RNA id: TU88385



Basic Information


Item Value
RNA id TU88385
length 569
RNA type TUCP
GC content 0.45
exon number 4
gene id AMCG00014525
representative False

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 16465621 ~ 16469209 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CCTCTTAGAAGTTGTAGTTGAAAGCGTGATCTTCACAAAATTGTGCAAGGAAGGACGTGTGTGAGCTCTATACTCTGGCAAAGGAGATATAAGACAGACAACCCAACCGGAAAATGGCCAGTTTACCAGCAGCGAGCTGCGAGGCCAGCAGCGGCCAGTGCGCCCAGGAGCCGCAGGACACGAAGCCCCTGAAGGCGTGCTGTGCGTGTCCGGAGACCAAGAAAGTCAGAGATGCCTGCATTATTGAGAAGGGCGAAGAGGGCTGCAGAGATCTGATCGAGGCTCACAAGGAGTGTATGAGGGCCCTGGGATTTAAAATCTAACCACATCTTAACAAAACGTAGTGGGACTGAGCATTTGTGtgTGTTCCTGGTGTCTGGTGACTGAAATGCTGTGGTGATCCTctgagctttatttatttaattgcaatggAATATTTGTGATGCTCATTTCTATCGACTCCAAagtgtatgtaaatgtttattctcTCCAAAACTGTGGTATTTCctaaaataatgagaaaatagtctataatttaataaaaaaaaatcctgaacaTTTTGGTTTCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU88264 lncRNA upstream 225343 16237110 ~ 16240338 (+) True G70637
TU88167 lncRNA upstream 547060 15918413 ~ 15918621 (+) True G70562
TU88084 lncRNA upstream 736764 15727434 ~ 15728917 (+) True G70496
TU87982 lncRNA upstream 940666 15522525 ~ 15525015 (+) True G70418
TU87979 lncRNA upstream 959633 15505814 ~ 15506048 (+) True G70415
TU88391 lncRNA downstream 21298 16490411 ~ 16491118 (+) True G70735
TU88448 lncRNA downstream 261765 16730878 ~ 16733637 (+) True G70776
TU88522 lncRNA downstream 559847 17028960 ~ 17097964 (+) True G70835
TU88535 lncRNA downstream 662950 17132063 ~ 17173062 (+) True G70846
TU88555 lncRNA downstream 781206 17250319 ~ 17253671 (+) True G70865
AMCG00014522 mRNA upstream 15030 16448663 ~ 16450651 (+) True AMCG00014522
AMCG00014524 mRNA upstream 26944 16437177 ~ 16438737 (+) True AMCG00014524
AMCG00014517 mRNA upstream 91924 16371753 ~ 16373757 (+) True AMCG00014517
AMCG00014516 mRNA upstream 95054 16346034 ~ 16370627 (+) True AMCG00014516
AMCG00014513 mRNA upstream 187243 16258241 ~ 16278438 (+) True AMCG00014513
AMCG00014523 mRNA downstream 4681 16473794 ~ 16481556 (+) True AMCG00014523
AMCG00014531 mRNA downstream 88451 16557564 ~ 16578157 (+) True AMCG00014531
AMCG00014535 mRNA downstream 114711 16583824 ~ 16611661 (+) True AMCG00014535
AMCG00014537 mRNA downstream 222899 16692012 ~ 16719737 (+) True AMCG00014537
AMCG00014538 mRNA downstream 253085 16722198 ~ 16731869 (+) True AMCG00014538
TU88218 other upstream 332879 16129525 ~ 16132802 (+) False AMCG00014508
TU88057 other upstream 785893 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other upstream 785893 15675631 ~ 15679788 (+) False AMCG00014490
TU87778 other upstream 2108813 14336858 ~ 14356868 (+) False AMCG00014461
TU86705 other upstream 6457033 10003058 ~ 10008648 (+) True G69406
TU88601 other downstream 934398 17403511 ~ 17448453 (+) False AMCG00014553
TU88725 other downstream 1802741 18271854 ~ 18274360 (+) True G71004
TU89430 other downstream 6386229 22855342 ~ 22855646 (+) True G71525
TU90165 other downstream 11366390 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 11399590 27868703 ~ 27879800 (+) True AMCG00014703

Expression Profile