RNA id: AMCG00014528


Basic Information

Item Value
RNA id AMCG00014528
length 4088
RNA type mRNA
GC content 0.52
exon number 23
gene id AMCG00014528
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 16380894 ~ 16409288 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTACTGCCAAGAGCCCATGCCAATGAACCCATTGGCCCAGAGTCCTGCTTTATCCCACAATGCAGCGCATGGCGCGTCATTGAAGAGAGACCATGATGGCGGCTGTTGGTGCACCAGAAGTGATTTCACAGCTGGAGAGCGCTGCCAAAGTTTTAATGGCACCGCCGTCTATGGTCAGTAATGAACAGCGACAGCATGCAGAACATATATTCCTCTCGTTTAGAAAGTCCAAGTCTCCTTTTGCTGTATGCAAACACATTTTAGAAACCAGTAAAGTGGACTATGTCCTCTTTCAAGCGGCCACGGCGATAATGGAGGCGGTGGTACGAGAGTGGATTCTTTTAGAGAAGAGTAGCATCGAATCACTGCGGACATTCCTCCTAACCTATGTCTTACAGAGGCCCAATCTTCAGAAGTATGTGAGAGAGCAGATTCTGCTGGCAGTAGCGGTCATTGTCAAGCGCGGGTCCTTAGACAAGTCTATTGACTGCAAGGGCATTTTCCATGAAGTCAGTCAGCTCATCAGCAGTGGAAACCCAACAGTGCAGACACTGGCCTGCTCAATTCTCACCGCGCTGCTTAGTGAGTTTTCCAGTTCCAGTAAAACGAGCAACATTGGGCTGAGTATGGAGTTCCATGGCAGCTGTAAGCGCTTGTTTCAGGAGGATGACCTGAGGCAGATCTTCGTGTTGACCGTGGAGGTGCTGCAGGAGTTCAGCCGCCGGGAGAACCTCAGCGCCCACATGTCGTCCGTGTTCCAGCGCTACCTCGCCCTGGCCAACCAGGTCCTCAGCTGGAACTTCCTGCCACCCAACCTGGGCCGGCATTATATTGCGATGTTTGAATCCTCCCAGAATGTGACACTGAAACCTACAGAGTCCTGGCGAGAGACCTTGCTGGACACCCGAGTGATGGACCTCTTTTTTAAAGTGCACAGGAAGATTCGGGAAGACTCAGACATGGCCCAGGACTCTCTGCAGTGTCTGGCACAGCTGGCCTCCATGCACGGCCCCATATTCCCAGATGAGACGGCACAGGTTAACTACCTGGCACACCTTGTGGAGGGACTACTCAGCATGATAAATGGGATTGAAATCGAAGATTCGGAAGCAGTCGGAATTTCCAATATCATCAGCAACCTGATCACCATGTTCCCTCGAAGCAACCTGACCGCTCTTCCCAATGAGCTCTTTACCTCCTTCGTCAACTGCCTGACTCACCTCACCTGCTCTTTCGGCCGGAGCGCCGCCTTGGAGGAAGTGGTAATCTCAAATGGCTGCTTGGGGGAATTGAGGGAAGCTCAGGAGGTGTCTTTGCAGCTGGACAAGGATGACATGGTGTACATGGAGGCCTATGACAAGCTCCTGGAGTCGTGGCTCACACTGGTGCAGGACGACAAGCACTTCCACAAGGGCTGCTTCATCCAGCCTGCCGTGCAGGTCTTCAACTCCTACATCCAGTGCCACCTCGCTGCCCCAGACGGCACACGAAACCTGACAGCCAATGGAGTTGCCTCTCATGACGAGGATGAAATCAATGAGCTGCAGGAAGACGACCGAGAATTGTTCTCTGACCAGCTAGCCAGTATAGGAATGCTGGGACGGATAGCCTCTGACCACTGCATCCCCCTCCTCACCAGTTTGGTAGAGGACCGGGTCACCAGGCTCCACGGCCAACTGCAGCGGCACCAGCAGCACCTGCTGGCATCCCCGGGGTCTGGCTCCGTCGACCGCAAGGTGCTGGACGACCTCTACGAAGACATTCACTGGCTTATCTTAGTCACAGGCTACCTCTTAGCAGATGACACTCAGGGAGAGACCCCCCTCATCCCCTCGGAGATAATGGAGTACTCGATCAAGCACTCGACGGAAGTGGACATCAACACCACTCTGCAGATCTTGGGATCTCCGGGAGAGAAGGCCTCATCCATTCCGGGCTGCAACCGGACGGATTCTGTGATCAGGTTACTGTCTGCTGTGTTGAGGGCTTCAGAAGTGGAGTCCCGGGCTACGAGAGCCAACCTCACAGAGCTGCTGAGCCCACAGATGGGAAAGGACATAGTGTGGTTCCTGAAGCGCTGGGCCAAGACATACCTCCTGGTGGACGAGAAGATGTACTCCCAGATAAGTATACCACTCAGCACAGCCTTTGGGGCTGATACCGAAGGTGCCCAGTGGATCGTGGGGTACCTGCTAGAAAAGGTGATCAACAACCTCTCGGTGTGGAGTTCAGAGCCAGAACTGGCCAACGACACTGTGGAGCTGCTGGTGACACTGGTGGAGCGAAGGGAAAGGGCCAACATTGTGATCCAGTGTGAGAACTGGTGGAACCTGGCAAAGCAGTTCGCCAGCCGGAGCCCGCCGCTGCACTTCCTGTCCAGCTCGGTCCAAAGGACGCTGATGAAGGCTCTGGTTTTAGGAGGCTTCGCTCACATGGACTCTGACACCAAACAGCAGTACTGGACAGAGGTGATTAGGGCCACTGTTTCTGTGCAGGTCCTGCAGCCCCTTCAGCAACGCTTCCTGAACGTCATCAACCAGGAGAACTTCCAGCAGATCTgccaggaggaggaggtgaagCAGGAGATCATCGCCACGCTGGAGGCCCTGTGCGGCATCGCCGAGGCCACGCAGATTGACAACGTGGTCATCCTCTTCAACTTCCTCATGGACTTCCTCAATAACTGCATCGGCCTCATGGAGGTCTACAAAAACACTCCCGAGACGGTCAACCTCATCATTGAGGTTTTCGTTGAAGTTGCGCACAAGCAGATCTGTTATCTGGGAGAGTCGAAGTCGATGAAGCTGTATGAAGCCTGCCTGACCCTGCTGCAGGTTTACTCTAAGAACAATCTGGGCCGCAAGAGAATGGACGTCACTGCGGAGGAGGACCAGTACCAGGACCTGCTGCTCATCATGGAGCTGCTCACCAACCTGCTGTCCAAGGAATTCATTGACTTCAGCGACACTGATGAGGTTTTCCGAGGACAGGAGCAGGGACAGGCGGCCAACCGGTCAGTCTCTGCTGCAGATGTTGTCCTTTACGGAGTCAATATAGTGCTGCCACTCATGTCACAAGACCTGCTGAAATTTCCCTCACTTTGTAACCAGTACTATAAGCTCATTACCTTCATCTGTGAAATTTTCCCAGAGAAAATACCTCAGCTTCCTGAAGAGCTTTTCAAGAGCTTAATGTTCTCCCTGGAGCTTGGCATGACTTCGATGAGCTCAGAACTGGTCTTCGACATGCTAGTGCTGCAGAAACACAACACTGAGATGACTGTAGCGGCCGGAGAAGCTCTCTACACACTAGTTTGTTTGCATCAGGCGGAGTACTCAGAGCTGGTGGAGTCGCTTCTCTCTAGCCAGCAGGACGCGGTCATATACCAGCGGCTAGCAGACGCCTTCAACAAGCTCACCGCCAGCAGCACCCCCCCTACCATGGACCGTAAGCAGAAAGTGGCCTTCTTGAAGAGCCTGGAGGAGTTTGTGGCCAATGTAGGGGGTCTGCTGTGCGTCAAATAACCATGGGCCCCCAGAACCACCACCGCCTCGCCAAACATTGGTTAAAATTGCACTGTCTGACAAAAGACTGctggagccctcacaatttcgTAGTTTTCTTTCCAGGTGGTGCTCATCATCTGAAGCAGTCTGTGGTGCAGCATGGTTGAAGTAAGAGGGGCAGAGAGTAAAACAATTAGCATTTGCcgcctgttttttttatttttatttttttaaatcaattcagtTATTGTTTACTTTGCCAGTGGACGGTTTTAGTAAATACAGAGCGTGTGCAGAGGGGCAGGAGAGGTGAGGAATCCCCGTAGAGTGcctttcattgttgttgtttttttttgttgttttttttggaacCAGCCATTTTTGTGGCCAGATGAAGCTTGTCTTAAGAAAGCGAGCCCGCGCTTTCAGACCTGCACCGAGACATTGCAGACAAGTACAAAGGTGTATACGCCACGGCCCTGCCCAGcctctctccacctcctcctgATTTAGGGATCTGGGTAGTTTGGGACCGTGCATTGATGGATGAAAAAccaaatcgttttttttttttttttgtt

