RNA id: AMCG00014546


Basic Information

Item Value
RNA id AMCG00014546
length 1038
RNA type mRNA
GC content 0.56
exon number 3
gene id AMCG00014546
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 17032530 ~ 17035481 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGGACAGTCGTGTTCGTCTGAACTGCTCCATCACAGCCCAGACAAGCCCAGACTCCCAGTACACCGTGCTGTGGTATGCCAAGAAGACCGGCGAACCGGACGCAGAGCTCCTGCTCAAAATCAACCACAACTCGGCCTTCGAGTACGGGACGTACGCCGAGGAGGAGCGCCTAAAGAGCCGGGTGCAGTCCGAGCGTCTTTCCCCTCAGCTGTTCAGCCTCACGCTGCACCAGGCCGAGCTGAGCGACACTGGTACCTACTACTGCCTCGTTCAGGAGTGGCTGCTTGACCCCAACAACATCTGGTACCAGCTGGCCGAGGAATCTTCTGGGTTCACTGATGTGCTTGTTAAGCTGCCAgAAATTAGGCTGCAGGTGGAGGAATCTGATTCAAACATGACCATTGAAGAACAAGAATCCTTCAGACTCGGTTGCAGCATTCCCTCGCAATCCAGCAAAGACTCGCGCTTCTCCGTCTCGTGGTATGTTCTCCGCGTCAAAGACAGCGggagggaggagcccgagtgtATCTTCTCCATTGGTCACGACGCCGTCTTCGGGAATGGAAACTGCAGCCCCTCTGAGGCCGCGGGCCCCAGCTCCAGACTGCAGTTCGAGAGACCCACCTCAGAGTTGTACAGTCTGACGATACAGAAGGCCAGCCAAAGCGATGCAGGAAACTACTACTGTCATGTGGAGGAGTGGCTGCTCAACCCCAGGAACGCCTGGTACCGCCTAACCACAAACAACTCTGGAGTGACTGTGGTCAATGTGCTCGGACAAGGTTCATCTCTACAGTCGGTGATTTGTTCCAATGACTCCCTGTTCTACTTTGTCTTCTTCTACCCCTTCCCCATTTTCGGGATCCTCCTCATCACCATTCTTTTGGTGCGTTACAAGGCCCGCAACTCCAGCAAAAACTCGGAAGGCAAAAACGGAGCTCCTCTTCTGTGGATCAAGGAGCCCCACATCAATTACTCGCCCACCTGCCTGGACCCTCCCGCTCTCAGCCTCCACCCAGGGTCCGTCGAGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88472 lncRNA downstream 308980 16722073 ~ 16723550 (-) False AMCG00014539
TU88386 lncRNA downstream 563302 16465779 ~ 16469228 (-) True G70731
TU88331 lncRNA downstream 663066 16366124 ~ 16369464 (-) True G70689
TU88319 lncRNA downstream 750631 16281685 ~ 16281899 (-) True G70679
TU88297 lncRNA downstream 818403 16212544 ~ 16214127 (-) True G70660
TU88566 lncRNA upstream 248838 17284319 ~ 17284576 (-) True G70876
TU88592 lncRNA upstream 313955 17349436 ~ 17350972 (-) True G70898
TU88625 lncRNA upstream 411387 17446868 ~ 17448717 (-) False AMCG00014555
TU88648 lncRNA upstream 564980 17600461 ~ 17615905 (-) False AMCG00014559
TU88667 lncRNA upstream 968329 18003810 ~ 18004023 (-) True G70954
AMCG00014545 mRNA downstream 29869 16991169 ~ 17002661 (-) True AMCG00014545
AMCG00014543 mRNA downstream 54751 16976410 ~ 16977779 (-) True AMCG00014543
AMCG00014542 mRNA downstream 58747 16966792 ~ 16973783 (-) True AMCG00014542
AMCG00014544 mRNA downstream 76789 16826645 ~ 16955741 (-) True AMCG00014544
AMCG00014541 mRNA downstream 217611 16800041 ~ 16814919 (-) True AMCG00014541
AMCG00014547 mRNA upstream 30188 17065669 ~ 17086786 (-) True AMCG00014547
AMCG00014548 mRNA upstream 84723 17120204 ~ 17126776 (-) True AMCG00014548
AMCG00014550 mRNA upstream 135349 17170830 ~ 17241074 (-) True AMCG00014550
AMCG00014549 mRNA upstream 214809 17250290 ~ 17279447 (-) True AMCG00014549
AMCG00014551 mRNA upstream 278705 17314186 ~ 17323621 (-) True AMCG00014551
TU87063 other downstream 5370037 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 6234383 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 7715363 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 8648306 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 8873940 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 11294258 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 12353809 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 15227686 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 15561981 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 15561981 32597462 ~ 32619149 (-) False G73127

Expression Profile