RNA id: AMCG00014527


Basic Information

Item Value
RNA id AMCG00014527
length 6927
RNA type mRNA
GC content 0.46
exon number 6
gene id AMCG00014527
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 16411736 ~ 16420491 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgaaaaataatgccAGTGCTCTTGTGCAGGAGATGGCTGTCCGTGCCCTGAAGCAGACTGGGAGCAGGAACATCGAGGCAGCACTGGAGTACATCAGTAAAATGGGTTACCTGGACCCTCGCAACGAGCAGATTGTGCGCGTCATCAAGCAGACTTCGCCAGGAAAAGGGGGTGCACCAAGCACTGTGGACCACAGACCAGCATTAGAGGGAACAAGCGACGGCATGCCTCCCTATCATCAGATGGGAGGCCCACTCTACGAAGGAGCAAGCTATGGGCCCGaaagcacaaacacactggGGGAAATCCAGAGACCGTATATGGGTGCCCCTGTCTTGAACTACATGCTGCCCTCCCCTCCACAAGCCCCACCCATGGGCAATCCCCTGGGCAGGCCCCCAAGTATGGGCCCATACCCAGCACTCTCTACGCAGAGCCCCCCAGGGAATTCCATGTTTCCTCCCTGTGATCTCAAACACCAGCAGAAGTCATACCCGGGCAGCGTGGACCCGGCCATGATGAGCTACCCTGTTCCCAACCAGCCTCTGCAGCTCCAGGCACCACCAGCAGGGCCAAACAGCCCCCATTACGGCCGGTCACACATGATGGAGGCTGGATATGGTGTGCAAAGGAGCTCCTCCTTCCAGAACAAAATGCAGCAAGAGAATTATGTCAACCTGCAGGGCAAAGGAGCCCTTGGTCAAAATAGCAGCGGGTACCCCAACCTGTACCTCCACTCCCACCCAAGGCAGTCAAGTCCCACCTCTCACCAGGTGCACATGATCTCCCGACCCCAAGCAATGGGATCAGACTTCCCTGACGTTCCCCCCAGTCTGCTCACACCATCCAGAGCCAGCCTCAACCTGGACCTGTATGAGCACCACTGGGCAGCGCCCTCTCCTGGCCGCCACGACCCAATTCCCAATCCTGTGCCTGAGGGAGTGCCTAGGCAGTCACAGCAGGGGCCCTTCAGGGGAGAGGTACATGTCCCCAGCAGAACCAACTCTTTCAACAACCACCAGAAGGTCAACGTGACAGTCAGACAGAGTCTACCCAGCAGCAAGCAGGACCCTTCCCTTGGGCCTCCGAACACCATCACCGCAGTGACTTCTGCTCCCATCCAGCAACCTGTCAAGAGCATCCGGGTGATGAGGCCAGAGCCGAAGACCGCGGTAGGCCCCTGTCATCCCGGCTGGCTGGCTGCCCAGTCACAGGAGGCAGCTGAAGCTCATTGCTACACAGCGGGTGACAACTACAGCCTCGAGGCAGTCGACTATGGCACCCCAGAGCCAAGATGTCCCCCTCCACCATATCCCAAAACCTTGTTACTCCAGGGGGCTTCAGAGCAGCCGTCTCTAGAAGGAAATGGCCTATGTGGGGCTGCCGAGCTCAGCCCTCGTCCATTGCCGGGCTGCAGCAGTAAGGTGGAGGAAGCGAATGGCGGAGGGCTGCCCAACGACAAGGCCAAAATGGTTAAGGGTGAAAAGACTGTTAAAGACAAGAAGCAGATCCAGACATCACCGGTGCCAGTGAGAAAGAATGCCAAAGATGAGGAGAAGAGGGAGTCGCGAATCAAGAGCTACTCACCTTTTGCCTTCAAGTTCTACATGGAGCAGCATGTGGAAAACATCATGAAAACATACCAGCAGAAGCTGAACAGGAGAATGCAGCTTGAGCAAGAAATGTCCAAGGCTGGTCTGTCGGAGGCTGAACAGGAACAGATGAGGAAAATGCTGTACCAGAAAGAGTCCAACTACAACCGTCTGAAGCGCGCCAAGATGGACAAGTCCATGTTTGTCAAAATCAAAACCCTGGGAATTGGAGCATTTGGGGAGGTGTGCCTGACACGCAAAGTGGACACCAACGCGCTGTATGCTATGAAGACTCTGCGCAAGAAAGACGTGCTGAACAGGAACCAGGTGGCCCACGTCAAGGCAGAGAGGGACATCCTGGCCGAGGCCGACAACGAGTGGGTAGTGCGGCTCTACTACTCCTTCCAGGACCGGGacagtttgtattttgtcatggaTTACATCCCTGGGGGCGACATGATGAGCCTGCTGATCCGCATGGGTGTTTTTCCTGAGCACCTGGCCTGCTTCTACATTGCCGAGCTGACGTTGGCCATCGAGAGCGTGCACAAGATGGGTTTCATCCACCGCGACATCAAGCCCGACAACATCCTGATTGACCTGGATGGACACATCAAGCTCACCGACTTTGGCCTGTGCACTGGCTTCCGCTGGACACACAACTCCAAGTACTATCAAAAAGGGAGTCACATCAGGCAAGACAGCATGGAGCCCAGTGATTTCTGGGACGATGTGTCGAATTGTCGCTGTGGAGACCGGCTAATGACCCTGGAGCAGAGGGCAACCCGGCAGCACCAGCGATGTCTAGCTCATTCTCTGGTGGGAACCCCCAACTATATTGCTCCAGAGCTGTGTGATTGGTGGAGTGTTGGCGTGATCCTGTTCGAAATGCTGGTTGGGCAGCCTCCATTCTTGGCTTCAACTCCGGCAGAGACACAGTTAAAGGTGATAAACTGGGAGAACACGCTGCAGATCCCCCCCCAGGTGAAGCTGAGCCCTGAGGCGGTGGACATCATCGGCAGGCTGTGCTGCTCGGCCGAGGAGCGACTGGGGGGCAATGGGGCGGGCGAGATCAAGGCCCATTCGTTTTTCCAGAAGATGGACTTCTCCAGCAACCTGCGCACCCAACCGGCGCCCTACCTGCCCAAGATCAGCCACCCCATGGACACCTCCAACTTCGATCCCGTGGAGGAGGACGGGTTCAACGGTGCCTGGAGCGACAGTGGGGACAGTGCCAAGGCTTGGGACACACTGGGCTCCCTGCACGGCAAGCACCCCGAGCACGCCTTCTACGAGTTCACCTTCCGCCGGTTCTTTGACGACAACGGGTGCCCATTCCGCTACCCCAAGCCCCCGGAGCCCGCCCCCAGCAGCCCGGGACCAGAGGAGCAGGCTGAGGGCTGTGAACCTGTCTATGTTTAAAGAAGGCCTGAATGCAGGCTCCTCGTCAGCAGGCAGGCATCTGTCCGAACACGGAACAGAACATGTCGGGGTCAAAGAGTTCCCTGTGTCTCCTTCCCCTCATCCTGCGGTCGGCTGCAGCTCCTCAGAATGAGACAGTAAAGCAGCGCTGGGTCATCTGCAGGGCCTGGCTTGGTGTTTCTGCTCCTCTTCAGAATAAAGGATTCGCTTCATCCCAAGAGAGATCTtcagataaaataatagaaaaagcTTCTCGTCACTAGGTGGGGTGTAGAAGATTTCCCAACCTCCGGTTTGATAAAATGTTCAGATCTGAGATGCCAACATATCAATGATTTGagatttaaacaaaactttgtTTAGTTTGTGAAATCTCAACAATTGTGATGAAGCAGGACTTCAAAAATAACTGGGCAGCAGGATAGAATAGAATCTGAAGCCAGCACCCATGGCTCAGAGCAGATCAATAAAGGCAGTTGTGGACACGGGCAATTACCCCTTTTTCTTCTGGTTATATTTTAACTGGAAGACCCCTATCAAAGTGGGACCAAGCAATTCCAGTTCATAAGGGAGGGGTTGAAACGAAAACCAAGCACAGCCCTGATTCAACAGATAGGCGCATTGAAGCCATTCTGAAGTGAATTCCACCACAGCAGACTCGATGTCTCTTTTTGAGGTTGCAGGGGTTATTGTGGCAGGTGCCTGTTTTGCTGGTGCAAGAGTTGATCCTGCCTTGCAGCCCTGTGATTGTTCAGAATTGGTGAGGTTTTCTCACCAACTGGGTTCTCATCGAATCACACCATCTGTTCTGAAGGGGAAGATTGAATTAAAGTCAAATAAGCTACCATTATGCCTTATAATTCCCACCTTCAGTGATATTCACGGTATTGCAATTTTAAATACCAGCTTAgtgatttacaaaacattgtaaacCTATATATTTGCAGTCCTCTGTGTTTTCAGTTCCTGTTTTCAGTGTAttccttttctgtgtttgtcatCATTAGTTACTAGCTTGCagctgtttcattttaatgttttgtatttattttacatgtctgATTAACACTTAACTTATAAAGACCTTTTATATTATACAATGTGTAATGACATCTTTGTTTAGTATAGCTTTTTCTGTACATGGTAGTTTTAACATGAATAAGAATAATGTGTAAACTGTAGGTCTCTATATCATTAGCCACGGAGTGCTTCCTATAAAGTTGTGTCATTTGTAAATCACTGCTGGGTATTTCAAATGGCGTGTTGTGTAACGCATTCTTTCTTAAATACAATAAGAGTAGACAGAATGTGCAGAGGGCAGCCATTTGCATCCTTGCCAGTGGAGATTCCCCTGATGTGTAGGATGTGATTGTGCCAAAGCATTCTGTTGCTGTTCCTTTTGTTGTGTTCTCCAATGCATTGTTCGAACTGCCAGCACTTAACCAggaaacagtgtctgaatgtgAATGGACTTTGTGATCTCAGATGCTGTCGGTCTTCATTCACCTCACTAAGCACCTAAAAGCAAATGTTGATTAAGCAATTAGTTTCTTGTACATCCTTTTTTACCTCTTCAAAATGGAGCACCATAGAGTATaccaaaaaaaatgcattctcattaaagtttaattaacaTTCTCAACTCAATATAGTGAAAGGAAAGGTCAATAAACCTccattaagattaaaaaaaactaaacctatATTGGAGGTAAATAAGTGAAGTGCAAAACTGCAGGACTTTGTTGGGTGCTTTAAATCGATAactatttttgaatgtaattCTTTGAGTTTCACTGTCGTCTGTGTAACACAAGCTTATGTGATGAAAAAGCATAGCTTGACAGCATTACTGCCTTGGTACCGGAGAAAACAAATAGTCTGAGTAGAATATTTTAGAAAGTATACAATACTTGCTGAGGTGCTAAGATTGACAGCGTCTTTGAGACAAGTCTCCAGAAAGATACAAAcaatcaaaagtaaaataaaagtgcttgCAGATGAAGAGCATGTGATAATATGACAATgtgcaatacagaaaatatgatatatagTTTTCTACACACtacaattatctttaaaaaaagtataatgtttaaatatatatatattttatagtttgtatCTTTTGAATATAGTACATGACCTAATGCTGCTTTTCCCcattcttcttcatcttctttttcctcttcttatAAACAGAGTGGGTTTGATTGAAAGTGTGGAAAGTGTCACGTACTATGTGCCATCTAAGTGAATGTTGTGGGGGGGGATTTCTGCATGATCAGCGTTTGTGAATGTTGAATGAAAATCGTTTCTGTTCACTCACAGGCTGGTCCTGTGCAAGACAGGGAGAGAATTACTAAAACAACGACACAAAGGTACATGCAAACCTGGCAATTTGagaaaaaacagttttaaagtatagcagtgattttttttatattgttattacaTAATTGTGATGCACCTGGTTAATTTAGTCTTGCAAACACAAGTTAATATTGTAGAATATGATATTTTGTGCAGAGTAGGAAATATCCATGTATACCTACTCTGAGGTGCTAAGTGATTTATATGTTCCCCTTCATATAACTTCTAGTTTTGGCATGTAACTCCTTGCAAATCATTCATCCAGCCAAGACTTTGCAAGTGCTTGTTGTTTCCTATGGATTACTCATGTCTCAGAATGATCAGTAAAATTCCAGAGGGATTTCAGGTGTAAACAGGATAAATTAGTCCTCTCAGCCTGGCAGACACTCAGTGGTGTTGTATCTCTCTAGTGATCTTTGAAATAAAGACACTTTTCCATTACAAAAACATGTGATTAAAGGTGGGCAGCTACTTAATAAAGTCACTTAACGGATCACAGGTACTCATTTAATCTTGTTCCAGTTCTTAATATAGAAGAAGCAGGGTTACAAATAtaaaagaacacaaattaatatcCCCCATCCTGGCATTAAATTCCACACCAATGTCAGCTACTGCCAGATGAGTTGATCAAAATTACATGATAATTGAAATATAGTCACTGCTTTGTAAAGAATTGGAAAATAAACttctacaaaacaaattgtattgaGAACGCCAGGAGGCTGAAAACAGGCCCAGTGTAGGTCAGTCTTCCTCACTGTGCTGCCAGTTACACTTTGTATTCTTGGTGCTCTCTGCTGAGATGGAATTTACTTGCACTAAATAGTAGCTATATGAGGGGATCTTGTACCAATTCAGGTTCAGAATATATAGTGTACACAATCACAACAAACGTGAATTTGAAGAAATAATACTGCAAGACTGAAAGTAATCATATTGTGTGAGTGTGCCTGAGGGATGCCTTGGATTTTCCACATTGTGTTTTGAGAGTGCTGACTGACAATCTTTGACTGACTTAATCCCTATTTTAGATTTGAATTATATGACTTTCTTACCCTGTGTCGtatttttatttgggggggatACCTGTATTACCCCCCTTCATGTATAACACAATAATATTACtcgtaaaatatatttatacatagatatacatatttttttgtataatgtttaCTCTCTCTCATGTATTGTGTTTTAGATCCTTCATTAATCTGTATGTCTAGTTATTCTCACCACCcgtataaacacaaataaacatgaacaagAAACATGCAtcttcttttttacatttatgtatgaAGTGAGTATTTAAAACATCTGCTCTGACTGCCTTTCAtgtgtaaaaatataacaacatacaacaacttcagtattataatttttttacatttttatttttacctgtaACCCGTTAAGTGGTATGTATTTCTCAGGAACTCAATCCTCacactgttatttattattgtaattatcttTGCATTTGAAGGCTTGTCTTGGCGTAGTGTATCAGTGCAGTAAACATGCTACATAAAA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08791 LATS1_2, Wts; serine/threonine-protein kinase LATS1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88331 lncRNA downstream 42272 16366124 ~ 16369464 (-) True G70689
