RNA id: AMCG00014535


Basic Information

Item Value
RNA id AMCG00014535
length 3290
RNA type mRNA
GC content 0.46
exon number 8
gene id AMCG00014535
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 16583824 ~ 16611661 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGTGACAGACGGAGATCTGCAGCAGCTCTCAGCTCCAGAGCGCACGCCTTCTCAGTGGAAGCGTTGATTGGgacaaacaagaagagaaaGCTGAGGGAGTGGGAGGAAAAGGACTTGGACTTGTCCATGGAGAGTCTCAGCCCCAATGGACAGCTAGGAGACGGGGAGGACCCGGCTCACTGCCTGGATATCAACCCCGATTCAGAGGCCAGCCCGGGATCCGACAGCGAAGGCCTGGCAGAGCGGACGTCGTGCTCCTTCGGCTCCCACTCAGACCTGGCCCACACGCCCTGCGACGCGTCCCCCCCGTCCTCCATGGAGGAGATCCAGGTGGAGCTGCAGTGCGCGGACCTGTGGAAGAGGTTCCATGATATTGGCACGGAAATGATCATCACTAAAGCTGGCAGGAGGATGTTTCCAGCCATGAGAGTAAAAATCCTGGGCTTGGATCCCCATCAGCAGTATTACATCGCCATGGATATAGTGCCAGTGGACAACAAGAGATATAGGTACGTGTATCACAGCTCCAAGTGGATGGTAGCAGGGAACGCCGACTCCCCGGTGCCCCCGCGAGTCTACATCCACCCGGACTCCCTGGCCTCTGGAGACACATGGATGAGGCAGGTAGTGAGCTTTGACAAACTGAAGCTCACCAACAATGAGCTGGACGATCAGGGTCATATCATTCTTCACTCCATGCACAAGTACCAGCCCCGTGTGCATGTGATTCGCAAGGACTTCAGCAGCGACCTCTCCCCTACCAAGCCTGTCCCCACTGGAGAGGGAGTGAAGACATTCAGCTTCCCTGAGACGGTTTTCACAACCGTCACTGCCTACCAGAACCAGCAGATCACTCGACTAAAAATTGACAGAAACCCTTTTGCCAAAGGATTCAGGGACTCAGGGAGGAACAGAACTGGTCTGGAGGCCATAATGGAAACTTACGCTTTCTGGAGACCACCAGTACGGACCCTTACATTTGAGGATTTCACCACCATGCAGAAGCAGCAAGGAGGAAGTACGGGCACGTCTCCAACCACATCCAGCACTGGGACTCCATCGCCCTCGGCCTCCTCtcaccttctctctccctcctgctccCCCCCGACCTTCCACCTGGCACCCAACACCTTCAACGTGGGCTGCCGGGAGAACCAGCTGTGCAACCTCAATCTCTCAGAGTACCCTGCCTGTGCCAGGAGCAACATGGCAGCCCTGCAGGGCTACACCGGCCTGGGTGAAGGCTCATACGGGAGGCTGCAGACTGGAGGGAGCACTGCTGGCCAGCCCTCTGAATCCTTCATGCCCCAGAGGACTTCATCTTTAATCACTGGAATGCAGGCCAATCCAGCTTCCCTGCCCGGCAACAACAAGATGGACACCTACGGCGGCCAGCTGGGTTCTTTCCCCACCTCCCAGCTTCAGTATGTGATGCAGGCAGGAAGTTCcgcctccagctcctcctcttcccaCATGTTCAGTGGAAGTCACATGCAACAGGGATCTTACAATGCCTTCTCCCTTCACAATCCATACAACCTCTATGGATACAATTTCCCTGCCTCCTCGAGACTGGCCACAAGCCCAGAAAAACTGACAGCTTCCCAGAGTAGTCTGCTCTGTTCGTCCTCACCTAATGGCCCCTTCGGAGACAGGCAGTACCTGTCAAATGGCATGGATGGGATGCACATGATTGGCAATCCGTCCCCTGCCCAGCAGACAGCCAATACCTGTGATAGTCGCCAGTATGCAGCTATGCCTGGTTCCTCCTCACAAATGTCAGTGCACATGGTGTAAACTGGATTATACTGCAGCAATTTgacttgtcttgtttttttccccccatttttcATCTTGTAAACCTTGTAATCAAATGAAGGAAATGTGTCATTGAAATATACAACACGTTattggaaatggaaaaggtCTAAACCTTTTCAAGGAACTTTCTCAAAATATGAGCGTTTGAAtgaattaaaagaagaaatcaaagtgttaatttaatatctctgttttaaaaaaaaaaaaaaattggaaagaAGTAAAATGCTGTACTGCTCATCAGCAGTCCACACTGACGTGTACTTTCATTTTTCTACCTTACCTGGAAACACTGAAGGCAGGAGCACTTCCTCCACTTGAAATGTTTCATGAAGAAGGAAGGAACACAAATCATTTAAGGGAGAAAGCAAACAATTTTGGTGCAATAGTGAAAAAAGAACTGCTGAAACTCACCTTGGTTTCAGTTATATTAAACCTTATCTAAAACATTATGTGAACAGTTTCCCTGAGACTCCAGTCCTAAGAACTAAATGGACACTTGACTCTTAAGACGCTCTCAAAGGAAACACGCTAATCATACAAGTTTGGACaaagttctttattttagaCAAACATAAGCTGAGTATTCTTGCTTAGAGACTGAAAGAGGCCTACAGCCTAGGAGAAAACCCTTCTATTAAAAGTGGAAAATACTGTTCATTGACTAATTCAGCGGAAGAGGATGGGAGTGTTCAAAAGCACACGAAGGGGATTATTTGAGACCTgcttaaaaacattgaaaataacctCTAGGACTTTCAGTGCTCTGACTAATTCATCACAGGCTCTGACCTCCATCTTCCCAATACTCCCTTCACCATTTGCATTGTTGaggtgttaaaaaatatatcgtGGTGAGAGCAAAAGGCTTTAAGTGTGCAAATACAAAGTAATAggaaaaataagtattaaaatatgtgttGATGTGTTGAAGATAACTATATTTATGTGCCTAgcattaatacaattacaatgccCCAAGAAGGCCAGTAAGAGGAATGTACAAAAAGACACAATAAAGAGTGAACGAatgaaagggaaagagaaacGGGGTGTTCAATAAAAGGCCGATTGAAGAATCTGTAAATAGAAGTGCAAAGCACAAAAAAGTTCAATAAACATTTACgttcatttacatttgtttcttgGTCTCCATATTGCTTTGGGACAGAGCAGTATCACATAAGTCACAAAAGGCGAATATTTAAACGTACATCTGTGTAAAACATTGGAAACAACAGATTCCTAGAAGATTGGCTTTAAACTGATAAGGACCTGTAATATTAATCCGATGGGAAAGTAATAATGTTAAAGATTAGTTCTGTACTCCATATTTTGGAAATGAAATCATATTGATCTTTAATCAAGATAGCGATGTTCATACAGCAGGTCTACAGTGTTGTTTATGGAGCCTACAGCAGGAATGTTAGGAATgcttattttaaagcagaataGCATTGTTTCAG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K10182 TBX15, TBX14; T-box protein 15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88391 lncRNA upstream 92706 16490411 ~ 16491118 (+) True G70735
TU88264 lncRNA upstream 343486 16237110 ~ 16240338 (+) True G70637
TU88167 lncRNA upstream 665203 15918413 ~ 15918621 (+) True G70562
TU88084 lncRNA upstream 854907 15727434 ~ 15728917 (+) True G70496
TU87982 lncRNA upstream 1058809 15522525 ~ 15525015 (+) True G70418
TU88448 lncRNA downstream 119217 16730878 ~ 16733637 (+) True G70776
TU88522 lncRNA downstream 417299 17028960 ~ 17097964 (+) True G70835
TU88535 lncRNA downstream 520402 17132063 ~ 17173062 (+) True G70846
TU88555 lncRNA downstream 638658 17250319 ~ 17253671 (+) True G70865
TU88575 lncRNA downstream 704592 17316253 ~ 17317556 (+) True G70883
AMCG00014531 mRNA upstream 5667 16557564 ~ 16578157 (+) True AMCG00014531
AMCG00014523 mRNA upstream 102268 16473794 ~ 16481556 (+) True AMCG00014523
AMCG00014525 mRNA upstream 114615 16465621 ~ 16469209 (+) True AMCG00014525
AMCG00014522 mRNA upstream 133173 16448663 ~ 16450651 (+) True AMCG00014522
AMCG00014524 mRNA upstream 145087 16437177 ~ 16438737 (+) True AMCG00014524
AMCG00014537 mRNA downstream 80351 16692012 ~ 16719737 (+) True AMCG00014537
AMCG00014538 mRNA downstream 110537 16722198 ~ 16731869 (+) True AMCG00014538
AMCG00014536 mRNA downstream 125822 16737483 ~ 16765552 (+) True AMCG00014536
AMCG00014552 mRNA downstream 717252 17328913 ~ 17332815 (+) True AMCG00014552
AMCG00014553 mRNA downstream 753137 17364798 ~ 17431231 (+) False AMCG00014553
TU88385 other upstream 114711 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 451022 16129525 ~ 16132802 (+) False AMCG00014508
TU88057 other upstream 904036 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other upstream 904036 15675631 ~ 15679788 (+) False AMCG00014490
TU87778 other upstream 2226956 14336858 ~ 14356868 (+) False AMCG00014461
TU88601 other downstream 791850 17403511 ~ 17448453 (+) False AMCG00014553
TU88725 other downstream 1660193 18271854 ~ 18274360 (+) True G71004
TU89430 other downstream 6243681 22855342 ~ 22855646 (+) True G71525
TU90165 other downstream 11223842 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 11257042 27868703 ~ 27879800 (+) True AMCG00014703

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00074112 False 6674 mRNA 0.41 8 NC_007120.7 21030930 ~ 21067673 (-)
grasscarp (Ctenopharyngodon idella) CI01000009_09967529_09989449.mRNA True 2356 mRNA 0.55 10 CI01000009 9967384 ~ 9989467 (+)