RNA id: AMCG00014536


Basic Information

Item Value
RNA id AMCG00014536
length 5761
RNA type mRNA
GC content 0.40
exon number 15
gene id AMCG00014536
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 16737483 ~ 16765552 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTGTTGCGGACACCGAAACCACTGGTATTCTCCCTCGatttaaTGCAGATGCAGCACTTCGGAAACGCACGAAACATCCCGGAAACGACCGAAGTAGGACACCCATTGTGGATTTGAATGCGGCTGTGTCCCATGAACACGCACTGTGCAATGCCTCGGAAGTGATGAATAGATTTCTGTTTGATGTGAATCAGCTGACCGGGAACACCGCAGCGGGCAGGCGGTGGCGAAACATTAAGTGTGTGAAGTGTTGGCCCGGCCTTATGGATCCTCTGGGAGCGCGCTCGCAGTTTGTTGATGCCCTGACGCTGCCCAGTTGGGAGCTGTCCCAGAATGGGGAGAATACGGCAGAATCCTGTGTGACTGACTCTCACAGCAGCCAGGACAGGGATGTCACTTCACCTTTTCCATTCAGAGAAGACCTTAACAGAAAGATTGTGCTCTACACTGGGAATGTGGCTCTCCTGAACTGCACAGCGATTGTCAACACAAGCAATGAAACGCTCATGGATAAAAATCCCATTTCTGACAGCATTCACAGACATGCAGGACCGGAGCTCAGAGATGAGCTGATCAAACTTAAAGGCTGCCGAACAGGTGAAGCTAAGATGACCAAGGGCTTTAACCTGGCGGCAAGGTTCATCATTCACACTGTTGGACCAAAATACAAAGCCAAGTACAGGACAGCGGCCGAGAGCTCGCTCTACAGCTGCTACAGGAATGTGCTGCAGTTGGCCAAGGAGCAGGGTATGGCATCTGTGGCATTTTGTGTCATTAACACATCGAAGAGAGGGTACCCCCTTGAAGATGCCACACACATAGCGTTCAGAACGGTCCGAAGATTTCTGGAGAACCATGGAGAAAGCATTGAGACTGTGGTTTTTGTTGTGACTGATGTAGAAGAGCCAGTCTACCAGAAGCTGCTGCCACTGTATTTTCCGCGGTCAGTGGAAGAAGAGCACAGAAGCCTCCCTCTGCTCCCACCCGACATCGGAAACTCTGAAGGAGAGCCCGTGGTACCAGAGAGGCAGATACGCATTGCGGAGAAGCCAGGCGTCCCTGAAGAGGATTCAGAGGAGGAGACTCTGGACAAGGACCTGTCTTTTGTGGGCTCTCATGCCTTCGCACGAATGGAGGGAGATGTTGACAAGCAGAGGAAGCTCATTTTGCAAGGCCAGATGTCAGAGGCTGCTCTGCAGAAACAGCACCAGCGCAACTATACCAGATGGTTATGTAGAGCGAGAGCAGAAGACCTGTCAGACATTGCTGCCTTAAAGGCATTGTATCAAACGGGGGTGGATATCTGTGGAAGAACAGTTATGGTCATCGTTGGAAGAAATATTCCTGTAACACTAATTGATATGGAAAAGGCTCTGTTGTACTTTATCCATGTGATGGACCACATTGTAGTGAAGGAGTACGTGATGGTGTATTTCCACACACTGACGGGCGAACACAATCATCTGGACTCGGAATTCCTGAAGAAGCTCTATGACATTGTGGATGCCAAACTCCACTTAATGGTTTCAACCTGGTTTTTTACTACTTTCAACGTCTCTGGGCTGAAGGACAAAGTTCACCACGTGGACACCCTGCAGCAGCTGTTCACCTGTGTGGTGCCTGAGCAAATCGATATTCCCCCTTTCGTGCTTGAGTATGATGCCCGGGTGAATGGGCCTTACCATCCCTCCTATTCCTCTGGTCTCTGAAGAACATGGAAGGCTTCTGCATTCAGTGGAAAACCTCTCTCCTGTGACTGAAGGCCCATGATCCGCATTCTCGGATTAGAGAACTTTGCAATGGTCCTATATTCCTTTGTAATTGATTTACAAAGTAATTTGAAGTTGCTAAGCAATCCCAAAGGTGTGTATTCACACCTTGAGCCATAATTTCAGCATCCACAATGCGTGTTAGTTCAGGGAAGAACCACTGATAGGTCTTAACTTTCAGATTGAATCAGTATTTTCGACACCATGCACTTGCAAAGCCTTTCTCTATGCAAAACAGGTAGTATATTTGCTCTCTAACAGTTTGACACTGTAACTATTGAAGGCTCCATCTTTTCCGAGGGATCCTTTCTGCTTTTATAGCACATCTCTCTTGAAAAAGAGACATATTGGACAGCAATCAGTCACTCTTATTTCACTAACTGCATGCATCTGTCAGCTTTCTACCTGGTTTACATATGAAGGTTTGTTCCTTATCTTTGAAGGCGATACGAAGGTAATAACATCCAGTGTATTTAGGCTTGTTCTCATTGTATTATCAGCCATGTGAAGAATAGGATGTATATGGGAGCCTAGaagtaaaaatacagtttaatgtgAAAGGTGAGACCGATAAATATCCACACTTCCAGAAGtgaggtttcttttttcttttcttttttaagaaatggTATGTGTGTATTATGTGGGAACAGCAAAACAGGATAAATTACAAAAGCCTTATGTCCCACAGTTAGTGGTTATAGTCTTTCTTCCTGGGTATCTCTTCCACCTTCGCATGTGTTATAAAGGGGTAAAACATTTGGATATGCTTACCATTGAAAACTAAGGATAATCAAAAAATGCAGCCTTAATACACATTTGCTGTAGAAGCATTcggttattttttcattttagatttacttgttttattgcCTTCCCAGTAGAGGTAGTCCAAACTGCTGTACTGTTTTCTCTGGAGAATTAGTTCAATGACAGCTGTATATCaaatgtttgtgttcattttactAATTATTATGCAAATGAGCAACAAGTTTTCTGTACATGGCATACGTTTATCTGGCTGTGTATATCAGTATGGATTCGTGGCTGTCCATCTGGACTTTCTTTGAACAGCTGTAAGAGCAGTGTGTGGCAGATGTCTGATATTCAGTGTGGTTGCAAACAGGCTAATATTCCTTTTCGGGGTCGGGGGTAGGGGCGGTGATTCATTTTAGGAATACATGAAACTGTTATCGGCAAAGTTCTGAACATTAATGACTCTAATCAGGATGGATTATGGGCCTATTTTGGTATATTGTTATTCTTGCCGTCTTATACAGAACTCACCCTTATTTTTCCTTTGCATGTCCACTACACTCTGCGATTTTGTCTGGTCTTGCACATGCTCCACAAGGGCAGTACTCTGAATATTCAATCTGCATGAATTCCTGAATTTAAATTCGGCTTGCATGTACGCAGCTTGTGCAGATTACTATATTCATAATACTGATGTATTTTACATGTCAcatgtgtaaatgtaattgagatttaaagaaaaataaatctattgaCCAATGTATGAATTGATCCTGACCCTAAAAGGAGAGATTTGTAATGACTCTCTCTCGTTGgttcagaaattacattttaagtctATAAAGGGTCTTTTATAAGACTTTCAAAAGAACGCATATACACTGTACTAGTAATAAAAATGGTGGCGAAAGCACTTGCAGTCTTGAGATCATTAAATATTGTGAGCATAATGGTTGACCTACATAAAACGGaataatcaaaatgcatttttaaagctgAGCAATAGACATTATCAGGTGTGTTTGGTTGAATTTGCAGCCTGCAAAAACACTACCACTCTATAGTATGAGAATTTGTGACTTAAAGATGTACTCTGGAAGTCTGTTATATGAACAACAGCAGcactatttaatttgtaatttgtgttctcTGAATAGGGACATCTTCCCTATGACAGTATGTTATGTATTTAAGATGGTTACTTGGATTGTTTGCTGACATTTTTTAGTGTGTTAATGACAGCTGgttactgttttgtatttttaagtccATTTATTGATACAGTATTTGATGCGTGTAAAAGTGGCCATAATATATTCTGCTAGTTTGGTGCATATGTAGTATTCATCATTATGCAGAGCTTAGAGTGCCAATTCTGATTGTAGAAAACCCTTTACATAGCCCATTGTGGCATCAGTGTTTTATCATGGTTGGTTGACATCATCCTTTTAATGAATGTAAGAAAAAGTATATTGGTGGAATTTTATTCAgccattcagattttttttttctctccattccaTATTGCAGATTGTTTAGTTTGGACAAACAAGGAAGATGTTGGCAAAATTGTGAAAATACACTAAAGCATCGCTTCCCAGCTCTGCACCCTCACCATTAACCCACAATCGCATGTTTCTAtccagaaatgtaatattttcaacTCGATGCTTCCGTATTTATATTCGTACTTCTTGTGGAAGTCTTtctatatatgtaattaaagtaCCTGGCAAACTGGATTACAGTGTGGAGTTTCTCTTTACATTTGATACAAGTCAAGGACATCAAATGTGCCAAATCTGTTTTAGCAATCCATATGCTTGGATTGGAAGTGTGATGGGTATGATGTGATTTGATGGTTTATTTTCCTGCCTCAAAAGCCTTATTGATATCCATAGGCGTTGGTCAAAGGATGAACATTGATAACTAAGCCATACTCCTTTTTATGAAGTATCGGGtacatgttatattttattttcttgaattcACCACACAgttgcagtacagcacagtacagcatgCTTTTCTACAGCACAGAAAAGATAATGAAGCTCAAATGCTAGTGTTAGTTAGcttgaaaaaaatatagaaattgGATATTGAATTGCAACTCAATTTCATATTGCAATACGGATTAAGAAAATGCATGGTGCCATAGGCAGAGCCTCTCGGTACAGCCAGCCTGTCATGACATTGCAGTGAGTTCACATTCCTGTATTGCAGAACAATCTCGTCATTCAATGTCTTTGACATTGTATTTATAGATGGAGAGCCATAAAGTAAAGTGTATTTGGaaacaaattattgttattggcgatctctttacattttcattaagagGATTTGATTATGGCACTCATTTTTAGAAACATCTGGGAAACATCTCAGCCCTCCAAATCCTTGGTTTTCTTTACTGAGTTCTCTGAAGTTAGCTGttctatgcatttaaaaaactaaataaaaaataaataaataagtgagtGTGTGAGGGGGTCCTTCCATTCTTCTCTCAGGTTCTGTATTCTAGAATGGGGGAAAGGCATTGAATATGTAATCAGAACATACACCATTTTTAGAATTGTTCATGTCCTTTCTATACTACACTTAACTACTCAACTTCTGTTTCTAACtagatttttttcattaaagctGAGTAAATAGTTTTaactattttcagtttaattgcaGTGAAGTTACCTGGATATAATTTCTCACCTATTTGAATACaacaaagcaatttttttttttttgtattctagttttttaaataaataaacggaATGTGGCATTGTAAgaagtttttttagttttttgtaataCTTGAAACTTGGGCAGGACTTTGGGGTCTGGCTAGAAACCTGTTCTAGACATCTGTGAACTTCTGTCAAAATTGTCAGCTGACTGCTTTTATTGTTAGCCAGATGAAGCCAGTTATTTTCTACTGTATCTTCACCTGCTGATTTGTCATAACTAGAGCTGCATTTTTCGGTGTCCCCTTACAAATTGTCTCTTGGACTGAAATGTGTGCCATCTGTGCCATAACCTCAGGACAGTGTGTCCCTGGTCAAGCACAGAAAGATGtaaaaccatttttttattctaaatgtattgcaaatgaAATTAagtatgttaattaattaattgcatttattattatttgaattattttgtgcagATGTGAttattggaaagaaaaaaataggtgTGTAATTTTGTGAAATCTGAAATGCTG

