncRNA downstream 282271 16490411 ~ 16491118 (+) True G70735
TU88448 lncRNA downstream 522738 16730878 ~ 16733637 (+) True G70776
TU88522 lncRNA downstream 820820 17028960 ~ 17097964 (+) True G70835
TU88535 lncRNA downstream 923923 17132063 ~ 17173062 (+) True G70846
AMCG00014514 mRNA upstream 2262 16164845 ~ 16189661 (+) True AMCG00014514
AMCG00014507 mRNA upstream 37267 16139473 ~ 16154656 (+) True AMCG00014507
AMCG00014508 mRNA upstream 52891 16129479 ~ 16139032 (+) True AMCG00014508
AMCG00014506 mRNA upstream 155163 16008399 ~ 16036760 (+) True AMCG00014506
AMCG00014502 mRNA upstream 237222 15947580 ~ 15954701 (+) True AMCG00014502
AMCG00014513 mRNA downstream 50101 16258241 ~ 16278438 (+) True AMCG00014513
AMCG00014516 mRNA downstream 137894 16346034 ~ 16370627 (+) True AMCG00014516
AMCG00014517 mRNA downstream 163613 16371753 ~ 16373757 (+) True AMCG00014517
AMCG00014524 mRNA downstream 229037 16437177 ~ 16438737 (+) True AMCG00014524
AMCG00014522 mRNA downstream 240523 16448663 ~ 16450651 (+) True AMCG00014522
TU88218 other upstream 59121 16129525 ~ 16132802 (+) False AMCG00014508
TU88057 other upstream 512135 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other upstream 512135 15675631 ~ 15679788 (+) False AMCG00014490
TU87778 other upstream 1835055 14336858 ~ 14356868 (+) False AMCG00014461
TU86705 other upstream 6183275 10003058 ~ 10008648 (+) True G69406
TU88385 other downstream 257541 16465681 ~ 16469113 (+) False AMCG00014525
TU88601 other downstream 1195371 17403511 ~ 17448453 (+) False AMCG00014553
TU88725 other downstream 2063714 18271854 ~ 18274360 (+) True G71004
TU89430 other downstream 6647202 22855342 ~ 22855646 (+) True G71525
TU90165 other downstream 11627363 27835503 ~ 27841871 (+) True AMCG00014704

Expression Profile