RNA id: AMCG00014537


Basic Information

Item Value
RNA id AMCG00014537
length 6421
RNA type mRNA
GC content 0.48
exon number 46
gene id AMCG00014537
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 16692012 ~ 16719737 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGCGCGACACGGGATTTCAATCGCTTTGATGTAACAGATACgtgtacaattacaataaacacaactttcaaaatatatgcgTTATCTCAATGATGAACGTAATATAAATACGTTAATATCGGAGGGAAAATGCCTAAAAGAGTGAAAAGTGGCACTTTGTCCGCAGGCGCTGTGACAGGTGGGGGTAAAACCTGGGAACCTGGCCTGGTTGCGGCTCGTTTGGAAGAGGATAATTGGAAGGCAGATGTGTCTTTCATTGTTCCTGGGAGGCTGGAGGATGAGGAGCACATCAAGGCCCTCACTGTGGCTGTGCAACAACCTTTGAGGAAGTTGTTTCATGTGGTCACATGGGAGGACATGTTGCAAAAGGTGACAGAATCTGCAAAATCCATTCTGGATACTGGAGAGGAGTTGCCCATTCACCTCACTGGAAAACTCTTGAAGTTCCTGCTGCTGGTGGACAAACATAATGACCTGCAAAGAAGGACAGCAGAGCAGAAAGCTGCAGAGGACAAAGCTAAGGTCAAGGCAGGAGGGCCTCCCGTGAAGGAGAAAGCTGGAAATAAAACCCCTTCCAAAGGCGACAAAGCTAAAAAAGTCACCGAGCCCCCTCCTCCAATGAAGGAAACTAAGCTCAAACGAAGAGGGGAGGAAGATGAAACCAGCAAATATATCGATGATGAACCGGATGACGGTGTAGATCACTACGTGTTAGTCGTTGGTTTCCACCAGCCTCAACTACTGGCCATCCTGCATGAGCTGGGGATTCACGTCTCGAATAccctgaagaaaaagaaggattTGGAGATGTTCTGGAAATATCTGGAGCCAGTTTTGAACAATGCCAAGTCAGGATCAAAGCTGTATGACGTTGCCAGACTTCATTACATGGTGAAGGAAGCCATCTTACCTCAGGACAAGAGCAACAAAGATGTGACGCTGGAGTTGGGGACCATACTGTTTGAAGATGTTGCATGTCTGATTTATGACTGCCTTGACTGGAGGAGACAACATCTCAACTATCTCAATAATATGAAGCTGATCAATGTCCCAGCTGTGTCTAAAGGAGAAGTTTTCACTGATGAGaTTCAGACTATTGCTTCAATAGCACATACTCCAACCTCGAAAAAGAAGCCATTAACAGAGGATACACAGCAGCCTCTACAAGTATATATCCCAGAACATATCCCAGATGCCCCTGCCCTTACCACTGAAGTGGACATGCGCTATTACAATGTTTTGCTGGGCCTGATTCCTCCAGAGACTGTGTCTGTGCCTTTAATCCTACACTGCATGCTTGAACAGATTGTTGCAACAGAAGAAGATATCCCTCCTTTATCTGAAATAGCTCCACAAACATGTGCTGATGGATTGGACCAAAGTCTTACAGATTACATGGTATCTGCAGTGCTGAGTCTGTCAATCtcagaacaggaaaaaaagGTTCATGAAAGTTTTGATGCAGTGAAAGCTGAAAGGGAAATTCTTCAAAAGATCCCAATATCACAAGTCCTTCATTTCGCACAGCCTCTGCACGAAAACAAGAGGCACATGGCCCGGATTCAGGAGCTAATTCACTTCTGCACAGATGaaaCTCTGAGTTGGTCAGAAGTTGAAAGAGCCTTCAACCAGTTTTTGTTTGAGAGTATGAAGCTGACAGAGGTGGATGATAGAGGATTCCTGACAGAAACTACACTGGAGGAACCAGGGGTCATACCTTGGGACGACCCTGTCCTTTTTGCAAAAGAgctgacaacaaaacaaatgaataaatcaaatgatGTTAAGAAGAGCAGAGCGAGCAGTAGAAACAGCAGCTCAGACCCAGTGCATAGCTCACAGAGAGAGGGACGCAGACGGTATTCTGACTCTAACAGCTCCGtgcACAACAACAACGGAGTCGAACCTTTACTAAGAAAACAgGAATGGGAAGAAATGTGCCAATCCATCAAAATCAATACTGAGGAACTCCAAAAAACTCAACTTCGGTCTATGAGTGACTGGTATTTTGCAGAGCATTatgaacaaaatgtgtttttacagATCCTCCACAATTGTTACCAAACATATCAATGCACCGATATGTACCGTCGCACTCAGGATAACTCCCTTTTCCTGGTGTTTCACAACCCTATGAACAGCCAGCGACAGAGCCAGGAAAAATGGGATATGGCTCTCCATTCCAACGTTGGCTTCAGAAACTACCTGGAGCATGTTTCTGATTCTATTTCGGACTGGGTACGAGATGAAGAGGTGAAATGGCAAGCTTCTCTCCGGGAGAAAGAGGCAGAGAATCTGAAGATGTCACAGTGCTCCTCCTCTGATCCTTCAGAAGGGCCTAGGCCTGTCACCccaaagaagaagaggaaatcTCCTTCCCCGAAAAAAACTGgaaGATCACCCAGCAGATCACCAAGCAAAACTGAAAGTGTTTCTGAACCTCAGTCAGCACGGGACCCATTTGTGCGTGAAGGGTCACTGAAGGCCTGGagggaagagcaggagaaactGAAGGAAGAGGAAGCCGCAAAGaaggcaaagaaagaaaagggggTAAAGAAGAAAGGAGACCGGTCAGTTTCCGCTGACAGCAAAAGAGCCCTGTCTTCTGCCAAGAAATCCCCCCCGGGTAGAATGAAAGAGGAACCCATCACAACCCCTGAACCTCCTGCAGCTAAAGTTCAGATGGCAGCAGCTTCAGTGCCacctgaaaacaaatgcagaTTCACGGGCTACACTATGGGCGATGACCTGATCCAGGTTTCTGGGCAGATTCagtctttctttccctctgaTGGAGGGCAGATCACAGTGCAAAGCACACATTTTGTCCAAgGCTCATCTCTAATTCAAGTGCGAGTGTTGAAAGACAAACATCACTTTTTCGTCCATATCACTGACCCTGTGAAAGAACTGGAGGATGAAGAATATACAGTCAAAAATGAAGTTGTCTGTGGTGAAAAAGAAGaaaTTAGGAAAAAGAGGAAAGGAATTAGCAAATTTGGATCATTTTCTGCTGTATTGGACAATggaatgcatctctctctcagcaACTACGGCCCCTCTGGCAAAGGCAGAGATGAGAAAGACCCCAATTTGGCTTTGGTACTGAACATTCCTCCTGCTTCCACACCTTCTCCTACACCCTCCGCCCCCATTTCTCCCACTACCCCGAGAAAAAAGCCCAAATCCCCCCATGCCAAGTCCCCCCGTTCACCCAAAAGCTCTCGAGCCAGAGTGGCTACTTCATCTCCCCTTGTGGTAGAGGACCCCTCCAAGCAAGAGGACATACAGGTGGACAAGAATGCCCCTTCCACAGCAGCTCATATAGAAGATAGATCTCCAGGTCCCCCTCCCTTCCAGTCTCTGAATGTATCAGCACCCAGTGGACTGGTAGTGAAGTTCCTCAGTGAAAGCTCAGCAGATTTCACAGGAGACTCCTTTCAGGACTCTCACAGGATGCTAGTGAGACAGAGATATCCCGTGACTCACAGCAGCCTCTCAAACGCCAAAAGGAAAGAGCTCTCGCTGGTGGGTGAAGTGTCCAGAGTGATTACCAGCCAAGGAACTGTGATCAAATACATGAGAGATGGATCCAGTGAGGTGCTTTTTGCTGACGGCACTGTTAGCAAACGACTTGATTCACTTGATTCAGGGCCAATCTGTAAGCCCCCGCCTGCTCCTCCTCAAGTTGAACAAGAGGCTCCTGTTAAAAAGGAAGTGATAGAAAAGAAACCTGAAGGGAAAGAACCCACAGAAAAGAAAGGGAAGCTCAATCAGAAGGCAAGTGCGGTTGTAGTCAAGGCAGAGGAGGCTGAGCCCAGTGTCTTGGATCTCAAGGCTGAAGTGGAGTGCATTCCTGAAGCCCAAGTGGGAACCTGGGTCACCACAACACCATCTGGGCTCAGGGTGGcaacaaaaggagaaaaaaaggttGACACTAAACATGCTTTGGTTTACAAAGCCACAGACCCCATCAATGGATCAGTTATGATAACCAGAGAAGATAAAGTACTCACTGTGCTGGAGAAAGATGGCACTGTCATTGTGGACCATGCAGATGGCACCAGAATAACCACCTTGTACCAAGATGTTGAAATCCCTTTTCCTATTACCatcaccaaaaaagaaaaaatcatttGGGTAGAGTGCTTGGGATTCGCCACTATGATAATAAACCAAGAAGACAACACAGTGACTGCTATTTTTGGAGATGGGACTACAGTAACAGCTAGTCCTCAAGGATCATACCAGGTCATTCCATCAAGTGTGGGGTGCCTCCACTTTGACCTGGAGGGCTGTGCAGTGTACAGCTCCACACTGTGCCGTGATGTAACACTGGCCCCTGTCGGTACTAACATAGAACTGCAGCCTGGAAGCTACATTATGCGACACACCTCGGATATTATCTGTGAGGTGATGGACCCAGAGGGAAACCTCTTTCAGGTAACAGTGGATGGAACAACCTCAGCTGTCATCTCCAACACTGAAGACAACACAGAGGAAGAAAAGCAAGGAGACAAGGAGAAAGAGAGTTCAGAACCCAGGCAGTTTCAACACGTGGCTTCTAAAGAAAACTCACCAAGATTAGAAAAGTGCACCATGGGTTCCAGGTATTTCATGGTCCATGCAGATGGTTCTGGTACTGAACTGCTGCACTGCACAGATGTGGAAGCCATCCTGTCAGAGGCCTACTCTGACCCAGCTACAGCAGTGCTCAAGGAACCAATGCCGGAAATCTTAGGCATCCATGGAATTACAATTCTCCGGCCCTGCAAACAGGATGTGTGGTCTCGCTGGCTGAaccagaaagaaagagacaatATAATTCCTCCAAACCTTCAGTCTAGGAGATGGGACACATTTCCTTCAACAGAGAAGAAGGTTCCCGGGCCTCCTTTCGGCAGCACCCTGGGGAAGGGTCTTTACCTGACCGAGCGCCCTGTGTCGGCTCAGCCCATGCCTGTATTAAAGTGTCCTGAGGTGCTGGAGGTTCGCCAGCTAATCCAGTATGCACCCATAAGCAGTGATCTACGGAGGAAGATGCAGATGTCCTTAAAGGAGTACATGGACCACATCCTGACAAAGGAGCACATAGCAGATCAGCTGCTACTGAAGGATCCCAGGACCCAGGAGGAGAGAGTTCACGCTGCAGATTTGCTCAAACTCGTCCTGTCTTTCCCTGAAGATTCAACAGACCctgaggagaagagagagaaacatgTGGATATTGCCTCCTTATATACGCAAGCCATTACTACTCCTCCCAAAACCCCCCCAGAACCTGTGCGATCACAGCGTACAGAGGAGGACATGGAAAGGGACAGACAGGAGAGGCTCGAAGAACAGAGATGCAAAGAGGCTCTGAAGAACCGAACAATACCAGCGTATTTTAACTCTGAATTTGGCAAAGCATTCTTGCTCACCCAAGATCTAGATATGACATTCCTGTCCAGAGAGCTCCCACCATTCCCAAAAAGAGAGACAACACAGCCTGGGAGTAAAATCCATCAAGCTCCCTCAGAACTGACCGGTGGTACAACAAAGAATTCAGGAAATCGGCCTCACGTGTCTTCAGTTCCGCCTCACTCCATCCCTAAAGAGGGAACTGAAAGGCTTTCCCATGCCAGATCAAGACCAAAGGATGTGTATACAGTGAAGAGTGCTGCCCCCCTATCTCACAGTATGCTGCTGGATGTGACTGGGGCTCCTCGTAAGGAGAAGGTCAGAATCCCTTCTGCCATCCTCAGCTGCAAGCCTGGAGGACTTCCTAATCATAAGTTCATTGCAGTGGAGGACCCGGTGAGGAGGAAGGTGAACACTGTGTCGGTGGCTGGCCCTCAAGCTCACGGGGTCCTGCAGTGCGCTCCCCGGGGCTTCGAGCTGTTCCCCGCAGATGTGCAGTTTGGGGTTCTGAGAGAAGGCTACACCTACTCCGTCACTGTGGCGCTGAAGAATGTCGGGATTGACTCGTGCAGATTCAGTGTGATCCAGCCACCACCCTCCACAGGCCTAAGAGTTATATACACCCCTGGACCAGTGGCTGCTGGGATGAAGACAGACCTACTCATAGAGCTGTATGCCATGGCCATTGGGCTGGAGGAGACTGAAGGAGCAGGTCACATTGCCCACCACATTCCCATCCAGACAGAGATGGAGATTCTCTATCTGCCTTTGTTTGAAAGCAGCACAAAAGACTTTCCCCAGGGCAAGACAGGAGCAAGAGTGCGACTCGTCTCAACCACCCCCTCCTCCAGACGAGGAATCATACGGCCTCACAAACTAGATTTAGATCATACCTTTGTGACACAGGCCTCTTGAAGTCCACCCTACACTGCTACAATTCTCCCCCAAAATGACTTTCTTCATCCTGTTTGTGCTAAATGACCCAAAAACATGTTGTGCATTGTTCACGCTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88391 lncRNA upstream 200894 16490411 ~ 16491118 (+) True G70735
