RNA id: AMCG00014549


Basic Information

Item Value
RNA id AMCG00014549
length 4584
RNA type mRNA
GC content 0.43
exon number 9
gene id AMCG00014549
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 17250290 ~ 17279447 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCCGTCCCAGACGCCAGGACGCGCTGGTTCTCAAGGGCTGTCAAGTGAAAACGCgtgtaaatacttttttttgatACACCTTTTGATCTTATTTCTGCTCTCAGTAAGTTTTCGTTTTCGTGAGGTGAAGTTGGCAGTAGCATAAATCCAAGCAAAGCCCTAAGGGATCCTGTCTGCGGGGCTGCTGGCCGGTGACAAAGGAAAtccagaaggaaaaaaaaaaatgacgcTTTTTACCAACACGGACCACATCGTCCGATTTGTGTTATTGTCGTTAACGTGTGcaCTAACCCTGGGAAGGATAGTAACAGTTCCTGAAGGCCCTTTGATTCGAGTAGAGGGACAGGATATCTCAATTCCCTGTGAAGTCAATGACTACGAGGGCCCCAGAGAGCAAGACTTTGAATGGAAAGTGATGAAGGGAGGAAATGAAGTTCAGATTATTTCAACTTTTGATTCTTCGTACAGTGACAGTTCCTACGCTGCCCGAGTGAGAAATAAAGATATTACAGTAGATCGAACTGGTGACAACACGGTTGTTCTTAAGATTAAAAGAGTGACGTCAGATGACAGTGCGTTTTACAGCTGCATTACTACCAGCACCGATTCTTCAGTCAAAGGAAACTACGATGCAAGCATACAAGTATTAGTGATTCCAGAAAGCCTGAAAATAATATCTCCCCAAACTTCAAAGACCGTACCTGAAGGCAGTTCCTTTAAGCTGCTTTGCACAGCCACCATTGATTTTGTAGAGCACACTTACCTATCAGTCAGCTGGGCAATCAAAAGGGGCTCCTCTTCTCAAACGATCCTCACTTTCGGTCCAGATGAAAGCATGAAGAGTGAAAGCAGCTACAGTGAGCGATACGCGGATGGCAGCGTGCGTCTGGACCTAGCAGGGAAAGGGCAGTTTGACCTGATAGTCTCTCAGGCTTTGCCCTCTGATGAAGGAGTATACATGTGTTCTGCCAGTGAATGGGTAAAAGAACGGGGTGGTAACTGGGAAAAAATCTTTGGAAACAGCACTGAGGTTGGTGAGGTGAAAGTGACTCCAACAGCGCAATCTTTCATGGTCACCGTGGCACCCAATGCCACTTTAAATACGGACGACACCCTCCACTTAACCTGCACTACTGAGACCAATAATTATGATGTTCTTGGAATGGAGGTTTCGTGGTTTGCCAGTGCTACTCCAAGTAGTGTGCCAGGCAGCGCCCGGTTACTTGTACACATGAGCCGTGATGCAGTGGTGAATGGCTCAGACCTCCTCAGTGTGAGCCGTATTAGTCCAAACGCCTTCAAGCTTGACATCCACAATGTGGACAGCTCAGACTCTGGATATTATTTTTGCCAGGTGGTAGCTTGGATGCAGCAGTCCCCTGGGAAATGGTATAAAGTTGCTGAGAAGACATCAAATGCTGTTAATGTGATAGTGACTTCCCTAGAGCCCTCCTACGATGTAACCCTCCAAGCGGTTCAAACCCCTAGCTTTTCAGATCAGCCGACAGAGCTGGAGTGTAAACTTATAGATGTGAAAAATGCCAAAGGTGTCCGAATGACTGTTGCCTGGAATTACAGGAAAATCACACTTGGAGATATGCCAGTAGTCATTGAAATGATTGCCTCAATGAATGAAAACTGGGATCTGCAAACtggagaaaaatacaaagaccGCGTGGATAAAGGTCACATAGTTCTAAGCAAGGTTAAGCCGGACAGTTTTAAACTGCAGATCCTGCACACACGAGACACAGATAGAGGAGACTATTTCTGCACTGTAACGGCATGGACCCAATCGAGGGATGGCAGCTGGAAGAAGAGTAAGGATGTAAACTCCAGTAATGTCCGAATAAACTGGACTCAACAAAGTCCGAAAAtcgctgttgttgctgtgcccATGAAAATTGCCTTTTCTGGCGGGGACACCTTTGAAATGAGCTGCAACGTGACTGGTGAGAATTTGCAGAGCCCTCTTTACTCTACACTCATAAAGGTGGAGGAGTCCGTGGGGGGGAAAGTCCGGAAGATCATCTCTCTAAGTCGGGACTCGGTTTTGCAATTGGAAGAATGGAATGACAAGGATCGTTTGGACAGTGTGGTCCTGGAGAAAACCAGCCAACACGAGTATCGCTTCAGGATGTATGGAACCCAGATCTCGGACACCGGATTCTATTTCTGCGAGGTCACTGCCTGGACACCAGATGCTGGGAACACCTGGTCACCTGCAACCACTAAAAGTTCTAACAAAGTGAAAGTTGCCTTTGATGATGCAGgTCCAGTTTTCAATGTCTCCATTCACTCGGACACCTTATCAGTTTTCCCTGAAGAAACCACCAAAATTGACTGTGTCATCTCTGCTGTTGGGGCAGCCTCTAACAAAGGcaagtATGACTTCTCCTACGAGGTTGCATGGTTTCTTGACCAGACTCGGTACAAGGAAGGCAGTGTGCACAACATGGCCTTGGTGGACCGTTGGGGTGTGGTGAAGAAGCCCCATCCAAATGGCAGCAGCGACTGCAGCCTGGAGAGGATTGATGAAAAGAAGTATCGCCTTAGCATTCACAAGACTCAGAACAGCGACTATGGGGATTACTATTGCACTGTTACTCCCTGGGTGAAATCCTCCGATGGATCCTGGCAGAAGTCAAAGGACATCACCTCAGAGAATGTCTTCCTGGTTGTGAAGTTTGCAATGTGGGAATCGATGAAGTTGCCGCTGCTGTATGGAGCTGGTGCCGCAGTTGCTGTTGGCCTCCTGTCAGTGCTGATTGGCTTCATCAGTGCCCGCTGCTGCTGTAAGCAAGATGTTGAGGACGACCCCAGGTCCAAACGCCGTCTGATGTCCATGGAAATGGATTGAAAAGAGGGGGCTGGATGGAAATGGAATTGTCTACCAATTGTCTATTTTGGCTACCTTCTGATGAATGTGATGAGATTCAAGCTTTGCGTGCTCAGACACTGCTGGCAAGAAGCCATTTAGAGCTAAAGAACTCAAGCCAATAGAATTAAGTCAATCGGTCATCAgggattgatttttttttttttttttttcctctctctctctatgtgtgtgtgtacgctATTTAAGGCAACAGTCAAAGGAGTAGTGTCTTCTCCATATCCTTTAACTGTTGCCTTAAAACAGGATTAAAGAAAGAATTTatgttcattaaataaaatatatgtaaccCAACCACTCTTAGAATGTCTGAACGAGGGAATTTCTGTCACTGACAATTGCACTGAACTCAGGAAGGTTCCACTGGCAAATATATACCTCTTAAAAAGAGATGACTTTTATAATACTATTCAAATCCAATATGTTTGAAAGCTTTAACTGGGGGCActgcatttttaagtttttaagacCATGGTCAGAGGAAGCTGCTCGGATCTCTCGGAGGCTGTGAAGAGAAGAGTTTTGTATACGTACTCTACCCAGTACTgttattaaagtaatttcataATCTAGTCCACCACCTGGGGAAGAAATTCATGAAGAGATCTATGAATGGCATTCTGCCAGTGTTAACGTTGTCTGGCACAGACGTGCAGAATGGTAAGGGAGCAGAGGGAAAGAATGTCACATTGCCCTGGCTACAGCCTCATTTCACTTGGCATGCACTGTTTGACTATATTCACAAAGAGGGCAATAACCTTCATAGATGTTCTCATCTTTAAACTGATCTCCTTCAAGattgaattttatattttgacagaatgatacttttattttgtaagagaTGCTGATTCCGATCAGCAGTGGTCTGCCTTAAGAATGACCATTTGGAAATTTCACTGTAGTTTAAGTCTCGACATTTTTGTGTCTGCCTACTGCAAAGTGTGTTCATATGAAGATACGTTATTGAGTGTAAGGCCATTGAAGTTACTTCTAatagtttaatataattatcTCAAAGCATTAATAAGTgtattccattattattattattttaacaaagtgtTCTCCGTACAGAATAGTGCAGCGGTTAgtggtttgttttggttatgTGCTTCTTATGTGGGTTGGAGGTGACATTGACCAGTATCATATTGGCCAcactttgcaaaaataaatgtttcttaacAGCTGTTGGGTCAAATATTAGATGAGTCTAGAAGGAACCATCCGGGCGTCAGATGCATCAGAATTTACAACTGCATATTGCACTCGGGAAGGCTGTGGTGgtacaactgaaaatgtaaacatggAAAGGCATTCCAAGAAATACTTAAGGGAAAACACTCATCGATCTATGTTTTGAATCAATGGAGATATACGATGTACTGCTCAAATATGAATACACAGTGAAAAGCCAAAGgttcattattatgttttttaaggaTTACAGTCAAACCTTtgtaagatgtttttattttattttggtgtgttTCGTATGTAAAGATACTAAGATTTTTAGTTTTGCACAAAGGAATGTTTGTCAAGATACTGTATTTCATATATTATCCAGGGAATTATCAGATTTCTAACGATCACagagttttaatgttttttttgtttcgtttatTTCTCTTCtaacacacattaaaatggTATTATAATAAATTTTTTACATGTTCAA

Function

GO: NA

KEGG:

id description
K06729 PTGFRN, CD315; prostaglandin F2 receptor negative regulator

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88472 lncRNA downstream 526740 16722073 ~ 16723550 (-) False AMCG00014539
TU88386 lncRNA downstream 781062 16465779 ~ 16469228 (-) True G70731
TU88331 lncRNA downstream 880826 16366124 ~ 16369464 (-) True G70689
TU88319 lncRNA downstream 968391 16281685 ~ 16281899 (-) True G70679
TU88297 lncRNA downstream 1036163 16212544 ~ 16214127 (-) True G70660
TU88566 lncRNA upstream 4872 17284319 ~ 17284576 (-) True G70876
TU88592 lncRNA upstream 69989 17349436 ~ 17350972 (-) True G70898
TU88625 lncRNA upstream 167421 17446868 ~ 17448717 (-) False AMCG00014555
TU88648 lncRNA upstream 321014 17600461 ~ 17615905 (-) False AMCG00014559
TU88667 lncRNA upstream 724363 18003810 ~ 18004023 (-) True G70954
AMCG00014550 mRNA downstream 9216 17170830 ~ 17241074 (-) True AMCG00014550
AMCG00014548 mRNA downstream 123514 17120204 ~ 17126776 (-) True AMCG00014548
AMCG00014547 mRNA downstream 163504 17065669 ~ 17086786 (-) True AMCG00014547
AMCG00014546 mRNA downstream 214809 17032530 ~ 17035481 (-) True AMCG00014546
AMCG00014545 mRNA downstream 247629 16991169 ~ 17002661 (-) True AMCG00014545
AMCG00014551 mRNA upstream 34739 17314186 ~ 17323621 (-) True AMCG00014551
AMCG00014554 mRNA upstream 139010 17418457 ~ 17432186 (-) True AMCG00014554
AMCG00014555 mRNA upstream 168054 17447501 ~ 17462290 (-) True AMCG00014555
AMCG00014556 mRNA upstream 205403 17484850 ~ 17500956 (-) True AMCG00014556
AMCG00014557 mRNA upstream 276220 17555667 ~ 17566646 (-) True AMCG00014557
TU87063 other downstream 5587797 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 6452143 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 7933123 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 8866066 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 9091700 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 11050292 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 12109843 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 14983720 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 15318015 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 15318015 32597462 ~ 32619149 (-) False G73127

Expression Profile