Function

GO: NA

KEGG:

id description
K24997 GDAP2; ganglioside-induced differentiation-associated protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88448 lncRNA upstream 3846 16730878 ~ 16733637 (+) True G70776
TU88391 lncRNA upstream 246365 16490411 ~ 16491118 (+) True G70735
TU88264 lncRNA upstream 497145 16237110 ~ 16240338 (+) True G70637
TU88167 lncRNA upstream 818862 15918413 ~ 15918621 (+) True G70562
TU88084 lncRNA upstream 1008566 15727434 ~ 15728917 (+) True G70496
TU88522 lncRNA downstream 263408 17028960 ~ 17097964 (+) True G70835
TU88535 lncRNA downstream 366511 17132063 ~ 17173062 (+) True G70846
TU88555 lncRNA downstream 484767 17250319 ~ 17253671 (+) True G70865
TU88575 lncRNA downstream 550701 17316253 ~ 17317556 (+) True G70883
TU88591 lncRNA downstream 583884 17349436 ~ 17350952 (+) True G70897
AMCG00014538 mRNA upstream 5614 16722198 ~ 16731869 (+) True AMCG00014538
AMCG00014537 mRNA upstream 17746 16692012 ~ 16719737 (+) True AMCG00014537
AMCG00014535 mRNA upstream 125822 16583824 ~ 16611661 (+) True AMCG00014535
AMCG00014531 mRNA upstream 159326 16557564 ~ 16578157 (+) True AMCG00014531
AMCG00014523 mRNA upstream 255927 16473794 ~ 16481556 (+) True AMCG00014523
AMCG00014552 mRNA downstream 563361 17328913 ~ 17332815 (+) True AMCG00014552
AMCG00014553 mRNA downstream 599246 17364798 ~ 17431231 (+) False AMCG00014553
AMCG00014560 mRNA downstream 1014013 17779565 ~ 17780081 (+) True AMCG00014560
AMCG00014565 mRNA downstream 1184008 17949560 ~ 18029896 (+) True AMCG00014565
AMCG00014564 mRNA downstream 1272556 18038108 ~ 18067182 (+) True AMCG00014564
TU88385 other upstream 268370 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 604681 16129525 ~ 16132802 (+) False AMCG00014508
TU88057 other upstream 1057695 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other upstream 1057695 15675631 ~ 15679788 (+) False AMCG00014490
TU87778 other upstream 2380615 14336858 ~ 14356868 (+) False AMCG00014461
TU88601 other downstream 637959 17403511 ~ 17448453 (+) False AMCG00014553
TU88725 other downstream 1506302 18271854 ~ 18274360 (+) True G71004
TU89430 other downstream 6089790 22855342 ~ 22855646 (+) True G71525
TU90165 other downstream 11069951 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 11103151 27868703 ~ 27879800 (+) True AMCG00014703

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000009_10103558_10119209.mRNA True 1685 mRNA 0.47 14 CI01000009 10103558 ~ 10119220 (+)