RNA id: AMCG00014516


Basic Information

Item Value
RNA id AMCG00014516
length 3124
RNA type mRNA
GC content 0.46
exon number 27
gene id AMCG00014516
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 16346034 ~ 16370627 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACCAAGGGGAAAGAGGGAAGGGCCAGCATGATGGAGCATGTCCACCTAGCggcggcggaggaggaggaggatttGTATTCTGGATACAACGACTACAATCCAACGTTTGACACTGAAGATCTGGAAAATGACACCGGGTTTCAACAGGCAGTTAAGACCAGTCATGGCAGAAGACCACCTATGACAGCTAAAATTCCTGGCACTGCTCTAGGTGCACGGCCCATGGGGACAACATTTGGAGCAAGGGTGCCTTTGGCCTCATCTCTGGGCAGACCAATGACAGGTGCTGTACAGGATGGAGTTTCGCGACCAATGACTGCAGTGAGAGCGGCTGGATATTCCTCCGCAATGACCAGAGGTTCTACATTTGATCCACTGGGTCAGTCCAAAGGACCTGCACCCCCTTTAGAAACCAAAAATGAAGACACTCCTGAAGAAAAGATCAAGAGCCTGGAAAAGCGAGTGAATGACTTGATTGAAGAAAGCTGCATGGCTCACAGCCACGGGGATCTTCAGCTGTCTCTAGAAAAGGCTAAAGAAGCTGGGAGAAAAGAGAGAGCGCTGGTGAGACAGCGGGAGCAGACTGGATCATCAGAACACGTCAATCTGGACATGACGTATTCCgttttatttaatttagcaaaCCAATATTCAAATAACGACATGTATCCAGAAGCTCTGAATACATACCAAGTGATTGtgaagaacaaaatgttcaataaTGCAGGGAGGTTAAAAGTGAACATGGCTAATATATTCTTCAAACAGAAGAATTACCACAAGGCAATCAAATTTTACCGTATGGCTTTAGACCAGATTTCTAATTCCCACAAGGAAATGCGtattaaaataatgcaaaatattggAGTGGTTTTCATAAAAATGGGCCAGTACTCCGATGCCATCACCTCATTCGAGCACATTATGACGGAAAGTCCAAATATAAAGACTGGCTTTAACCTGATCCTCTGCTACTATGCTATTGGAGATCGTGAGAGGATGAAGAAAGCTTTCCAGAAACTGATCTGTGTTCCTCTGGGTATTGATGAGGATGACAAATACATCCCCCCTAATGATGACCCACACACAAACCTTGTGTACGAGGCAATTAAGAATGACCAGCTTCgtcagatggagagagagagAAAGGCTCTGGCAGAGAAATTCATCATGACTTCAGCCAAGCTCATTGCCCCGGCGATTGAATCATCCTTCGCAGCAGGATTTGACTGGTGTGTAGAAATGGTGAAAAGCTCCCAGTATGTGGAGCTAGCAAATGACCTAGAAATTAACAAAGCCATTACATACTTGAGGCAGAAGGATTTCAATCAGGCTGTGGAAACGCTTAAAATGTTTGAGAAGAAAGACAGCCGGGTGAAAAGTGCTGCTGCCACCAATCTctcctttctttatttcctgGAAAAAGATTTTGATCAAGCAGACAGATATGCGGACCTGGCAATGACTGCGGACAGATACAACCCAGCTGCCCTGATCAACAAGGGGAACACTCTATTTGCGAAGAGAGACTACGAGAAGGCAGCAGAGTTTTACAAGGAAGCTCTGAGGAACGACTCCTCCTGCACTGAGGGTCTCTACAACTTAGGCCTGACCTACAAGAAGCTGAGCAGGCTAGAGGAGGCCCTCGACTGCTTCCTCAAGCTCCACGCCATCCTGAGGAACAGCGCCCAGGTCATGTACCAGCTGGCCAAATTGTATGAGATGCTGGGGGATCCACACCAGGCTATCGAGTGGCTCATGCAGCTGATCAGTGTGGCGCCCACCGACTCGCAGGCTCTGGCCAAGCTGGGGGAGCTGCACGACGATGAGGGAGACAAGTCCCAGGCCTTCCAGTACTACTATGAGTCCTTCAGATATTTCCCCTCAAACATCGATGTGATCGAGTGGCTGGGAGCCTACTACATCGATACACAGTTCTGTGAAAAAGCCATTCAGTACTTTGAAAGAGCTGCGCTCATTCAGCCAACTCAGGTGAAATGGCGATTAATGGTGGCCAGCTGCTACAGGAGAAGCGGAAACTACCAGAAGGCACTGGAGACCTACAAAGACATTCATCGCAAATTTCCAGAGAATGTAGAATGCCTGCGGTTCCTGGTTCGCCTCTGCATGGATATGGGTTTGAAGGAGGTTCAGGAATATGCAACCAAGCTGAAGAAAGTGGAGAAGATGAAGGAGATAAGAGAGCAGCGTGTGAAATCTGGCAGGGAGGGTAGTGCCCGTGGGCGCAGAGAGGGCAGTGCCAGCAGTGTCTTTCCTGAGAGTAGACACAGCCCTGTCCTGGAGCAGGTCAGAGACAGTGGGCACAGCAGCCATGGCACCAGTGCCAAGGGAGAGCGGTTGAGTGCCAAGCTGAAGTCCCTGCCGGGAGCCAACGAACCGTACGAGGCCAGCAACAACAAAGACATAGGCAAGTATGCCTCTTATGTCGACCCCCTCGGACCGCAGATAGAAAGACCAAAGACAGCTGCTAAGAAACGGGCTGAGGAAGACGATTTTGCTGATGAAGAGCTGGGAGATGACCTTCTGCCTGAATAGACTATCCTCGCCATTCAGCAGCTGCTGTTCACACGGCTCTTGTGTGAATATTCTGACTGTAGACGCTGAACACCACTCTGCTAGCCTTTGCTTTAGGTTTTGAAGTTTAAACCAATGTTATCTTGCTATTATCaactatattaatatatttatcacCACCATTATCCATGcagctgtaaaatacatttatttatttttgtaattcaatGCAGTAGCTCTTTAATAACTCAAAccgattttgtacattttatataaattatccTTATAGTTTAACTGCCTTCTTAATGGCACACATTTCCTATTGCAGACTCTTCAGAAAAGTTATGTTTTACACgtatgaatttaaaatacaccATTGCAAAATGTGACTAcccaatgtattttattagtatAAGCATATGTAAGGAATATAAACGTGTGTTagttgtgctttttattttggtctttaTGAAGACGTATGGTGGCAGGCATTATTAGATCAAAGCTTAGTATAGTAACAGGAGTATgttgctgtatttctttttaaatgtctgtacattttgtaattgtgaaacaaaatataaaa

