RNA id: AMCG00014541


Basic Information

Item Value
RNA id AMCG00014541
length 813
RNA type mRNA
GC content 0.53
exon number 6
gene id AMCG00014541
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 16800041 ~ 16814919 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAGCAGGGCTCACGTTTCCCAGATCTGTGCAGGCCTTTGACAGCTGCAGAAACCACACATCAGTGGGGGGACTAGGCGACAGCTTCTATGAGTACCTATTAAAAGCCTGGCTGATGTCGGATAAAACTGACAATGAAGCGAGGATGATGTATGATGATGCCATTGAGGCTATCGAGAGACACTTGATCCGGAAATCCAACGGCGGGCTGACCTTTATCGGGGAATGGAAGAACGGCCACCTGGAGAGGAAGATGGGCCACCTGACGTGTTTCGCTGGCGGCATGTTTGCTCTTGGGGCAGATGGGTCGCCTCTGGACAAAGCCGGCCACTACCTCCAGCTCGGAGCGGAGATTGCACACACCTGCCATGAATCCTACGACAGGACAGTGTTAAAGGTTGGCCCAGAGGCATTCAAATTTGACAGCGGGTTGGAGGCCGTTGCAGTCCGACAGAATGAGAAGTACTACATCCTGCGTCCTGAGGTGATCGAGACCTACTGGTACATGTGGAGATATACCCATGACCCGAAGTACCGGCAGTGGGGCTGGGAGGCAGCGCAGgcCATTGACAAGTACTGCAGGGTCAGCGGTGGTTTCTCCGGAGTCAAAGATGTCTACTCCTCAAACCCGGCATATGACGATGTTCAACAAAGCTTCTTCCTCGCTGAAACTTTGAAGTATCTGTACCTCCTGTTCTCCAGTGACGACCTGTTACCTTTAGATAACTGGGTCTTCAACACCGAGGCCCATCCCTTGCCTGTACTGCACCTGGGAAATATAACCCTAGCAGGCAACAATGCTTTTCGATAG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88472 lncRNA downstream 76491 16722073 ~ 16723550 (-) False AMCG00014539
TU88386 lncRNA downstream 330813 16465779 ~ 16469228 (-) True G70731
TU88331 lncRNA downstream 430577 16366124 ~ 16369464 (-) True G70689
TU88319 lncRNA downstream 518142 16281685 ~ 16281899 (-) True G70679
TU88297 lncRNA downstream 585914 16212544 ~ 16214127 (-) True G70660
TU88566 lncRNA upstream 469400 17284319 ~ 17284576 (-) True G70876
TU88592 lncRNA upstream 534517 17349436 ~ 17350972 (-) True G70898
TU88625 lncRNA upstream 631949 17446868 ~ 17448717 (-) False AMCG00014555
TU88648 lncRNA upstream 785542 17600461 ~ 17615905 (-) False AMCG00014559
TU88667 lncRNA upstream 1188891 18003810 ~ 18004023 (-) True G70954
AMCG00014540 mRNA downstream 14519 16783077 ~ 16785522 (-) True AMCG00014540
AMCG00014539 mRNA downstream 62164 16722215 ~ 16737877 (-) True AMCG00014539
AMCG00014534 mRNA downstream 287990 16507387 ~ 16512051 (-) True AMCG00014534
AMCG00014532 mRNA downstream 295965 16497287 ~ 16504076 (-) True AMCG00014532
AMCG00014533 mRNA downstream 303460 16479887 ~ 16496581 (-) True AMCG00014533
AMCG00014544 mRNA upstream 11726 16826645 ~ 16955741 (-) True AMCG00014544
AMCG00014542 mRNA upstream 151873 16966792 ~ 16973783 (-) True AMCG00014542
AMCG00014543 mRNA upstream 161491 16976410 ~ 16977779 (-) True AMCG00014543
AMCG00014545 mRNA upstream 176250 16991169 ~ 17002661 (-) True AMCG00014545
AMCG00014546 mRNA upstream 217611 17032530 ~ 17035481 (-) True AMCG00014546
TU87063 other downstream 5137548 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 6001894 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 7482874 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 8415817 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 8641451 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 11514820 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 12574371 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 15448248 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 15782543 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 15782543 32597462 ~ 32619149 (-) False G73127

Expression Profile