RNA id: AMCG00014550


Basic Information

Item Value
RNA id AMCG00014550
length 3659
RNA type mRNA
GC content 0.43
exon number 12
gene id AMCG00014550
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 17170830 ~ 17241074 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCACACCGAAGGCTATTTCAAAACTAGGAGGCTCTGTGAAGTTTTAAATGAAGAAGATACAAGACTTGTAAAAGGTAGTTTTATCCTGTCGATATGAATGTGAATATATGACTTCAAAAAGAGAGATTTGCAGGTGGACGACTGCTCTACGTGACAGCTGAAAATTGTATGTCGTCTAGCTGTCAGgaagtctctctctcagacGTGAGGCAGGATGGAGCGGTCACCCTCTCTCGATGGCTGCATGGCTTTTCTGCTGTGCTGCCTTGTTATACTTCTACAATGGGaTTACAGTTTTGCACAAAGATTGGTCCAAGTACAAGATGGTCCATTATACCGAGCCAACGGCTATCCCATCACAATAGCATGCAATGTCAGTGGGTTCAAAGGACCTTCTGAGCAAAATTTTGAGTTTTCTATGTACTTGTCTGCCAACCCCacagctgaaattaaaataatcagtaCGCTGGATCCTTCGACTGCCTATGCCATATATAGGCaaagagttaaaaataaagagatCGAAATTGAGAGAATCACAGGTTCCTCTGTACTATTACACATCAAAAATCTGCAACAGAGTGACCAGGGACAATATGAATGTTCGACTCCAAATACTGATGGAACTTATTTGGGAAGTTACAGCGCCATGACTGATCTTAAAGTCATACAGGACACTCTGACAGCATCCATGAGCACAGGTCCGCTTCGTAAACTGGAAGGAGACCCTCTGCAGCTGGAATGTGAGGTGTCAAGCCAAACCCTGCAGCATACACACATATCTGTCACCTGGTACCTCCGTAAGGCTGGGCAAGATCCACTTCAGATCATTTCTTTAATGAGGGATTTCACCCTGACACCGGGCAGTGAATTTGAGTACAGATATAAGTCGGGACAAATTGGTCTGGATAAAATTGGGATCACAACCTACAGACTGACGATCACTCATCTGCAAGTCGCGGACCAGGGGAATATCTACTGTCAAGCAGGAGAGTGGATTCAGGATCCAGACAAGTCCTGGTTCAAAATCGCTTCCAAAGAAACACAGCCCTCTTCTGTAGAGGTGCAAAAAGTGGACAAAGAAACTGATGATTTTAATGTACGCATTGAGGCTACAGAAGAAGAACTTCAAGAAGGAGAAACTTTAGAGCTAAAATGCATTGTGGAAATTCCAAATATTCTTGACCATTACTTCTCCGTGGCCTGGTTCAAAGACAGCCAGGAAATGGCTCGAATTGGGCCCATGGGTGTACTGACCATTGGAGGTCGctacacagggagagagagtcaaGGAGAGATCAGAGTCTTCAAGAAGAGTGGCAGTGATTACgtgataataattaaacacatcaAGACAAAAGACCAGGGAGCATACCATTGCTCAGTttccaaagaagaaaaaagtccAGGTGGACCTTTTACAACCAAGGAAATGAAAGAATCCAGTCAAGTACAAGTGCAAGTTACTGCTCTCGAGAGCAACTTCAATGTTGCGGTTTCAAATCGCACAATCAACATTGTCGAAGGTGACCATCTTCAGATCAGTTGTAAAGTTGCTGGAATGCAAGGGCAAGTATCTGTTGCTTGGCAGTACAAAAAGGACAATCAAAACCCCTTCAGTGATGTCATCAGCCTAAGCCTGAATGGGGCTCTTGGTGCAGGGGCCCAGTACCGGCAGCGTATTGACAGGGGCGACATTCGCACTGTCAGAATCAATCAGGAGTCATTCGTGCTGGAGATGTCACACTCCCTCCCATCTGATGCAGGCATCTATAGGTGTGTTGTAACAGATTGGATTGCACAGACTGATGGCAACTGGAAAGAAAGAGATAGTAAATCTCAAGAGTCGTCTCTTACAGTTTCACCTCTAGaTTCTGTTATGCGCACTTCTATAAAAAGCCGTCATGCACAAATTGAAGAAGGGAAAGAAATAACGTTGATCTGCTCGGTAAGTGGAACTAAAGTCCCACTATCCACTACATGGAAATTCCAGAAAAATGGATCATCACAACTGCAAGACATAGTGACCCTTCACTACAATGGGGATATCAAGTGGCATAGAGAACTCAACAATTTTGAATTCAAGACCTCAGTGCACAAAGATGACAGGACCTCCTTCTTAAAAGTGTCCAAGGCTAGTATTTTGGAAGCAGGAACATATCAATGTGTTGTGGAAGCATGGATAAGTCAAACAAAACGAGCAAAAAAAGAATCCAATATGTTAGCCATCATTGTCACTAAACCAGGCAGTAAGCTAACTGTTAGGAGTGAGCAACCCGTTTTAGAGCGCAACGTGAATGGGGATGTGGAAATAGCATGTCAAATCCAAGGTGCTACCAATTCTAATTCTCAGTTTGCCGTATCCTGGTATTTCACACCCTCCGAGATGGGGAACACAACTATTCTGAAGATGGACCGTTATCACATTCTAGAGAATGGAGAGATGATGAAAAACAGGAAGCATAAATTCCAACTCATAAGACAATCTGCAGATTCTTACAAACTAGTCATCCTACAAACTGAGTTTGGTGACAGTGGAAAACACTACTGTGTTGTGGAGGAGTGGGTACAAGATCCCAACAACAAGGTCCTGAAGAACAATACCTCTGTCCGCATACCTGAGAGTAATGACTTTATCGTAAACTGCACAATCGACAGTGACATCCAAGCAATGTCACACTTCTCAGTGACCTGGTATTATCAGAATCATGAGGATCCTAAGCTCCCCCTTCTGACGTTCAGTCATGATTCTGTGTTCGAGAATCTGTCACTAAACAAAGAACTCTGGAAGAGAATGCAGTTTTACAGTCCTTCTGCTGGCACTTACAGTTTAGTGATCCGCAACGCGGGCGTTGATGATACAGGAAAGTACTCTTGTAAGGTGGATGAATATGTACTCAACTGCGAAGGTAATATGCAGCCACGCTCCACTGGTGAGTCAGGATTTACAGAAGTTGTTGTACATCATCCAGAGAATAATCTGCATGTGTCTCAGAATGATGCTGTGATTAATTTAAGGGAAGGACAGGGCAGTTTTACAGTCTACTGCAACATAACCACACATTCAAACAACAAGTCTGCATTTGAGGTGACTTGGTTGAAGACTGAAGAAGGAATTACCCATCCCATATTCAAAGCATTGCGCAATTCTACCCTTCAGTTCCTATCTAAAGCCAGAGACCACTTTGTATTCAACAGGCCCTCCACAAACTTGTACAGCCTAACCCTTCCAATGGCTAAAGAAACTGATGCTGGGATCTACTTCTGCAATGTAGAGGAGTGGTTGCTTAACCCAAGGCACAAGTGGTATAAGATTGCGGAGCGTACATCAGGAAACTTAACAGTGTCCATTACAGCAGAAGatgtCAGCACATACTCCACTGTTTGCAGCTCTAAATctctttttgattttgtcttcATCTACCCGTTCATCATCATTGTGCTTCTGATTTGTGTGATCTTCTTTCTGTACTATAAAATGAGGAAGGGTGGAATACACTGCTTGTCCAATACAAACAGACAGAATAAAAGCCTGTGGAAGGAGAAAGACATTCTCCAAAACTTCTCCAGTTCCATGACTGTATGGAAACTGACTTGTGAAGAGACATTTGTAAGAAAAGTCTACTTTTTGTGCTTCCCTACATCCTTCCACAGAATA