TU88264 lncRNA upstream 451674 16237110 ~ 16240338 (+) True G70637
TU88167 lncRNA upstream 773391 15918413 ~ 15918621 (+) True G70562
TU88084 lncRNA upstream 963095 15727434 ~ 15728917 (+) True G70496
TU87982 lncRNA upstream 1166997 15522525 ~ 15525015 (+) True G70418
TU88448 lncRNA downstream 11141 16730878 ~ 16733637 (+) True G70776
TU88522 lncRNA downstream 309223 17028960 ~ 17097964 (+) True G70835
TU88535 lncRNA downstream 412326 17132063 ~ 17173062 (+) True G70846
TU88555 lncRNA downstream 530582 17250319 ~ 17253671 (+) True G70865
TU88575 lncRNA downstream 596516 17316253 ~ 17317556 (+) True G70883
AMCG00014535 mRNA upstream 80351 16583824 ~ 16611661 (+) True AMCG00014535
AMCG00014531 mRNA upstream 113855 16557564 ~ 16578157 (+) True AMCG00014531
AMCG00014523 mRNA upstream 210456 16473794 ~ 16481556 (+) True AMCG00014523
AMCG00014525 mRNA upstream 222803 16465621 ~ 16469209 (+) True AMCG00014525
AMCG00014522 mRNA upstream 241361 16448663 ~ 16450651 (+) True AMCG00014522
AMCG00014538 mRNA downstream 2461 16722198 ~ 16731869 (+) True AMCG00014538
AMCG00014536 mRNA downstream 17746 16737483 ~ 16765552 (+) True AMCG00014536
AMCG00014552 mRNA downstream 609176 17328913 ~ 17332815 (+) True AMCG00014552
AMCG00014553 mRNA downstream 645061 17364798 ~ 17431231 (+) False AMCG00014553
AMCG00014560 mRNA downstream 1059828 17779565 ~ 17780081 (+) True AMCG00014560
TU88385 other upstream 222899 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 559210 16129525 ~ 16132802 (+) False AMCG00014508
TU88057 other upstream 1012224 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other upstream 1012224 15675631 ~ 15679788 (+) False AMCG00014490
TU87778 other upstream 2335144 14336858 ~ 14356868 (+) False AMCG00014461
TU88601 other downstream 683774 17403511 ~ 17448453 (+) False AMCG00014553
TU88725 other downstream 1552117 18271854 ~ 18274360 (+) True G71004
TU89430 other downstream 6135605 22855342 ~ 22855646 (+) True G71525
TU90165 other downstream 11115766 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 11148966 27868703 ~ 27879800 (+) True AMCG00014703

Expression Profile