TU88319 lncRNA downstream 129837 16281685 ~ 16281899 (-) True G70679
TU88297 lncRNA downstream 197609 16212544 ~ 16214127 (-) True G70660
TU88073 lncRNA downstream 708422 15701495 ~ 15703314 (-) True G70491
TU88074 lncRNA downstream 709400 15700208 ~ 15702336 (-) False G70491
TU88386 lncRNA upstream 45288 16465779 ~ 16469228 (-) True G70731
TU88472 lncRNA upstream 301582 16722073 ~ 16723550 (-) False AMCG00014539
TU88566 lncRNA upstream 863828 17284319 ~ 17284576 (-) True G70876
TU88592 lncRNA upstream 928945 17349436 ~ 17350972 (-) True G70898
TU88625 lncRNA upstream 1026377 17446868 ~ 17448717 (-) False AMCG00014555
AMCG00014528 mRNA downstream 2448 16380894 ~ 16409288 (-) True AMCG00014528
AMCG00014518 mRNA downstream 34763 16375420 ~ 16376973 (-) True AMCG00014518
AMCG00014519 mRNA downstream 65381 16316534 ~ 16346355 (-) True AMCG00014519
AMCG00014520 mRNA downstream 102930 16308288 ~ 16308806 (-) True AMCG00014520
AMCG00014521 mRNA downstream 104263 16300633 ~ 16307473 (-) True AMCG00014521
AMCG00014530 mRNA upstream 4904 16425395 ~ 16431657 (-) True AMCG00014530
AMCG00014526 mRNA upstream 18804 16439295 ~ 16446968 (-) True AMCG00014526
AMCG00014529 mRNA upstream 31390 16451881 ~ 16457368 (-) True AMCG00014529
AMCG00014533 mRNA upstream 59396 16479887 ~ 16496581 (-) True AMCG00014533
AMCG00014532 mRNA upstream 76796 16497287 ~ 16504076 (-) True AMCG00014532
TU87063 other downstream 4749243 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 5613589 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 7094569 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 8027512 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 8253146 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 11909248 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 12968799 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 15842676 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 16176971 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 16176971 32597462 ~ 32619149 (-) False G73127

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00035201 False 3297 mRNA 0.58 8 NC_007131.7 1244123 ~ 1265562 (-)