Function

GO: NA

KEGG:

id description
K25203 XPO4; exportin-4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88331 lncRNA downstream 11430 16366124 ~ 16369464 (-) True G70689
TU88319 lncRNA downstream 98995 16281685 ~ 16281899 (-) True G70679
TU88297 lncRNA downstream 166767 16212544 ~ 16214127 (-) True G70660
TU88073 lncRNA downstream 677580 15701495 ~ 15703314 (-) True G70491
TU88074 lncRNA downstream 678558 15700208 ~ 15702336 (-) False G70491
TU88386 lncRNA upstream 56491 16465779 ~ 16469228 (-) True G70731
TU88472 lncRNA upstream 312785 16722073 ~ 16723550 (-) False AMCG00014539
TU88566 lncRNA upstream 875031 17284319 ~ 17284576 (-) True G70876
TU88592 lncRNA upstream 940148 17349436 ~ 17350972 (-) True G70898
TU88625 lncRNA upstream 1037580 17446868 ~ 17448717 (-) False AMCG00014555
AMCG00014518 mRNA downstream 3921 16375420 ~ 16376973 (-) True AMCG00014518
AMCG00014519 mRNA downstream 34539 16316534 ~ 16346355 (-) True AMCG00014519
AMCG00014520 mRNA downstream 72088 16308288 ~ 16308806 (-) True AMCG00014520
AMCG00014521 mRNA downstream 73421 16300633 ~ 16307473 (-) True AMCG00014521
AMCG00014515 mRNA downstream 130118 16231565 ~ 16250776 (-) True AMCG00014515
AMCG00014527 mRNA upstream 2448 16411736 ~ 16420491 (-) True AMCG00014527
AMCG00014530 mRNA upstream 16107 16425395 ~ 16431657 (-) True AMCG00014530
AMCG00014526 mRNA upstream 30007 16439295 ~ 16446968 (-) True AMCG00014526
AMCG00014529 mRNA upstream 42593 16451881 ~ 16457368 (-) True AMCG00014529
AMCG00014533 mRNA upstream 70599 16479887 ~ 16496581 (-) True AMCG00014533
TU87063 other downstream 4718401 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 5582747 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 7063727 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 7996670 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 8222304 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 11920451 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 12980002 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 15853879 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 16188174 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 16188174 32597462 ~ 32619149 (-) False G73127

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00072991 False 4519 mRNA 0.51 23 NC_007120.7 21306902 ~ 21357841 (+)
grasscarp (Ctenopharyngodon idella) CI01000009_09792753_09812884.mRNA True 4319 mRNA 0.50 21 CI01000009 9792049 ~ 9813334 (-)