RNA id: AMCG00014545


Basic Information

Item Value
RNA id AMCG00014545
length 4030
RNA type mRNA
GC content 0.50
exon number 23
gene id AMCG00014545
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 16991169 ~ 17002661 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCGGGTTCAAATGTCTCTTCCGATTGGATAAAGTAATTTTTTCGAATTACATCGCGCCTGCGCAGTGCTTATAGGACTGTCCGGATGCATGTAGCACAGTAGAAGTGGTAATcattatggaaaataaacaacaatggAAAAAGTAATTTGTGATAGACACGGCAACACATGCTTGCTGAAGACCGGTGTCAGAGAGGGACCGAACAAAGGGAAAAGCTTTTATCTCTGCAGAGCAAAACATGGAGAATCGTGTGACTTTAACAAACCTGCAGACATCCCTCCATCGCACTGCCTGCATCATGAGGATTCTTTAGTTGAGCTCCAGGCCCTTGTGAAACATGAAGACCAGCAGTGCTACAGGTTATTCTTTCGTTGTGTTACGGGAAAGGCCGATGGGAAGAAGTGGTGTGGGAATGTGCCATGGCAGcagaaaaaggaggaaaagagTCGACACCCCTCCAAAGCAGAATTCACCCAGCATCCTCAAGAGAGAAACCCATTCAAGGCCCAGAACAAGCCCGAGAAGCCCTCAGACTGGAAAGTGCTGCGTGAATGTGGCAGTGTGAGTGGAGAGGGTGACAAGGAAAATGGCTCCAGCACCCAATCCAGTGAAGTAAGGAGGGCAAAACAGCTGCCAGCAGGCATGAAGATAAAGTCTAGGTCATCTGATGAGGCTCAGAACTGCTCCAaaacttcaaaagaaaatgtaggaGTTGAGAATAAAACTGCAAGTGGGATTGAACGTCAAGGAGAGCActtaaagaaagagaaaacctCTACCACTGGGGACAGAAACAGAACCGATAAATCTGAGAAACCAAACATGCACTTAAATCTTGCAGCTCAGCAGAACCAGGACAGAGAAAGACAGCCCAAGCACTTGACTGAAGTAAAGAGTAGTAGCCAGGATAGTGAAACCCAAAGACTCAAAGATTCATCAAAGAAAGAACGCAAATCCGATCAGGATAAAGGTTGCAAAAGTGCGTCAGTGAGGAAGGAGCTGGCTTCACAACAGGGAGGAACCAGTGAGGATGAAAGGAAAGGGGAAATCTGTACTTCAGAGGTTAAAGGCATTATCAGCAAAGAGTCTCCAAGGACCAAAGGAGTTCAGCAGGAAGAGGCTGGGAGACTGCAAGGAAAGCCTGTGGAAGACTGTTCTAACGGTAAACCCTGCGCAGGGCAGGCCACGGCCACGGTAAAGCCGGCTGAGGAGAAGGTGGTGGAGAAGGCTGATGACAACGATGAGGTGTTGCTGGTATCTGTACAGCCTGGAAACAAGCGGCCCTCTCCAGTGGCCCCTGTGCAGAAGACTTTAACTGCTTTCGCCGGCTTCCAGTCCGCACCCCGCTTGCAGCCTAGGCCTCCAGACTCCAGGGCTCTGCACAGCGAGCTCTCCGCTCAGCTCAAACAGAAGAAGGCCACACTGTCTTCTGTGAATATTTCGATGCTCCCTGACAAGGGTCAGAGGCTGCTGAATCAGGTAAAGGACTTGGAAGACGCTCTGGAATCTCTGAGCCTCTCTGTGGCCCCTGAGAGTGAAGGCAACAAGCAGGATGCATCGGGCAGTGAAGAGGGTAATCGGGTGCCTGCTCCCAGCCAGTATAACCCATTCGCCCGGTCCAAGGGTACCATTCTGCTGCCTGGGCCTGTGCTTCATCCAGAGTCCCAGCCCAGCAACCTGGGGCTAAACTTTCACAGCGGCCCTTCCTCCAGTCAGGGATACATCCAGATGTATGGAGTGAACTCACAGCAGAATGCCCTGTACGGCGGCCGCATGACCGAAGACAGACTCCTGGTGGTCCGCAACGCCACAGCAGACGCCATCGACCATCTGCACAAGTCTCTGGAGTCCTGCCCCGCCACAGAGAAAGAGGTCGAGGACCCAAAGGGGCTCAAGGCACGTGATGTTTATTATATTGTGGAGGTCCGCTTAATGCCTCATCAGAGGCAGGCCCTGGCGTGGCTTCTGTGGCGGGAGACTCAAAAACCATGTGGAGGAATTCtggCTGATGACATGGGCTTAGGGAAGACCCTGACGATGATTGCCCTGATCCTCGCGCAGAAGAAGAAGACTgataaaaaagacattaaacTGGAGGGATGGATTTCCAGAAATGATTCCGCTCTCGTGGTGTCCCAGGGCACTCTGATCATCTGCCCCGCCTCTCTCATTCACCACTGGAAGAAGGAAATTGAGAGGCACGTCAAGGGTAGCAAACTGAGTGTCTATCTGTACCATGGACCCAACAGACAGAGAAATGCAGAAGTTCTAGCTGAGCATGATGTGGTGGTGACCACATACACCCTGGTGTCAAAGGAGATTCCAGTGGAGAAGGAAGAGGCAGAGAAGCCTTCAAAGGATGAAGAGAAAGTGGGGTCCCATCAGCCACCCCTCTTGCGTGTGGCCTGGTCACGCATCGTGCTGGACGAAGGTCACAACATCAAGAACCCTCGTGTCCAGACCTCCATGGCTGTGTGCAAGCTGCGAGCCGGGGCGCGCTGGGTGGTGACGGGCACTCCGATTCAGAACAACCTGCTAGACATGTACGCTCTGCTGAAGTTTCTCAGGTGCTCCCCCTTTGATGAATACAAGCTGTGGAAGACTCAGGTGGACAATGGCTCcaagaggggaggagagaggctGAACATCCTCACCAAAACCCTTCTGCTGAGGAGAACAAAGGACCAGCTTGACTCCACAGGGAAACCCCTGGTTTCTTTACCTGAGCGTAGTTGTCTGATTCATCGTGTCAAGCTTTCTAAAGATGAACAGTCAGTTTATGATGTACTTTTTGCACAATCCAGATCAACCCTGCAGTCTTACCTTCAGAGACATGAAGGTGGAGAGTCCAAGCAGACTGGAAACACTAAAAATCCCTTCAACAAAGtGGCTCAAGAGTTTGGGACTTGCCAGCCCGGTGCTCTTTCCGGTTCTCAGAGTCGATCTCAGTCCTCAGCCTCCAGCACAGTACATATCCTCTCCCTGCTGCTGCGCCTGCGCCAATGCTGCTGCCATCTGTCTCTGCTTAAAAAGGTTTTGGATCACACAGACCTGCAGAATGAAGGGATAACCCTTTCTCTGGAGGAGCAGCTCAGTGCCATGTCCCTGGCAGAGCCCTCCAGCACTGATCCCAAGTCCACAGTCTCTCTGAACGGGAGCCAGTTCAGGTCGGACCTTTTTGATGACACGTCGGAGAGCACAAAGATCTCTGCAATTCTCACTGCACTGAAAGAAATTAGAAGGATTTCAGACACTCATAAAAGTGTGATTGTGTCCCAGTGGACAAGCATGCTGCGCATTGTGGCCCTTCACCTGACCCGAATGGGACTGTGCTTCGCCACAGTGGACGGCTCTGTCAATCCTAAGCAGCGGATGGACCTGGTGGAGGAATTCAACACCAACCCAAAAGGGCCACAGGTGATGCTGGTGTCCCTGTGTGCTGGAGGCGTTGGCATAAACCTTGTTGGAGGAAACCATCTCTTCCTAATGGACATGCACTGGAACCCTGCACTGGAGGACCAGGCTTGTGACAGGATATACAGAGTGGGTCAGCTGAAGGATGTTACCATACACAGGTTTGTGTGTGAAGGCACAGTGGAGGACAAGATCTCTACTCTtcaggagaagaagaaggagtTGGCTAAGAAAGTGCTCTCGGGCACAGGAGACTCCTTCACCAAGCTCACACTGGCAGACCTCAAGATCATTTTTGGTGTctaataatttaagaaaatggcTGACCCCTTTGCTCTTATGGATGGCTTCCATGACCACATGCCTAAAATGATTCTTCTTCATGACCCAGATAGATTAAAGCAATGTAGTGAGCCTGTCACCTTCCAGACTGTTGCAGTTAACTTGGGTGATGTTTGGCTGTCTTTGTGACAGATGCTCATTCATTGACTTTCCTTCAGACTATAATTGTCacatatgtgtttttgttttgtcagtcaGTGCTTTATAACTGacattaaagtttaaaaaaagcacacaataaataaataatccaaatGGAAACCATGAACATGA