Function

GO: NA

KEGG:

id description
K06522 IGSF2_3, CD101; immunoglobulin superfamily, member 2/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88472 lncRNA downstream 447280 16722073 ~ 16723550 (-) False AMCG00014539
TU88386 lncRNA downstream 701602 16465779 ~ 16469228 (-) True G70731
TU88331 lncRNA downstream 801366 16366124 ~ 16369464 (-) True G70689
TU88319 lncRNA downstream 888931 16281685 ~ 16281899 (-) True G70679
TU88297 lncRNA downstream 956703 16212544 ~ 16214127 (-) True G70660
TU88566 lncRNA upstream 43245 17284319 ~ 17284576 (-) True G70876
TU88592 lncRNA upstream 108362 17349436 ~ 17350972 (-) True G70898
TU88625 lncRNA upstream 205794 17446868 ~ 17448717 (-) False AMCG00014555
TU88648 lncRNA upstream 359387 17600461 ~ 17615905 (-) False AMCG00014559
TU88667 lncRNA upstream 762736 18003810 ~ 18004023 (-) True G70954
AMCG00014548 mRNA downstream 44054 17120204 ~ 17126776 (-) True AMCG00014548
AMCG00014547 mRNA downstream 84044 17065669 ~ 17086786 (-) True AMCG00014547
AMCG00014546 mRNA downstream 135349 17032530 ~ 17035481 (-) True AMCG00014546
AMCG00014545 mRNA downstream 168169 16991169 ~ 17002661 (-) True AMCG00014545
AMCG00014543 mRNA downstream 193051 16976410 ~ 16977779 (-) True AMCG00014543
AMCG00014549 mRNA upstream 9216 17250290 ~ 17279447 (-) True AMCG00014549
AMCG00014551 mRNA upstream 73112 17314186 ~ 17323621 (-) True AMCG00014551
AMCG00014554 mRNA upstream 177383 17418457 ~ 17432186 (-) True AMCG00014554
AMCG00014555 mRNA upstream 206427 17447501 ~ 17462290 (-) True AMCG00014555
AMCG00014556 mRNA upstream 243776 17484850 ~ 17500956 (-) True AMCG00014556
TU87063 other downstream 5508337 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 6372683 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 7853663 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 8786606 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 9012240 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 11088665 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 12148216 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 15022093 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 15356388 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 15356388 32597462 ~ 32619149 (-) False G73127

Expression Profile