Function

GO:

id name namespace
GO:0042073 intraciliary transport biological_process
GO:0045494 photoreceptor cell maintenance biological_process
GO:0042462 eye photoreceptor cell development biological_process
GO:0000132 establishment of mitotic spindle orientation biological_process
GO:0001539 cilium or flagellum-dependent cell motility biological_process
GO:0045880 positive regulation of smoothened signaling pathway biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0007369 gastrulation biological_process
GO:0060785 regulation of apoptosis involved in tissue homeostasis biological_process
GO:0071482 cellular response to light stimulus biological_process
GO:0072019 proximal convoluted tubule development biological_process
GO:0005930 axoneme cellular_component

KEGG:

id description
K16474 IFT88; intraflagellar transport protein 88

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88264 lncRNA upstream 105696 16237110 ~ 16240338 (+) True G70637
TU88167 lncRNA upstream 427413 15918413 ~ 15918621 (+) True G70562
TU88084 lncRNA upstream 617117 15727434 ~ 15728917 (+) True G70496
TU87982 lncRNA upstream 821019 15522525 ~ 15525015 (+) True G70418
TU87979 lncRNA upstream 839986 15505814 ~ 15506048 (+) True G70415
TU88391 lncRNA downstream 119784 16490411 ~ 16491118 (+) True G70735
TU88448 lncRNA downstream 360251 16730878 ~ 16733637 (+) True G70776
TU88522 lncRNA downstream 658333 17028960 ~ 17097964 (+) True G70835
TU88535 lncRNA downstream 761436 17132063 ~ 17173062 (+) True G70846
TU88555 lncRNA downstream 879692 17250319 ~ 17253671 (+) True G70865
AMCG00014513 mRNA upstream 67596 16258241 ~ 16278438 (+) True AMCG00014513
AMCG00014512 mRNA upstream 137894 16191923 ~ 16208140 (+) True AMCG00014512
AMCG00014514 mRNA upstream 156373 16164845 ~ 16189661 (+) True AMCG00014514
AMCG00014507 mRNA upstream 191378 16139473 ~ 16154656 (+) True AMCG00014507
AMCG00014508 mRNA upstream 207002 16129479 ~ 16139032 (+) True AMCG00014508
AMCG00014517 mRNA downstream 1126 16371753 ~ 16373757 (+) True AMCG00014517
AMCG00014524 mRNA downstream 66550 16437177 ~ 16438737 (+) True AMCG00014524
AMCG00014522 mRNA downstream 78036 16448663 ~ 16450651 (+) True AMCG00014522
AMCG00014525 mRNA downstream 94994 16465621 ~ 16469209 (+) True AMCG00014525
AMCG00014523 mRNA downstream 103167 16473794 ~ 16481556 (+) True AMCG00014523
TU88218 other upstream 213232 16129525 ~ 16132802 (+) False AMCG00014508
TU88057 other upstream 666246 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other upstream 666246 15675631 ~ 15679788 (+) False AMCG00014490
TU87778 other upstream 1989166 14336858 ~ 14356868 (+) False AMCG00014461
TU86705 other upstream 6337386 10003058 ~ 10008648 (+) True G69406
TU88385 other downstream 95054 16465681 ~ 16469113 (+) False AMCG00014525
TU88601 other downstream 1032884 17403511 ~ 17448453 (+) False AMCG00014553
TU88725 other downstream 1901227 18271854 ~ 18274360 (+) True G71004
TU89430 other downstream 6484715 22855342 ~ 22855646 (+) True G71525
TU90165 other downstream 11464876 27835503 ~ 27841871 (+) True AMCG00014704

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00074131 False 3386 mRNA 0.46 26 NC_007120.7 21365043 ~ 21382190 (-)
grasscarp (Ctenopharyngodon idella) CI01000009_09770695_09782443.mRNA True 2439 mRNA 0.46 23 CI01000009 9770695 ~ 9782536 (+)