Function

GO: NA

KEGG:

id description
K15173 TTF2; transcription termination factor 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88472 lncRNA downstream 267619 16722073 ~ 16723550 (-) False AMCG00014539
TU88386 lncRNA downstream 521941 16465779 ~ 16469228 (-) True G70731
TU88331 lncRNA downstream 621705 16366124 ~ 16369464 (-) True G70689
TU88319 lncRNA downstream 709270 16281685 ~ 16281899 (-) True G70679
TU88297 lncRNA downstream 777042 16212544 ~ 16214127 (-) True G70660
TU88566 lncRNA upstream 281658 17284319 ~ 17284576 (-) True G70876
TU88592 lncRNA upstream 346775 17349436 ~ 17350972 (-) True G70898
TU88625 lncRNA upstream 444207 17446868 ~ 17448717 (-) False AMCG00014555
TU88648 lncRNA upstream 597800 17600461 ~ 17615905 (-) False AMCG00014559
TU88667 lncRNA upstream 1001149 18003810 ~ 18004023 (-) True G70954
AMCG00014543 mRNA downstream 13390 16976410 ~ 16977779 (-) True AMCG00014543
AMCG00014542 mRNA downstream 17386 16966792 ~ 16973783 (-) True AMCG00014542
AMCG00014544 mRNA downstream 35428 16826645 ~ 16955741 (-) True AMCG00014544
AMCG00014541 mRNA downstream 176250 16800041 ~ 16814919 (-) True AMCG00014541
AMCG00014540 mRNA downstream 205647 16783077 ~ 16785522 (-) True AMCG00014540
AMCG00014546 mRNA upstream 29869 17032530 ~ 17035481 (-) True AMCG00014546
AMCG00014547 mRNA upstream 63008 17065669 ~ 17086786 (-) True AMCG00014547
AMCG00014548 mRNA upstream 117543 17120204 ~ 17126776 (-) True AMCG00014548
AMCG00014550 mRNA upstream 168169 17170830 ~ 17241074 (-) True AMCG00014550
AMCG00014549 mRNA upstream 247629 17250290 ~ 17279447 (-) True AMCG00014549
TU87063 other downstream 5328676 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 6193022 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 7674002 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 8606945 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 8832579 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 11327078 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 12386629 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 15260506 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 15594801 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 15594801 32597462 ~ 32619149 (-) False G73127

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00072796 False 4070 mRNA 0.45 23 NC_007120.7 9927516 ~ 9950487 (+)