RNA id: AMCG00014551


Basic Information

Item Value
RNA id AMCG00014551
length 1593
RNA type mRNA
GC content 0.34
exon number 4
gene id AMCG00014551
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 17314186 ~ 17323621 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTATCATAAAACAGCCTTCAATACTTCTGATAAGATCACATTACAGAAACATGGGATATAAAACAGCCAATTTCATCAGTTTAGTGTATTTGCTTACAAGACTACCCTTTTCAGAGCCATCTCCTCAATGTGCTACCTTGGGGAAAGTTTATACACTGTCTCTTGGATATAAACCGGAGAACACAGATGACATAATTTGGAAAGATCAATCACAGAGACTTGTAAGACGTAAAAACATGAAAGTATCTGATCTCCGAGAATATGTAAATATCGACCAAAACGCTTCTCTTCTCCtgaattttttaaaaaaaacagatgaaaaaatatacacagcAGAAGTTTTTAATGAAGCTGGAAAGAGAGTTCATAAAATTAATATACCACTAAAAGTTGTTGAATCAGTATCAAAGCCATACTTGACAATCGACTGCAGTACAAAAACAATATCCTGTGGGGCCAGAAGCATTGATGAAGGGACTCTTGAATtggaattaaatggaaaatctCTGAATATATCCAGTGGAAATGTGACTTACAATGTAAAAGAACAATATGCACATTCTCCTAAGATTACTTGCATTGCAAAGAATTGTGCCAGTGTGGagaaaaatgaaactgaaatgaaatgtgtagtaaATGAAGTACCACCTTCAAATATGCCACCTTCACATCAAAGACAGGCAAAACTGCAACCCCCTCCAAGAACCCGCTCTAAAGCACAGCCACAGAGCAGAGGCCAAACCCCGGCTCTGCCCAAACCCAGAGCCCAGGCTAGGCCCAAGCCTCAGCACAACATCGACCCCCTGTTAGTAGAGGAACAGCCCCCCCCCAGACCAAAACCAAGGTCAAAGTCTGCAAATCCCAACAAGTGTTAGAGGCCAACCCTCTtcctttgtaaaatgtattagtaaTTCAAACAAACAGTAATGTTGATACTCTCCCTGctatttacttttatatttttgtattgccttctttaacatttcatttaaaaaatcaataagaGATTCAATaaggtgttttatttcaaagtttgcCTCCTACcctgaaacaaatatttatttcatgataaatacagcacagttcagtttattataattattatgtagACAGTGTGTTATGCAATGAAACCTTCTTCAAAATTAATCTATGATTAAATTCAATACCTGTGTGTAAAGtagtttttcaaaattaactagatttctgttgttgtttcattttgattatAATGTCCAAGGAAGTCAAATAGAACCAACTGAAAGTGCTTTAGATTGTTTCtggaaaccaaaaaaacattgacctacAACTGACAGGTGATATAAAACTGAAGCTGGACAATTCATGGAAACCAtagaattaatacaaataaacaaaagactATATCAGTAGTGAAATAACTATCTTAGCAGCTCTACTTAATTCACAGATTAAGACAATTACATGTTAATTTACTTATCTATTCTGTTTCCTAGATTTCATGTAAATCTATGTAAATAGTAAATGTTGCAAAACACAGCTTGGAGCAGTGTTTGTATGATTATAattgatatattaatttaatgtttaatctaCCAAATGGATTACTTTacctga

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04650 Natural killer cell mediated cytotoxicity
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88566 lncRNA downstream 29610 17284319 ~ 17284576 (-) True G70876
TU88472 lncRNA downstream 590636 16722073 ~ 16723550 (-) False AMCG00014539
TU88386 lncRNA downstream 844958 16465779 ~ 16469228 (-) True G70731
TU88331 lncRNA downstream 944722 16366124 ~ 16369464 (-) True G70689
TU88319 lncRNA downstream 1032287 16281685 ~ 16281899 (-) True G70679
TU88592 lncRNA upstream 25815 17349436 ~ 17350972 (-) True G70898
TU88625 lncRNA upstream 123247 17446868 ~ 17448717 (-) False AMCG00014555
TU88648 lncRNA upstream 276840 17600461 ~ 17615905 (-) False AMCG00014559
TU88667 lncRNA upstream 680189 18003810 ~ 18004023 (-) True G70954
TU88673 lncRNA upstream 691205 18014826 ~ 18022095 (-) True AMCG00014567
AMCG00014549 mRNA downstream 34739 17250290 ~ 17279447 (-) True AMCG00014549
AMCG00014550 mRNA downstream 73112 17170830 ~ 17241074 (-) True AMCG00014550
AMCG00014548 mRNA downstream 187410 17120204 ~ 17126776 (-) True AMCG00014548
AMCG00014547 mRNA downstream 227400 17065669 ~ 17086786 (-) True AMCG00014547
AMCG00014546 mRNA downstream 278705 17032530 ~ 17035481 (-) True AMCG00014546
AMCG00014554 mRNA upstream 94836 17418457 ~ 17432186 (-) True AMCG00014554
AMCG00014555 mRNA upstream 123880 17447501 ~ 17462290 (-) True AMCG00014555
AMCG00014556 mRNA upstream 161229 17484850 ~ 17500956 (-) True AMCG00014556
AMCG00014557 mRNA upstream 232046 17555667 ~ 17566646 (-) True AMCG00014557
AMCG00014558 mRNA upstream 249282 17572903 ~ 17582074 (-) True AMCG00014558
TU87063 other downstream 5651693 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 6516039 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 7997019 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 8929962 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 9155596 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 11006118 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 12065669 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 14939546 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 15273841 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 15273841 32597462 ~ 32619149 (-) False G73127

Expression Profile