RNA id: AMCG00014556


Basic Information

Item Value
RNA id AMCG00014556
length 5119
RNA type mRNA
GC content 0.42
exon number 22
gene id AMCG00014556
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 17484850 ~ 17500956 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAGGAGGTGATCAGTATAAGTTGGCTGCGACATCGGAGCAGGGGGAGAAGAAgggaaagaaggaaaagaagggAACACATAACACAGATCAAGAAGACCTGAAGAAGGATGTTGATTTGGATGATCACAAGCTCACATTGGATGAACTTAATCAGAAGTATGGCACTGATCTCAGCCGGgGCTTAAGTGCTGCCCGTGCTGCTGAGATCCTAACACGAGATGGCCCCAATGCTCTCAGTCCTCCTCCCACCACCCCAGAATGGGTGAAGTTTTGCAAGCAGATGTTTGGAGGGTTCTGCATGCTTCTCTGGATTGGAGCACTGCTCTGTCTCGGTGCTTACATTATTCAGATTGCCACAGAGGAAGAACCTCCTAGTGACAATttatatttgtgtgtggtacttgttgttgttgttgtcgtcacTGCCTGTTTCTCATACTACCAAGAAGCTAAGAGCTCCAGGATCATGGACTCCTTCAAGAACATGGTCCCTCAGcAAGCTATGGTTATtcgagagggagagaagaaaagcATAAATGCACAGGACGTTGTTGTCGGAGACCTGGTTGAAGTAAAGGGAGGAGACCGAATACCTGCTGATTTGAGAATCATCTCTGCTCAGGGCTGCAAGGTTGACAATTCCTCCCTCACTGGTGAGTCCGAGCCTCAATCCAGATCACCTGAATTTTCCAACGAAAACCCTATTGAGACCAAGAACATTGCCTTTTTTTCAACCAACTGTGTTGAAGGCACTGCTCGTGGCATTGTCATCAACACTGGTGACAGGACTGTGATTGGACGTATTGCTACTCTTGTATCTGGTCTGCAAGTCAGGCAAACTCCTATCTCTATTGAAATTGATCACTTCATCCGTATCATCAGTGCTGTGGCTGTCTTCTTGGGCCTTACCTTCTTCGTCCTGTCGCTCGTCCTTGGCTATACTTGGTTGGATGCTGTCATCTTCCTCATTGGGATCATTGTGGCCAATGTTCCTGAGGGTCTCCTGGCTACCGTCACTGTGTGTCTGACTCTCACAGCAAAGCGTATGGCCCGTAAGAACTGCCTTGTGAAGAATCTGGAAGCTGTGGAGACTCTGGGGTCCACCTCCACCATTTGCTCTGACAAGACTGGAACCCTGACTCAGAACAGAATGACTGTGGCCCATATGTGGTTTGATAACCAGATTCATGAAGCTGACACCACTGAAAACCAGAGCGGCACCTCCTTCAACAAAAGTTCCCCAACCTGGACTGCTCTTGCCCGTGTAGCTGGTATATGCAATCgtgctgtgtttctgtcttcACAAGATGACGTGCCAATTCTTAAGAGAGATGTTGTTGGTGATGCCTCGGAGTCTGCCTTGCTGAAGTGTATTGAGCTGTGCTGTGGATCTGTGAAAGAGTTGAGGGAGCAATACCCTACAGTGGCAGAAATCCCTTTCAACTCCTCCAATAAGTACCAGCTTTCTGTCCACAAGAATGCAAACCCATCTGAAAGCCGATATGTTCTGGTGATGAAGGGAGCCCCGGAGAGAATTCTTGATCGTTGCTCCACCATTCTGATTGAGGGCAAGGAACAGACTTTGGATGATGAGATGAAGGATGCTTTTAATAATGCATACCTTGACCTTGGTGGCCTAGGAGAGAGAGTGCTTGGTCTCTGCCACTATTTGCTCCCTGATGACCAGTTCACAGAAGGATTTAAGTTTGACACAGAGGAGGTGAACTTCCCAACTGAGAATCTCTGCTTTGTTGGCCTGATGTCCCTGATTGACCCCCCTCGTGCAGCTGTGCCTGATGCTGTCGGCAAGTGCAGGAGTGCTGGAATTAAGGTTATCATGGTCACTGGTGACCACCCGATTACAGCCAAGGCTATTGCAAAGGGTGTGGGGATCATCTCTGAGGGCAATGAAACTGTTGAAGATATTGCAGACCGTCTGAAAATCCCTGTTAACGAAGTCAACCCCAGAGATGCCAAGGCCTGTGTCGTTCATGGCAATGACCTGAAGGATATGAGCCCAGAACAGCTGTCAGATATCCTGAGACACCACACTGAGATTGTGTTTGCCAGAACTTCTCCCCAACAGAAGCTAATCATTGTGGAGGGCTGTCAGAATGAGGGTGCTTTTGTAGCTGTGACTGGCGATGGTGTAAATGACTCCCCTGCCCTGAAGAAAGCAGATATTGGTATTGCCATGGGTATTTCAGGCTCAGATGTGTCTAAACAGGCTGCTGACATGATCCTTCTGGATGACAACTTTGCTTCCATCGTGACTGGTGTAGAAGAAGGCCGCCTGATCTTCGATAACCTGAAGAAGTCCATTGCCTACACCCTGACTAGTAAAATTCCAGAGATGACACCCTttcttgcttttgttgttgCCTCCATCCCTCTGCCCCTGGGAATAGTTGCTGTTCTTTGTGTTGACTTGGGTACTGACATGCTTCCAGCTATCTCCCTGGCTTATGAACAAGCAGAGAGTGACATCATGAAGAGACAGCCCAGAAATGCCAAAACAGACAAATTGGTCAATGAAAGGCTGATCAGTATGGCTTATGGTCAAATCGGTATGATTCAAGCCCTTGGAGCATTTTTCACCTATTTCGTTGTCCTGTCTGAGAATGGTTTCCTGCCACTCAAAGTACTTGGCCTCCGTGTTGACTGGGATGATAAATTTTTAAATGAGTTGGAGGACAGCTATGGACAACAGTGGACCTATGAGCAAAGAAAGGTTCTTGAATATACCTGTTACACAGCCTTCTTCATCAGCATTGTGGTTGAGCAGTGGGCTGACTTGATCATCTGTAAGACGAGGAGAAATTCAATCATCCACCAGGGAATGAAGCCAGGCTATTGGTTCTGCGCTTTCCCTTTTGCCATCCTTATCATTGTTTATGATGAAACCAGGAGATTTCTCCTCCGACGCTACCCAGGAGGTTGGGTGGAGAAAGAGACGTACTATTAAACCATCACTGTACATCACACCGTTGCATGCATGGTAGTCTTGCTGATCTGACATTTAACTTAACATCAGATGTGTTTTATGgagaacattcaaaacaatggaGATGGCGAACCAAGACATTATGTGTCTTTGTTCTGGAGCAGGACAAATCAAATTTTATACCCATTTTtaacagtgtaataaaaaaaataacctttCAGTCAAGTCTCATTTCTGGACTCGGTAACATATAATTtcagcaatttattttgttgtcttttatttgCCCATCAAAGCTATGATGAAAGGCCAGAATCCCAggttgtacattgttttttctattaGATTGTACCGTTATGTGTGATCATTCTTGGGATATGGGTGAAGTAGAGAAGTGTACAATCTATCATTTCCCTCCCTGCCTCTTCCccaacacagaaacacaaagttTACAAGGTTTACAAAACAGTTCTTCAACTGCCCATAATCTCATTATGAATTTTATAGCTATGTAATTTAATGAAGATTCTCTATTTTCTGTTAGTGATACTAATGCACTACTAGTAAAAATTAAAGCAATCTCCTTAAAATTTGTTTGATCATGTCTTGATATAATTTAACCCAGAATTACAAGtttgtctttatatatacatattgtatgcCCCTCTTTTAATAGTAGgcctataaataaattaatcgtCATTAATTAAGTGTAGGCTACTCTAGTAAGGAACAGACATGTGAAAGACAAATGTTAACACTGAaggactgagacacagagataggcctgtatttgtctttgtgtaTGGAAGATTTTTGGtttatgcattatattatttgtagaGTGCCTTCTAGTAGATCAGAAGTTTGATATGTTCTCAgatctaaaatctaaaaagtCTCAGTATCTGTGTTATATTTGGCAATTATGACATTGCGGTCAATAGTTATGTAGTCcttctgtaatacattttgattacaTTATGTGTTTGCATCAGCAAAGTCCTAACTAACAGTATGATACAAAAGCAAGAAATGTTTTTCTATAAAGCTCTATTTCGCTTACACTATTGACACTATAGAATATGTTCAATCATGGAAACCTCTCTTAATTATAAGTtaaataggcctatattattttaacaagtttAAACTGCCTATGGGGATTATCTGCATAATGACCACAAAGCTTATTACCTTAACGACTTTAGCATAGTGCCAAGCAGACACCATGAATTGTAGACAGTGTAGCATAAAATTGATAgaaaattcaaattttaataagtATAGAAAGATCACAGTAAActgtaattcatattaattgAAAAGTTATTGGAAAATTGACATTAAAGTATGAAAGATGGTGATGAGATCAGAGATACCACACTTCTCTTGATGAAGAATCAGAGTTTCAgcttattgtatttcattaaaaatgcattgtctCATCAAAATTTCCCATTATAGACCCTGgttgggattaaatcaaaactttgacccacccgctaatcaaaaactacagaactgtactcaattgcggcttcattttcagtaagatgccactttcttctaatcagaaatgtaactgctatgatgtacaacTTCGTAGTTTGAAATTAGCGGGTGGgtccaagttttgatttaatccagcccccgTCTCCAAGCCACgtgtaacattttcacttaaCGAATCTATCTGCAACTTAACCTGTGTGGGTGATGAGGACAGTGAATACAGCTGGGAAATAAATGGACAAGACCAACTGCATATGAATGGAAAGACAATGACCTTTTCAGAAGTCACTGACCTTGATACAGTATACATCTGCAAAGTCAAAAACTCCAAGAGAGTTACCCCATTGTAGCAAAAAAATGCTTTCCCGCAGGACCAAAGACCAAATATTTGATTGTAAATCAGTAACCACAACTACTGTTGTGAATAACTGTGATCATCATGTGGATTTCAGTTAAATATGTAGTTGTATAATGATATATTGGAATAAAACCTTATTACAATgcatattatgattattatgatgatgattattattattagtagtagtagtagtagtaatatttgTTCTCCAAAGATACTCAGCAGAAATTAATTTGCAGTGcaaacaatatacactcacctaaaggattattaggaacaccatactaatactgt

Function

GO:

id name namespace
GO:0006754 ATP biosynthetic process biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function

KEGG:

id description
K01539 ATP1A; sodium/potassium-transporting ATPase subunit alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88625 lncRNA downstream 36133 17446868 ~ 17448717 (-) False AMCG00014555
TU88592 lncRNA downstream 133878 17349436 ~ 17350972 (-) True G70898
TU88566 lncRNA downstream 200274 17284319 ~ 17284576 (-) True G70876
TU88472 lncRNA downstream 761300 16722073 ~ 16723550 (-) False AMCG00014539
TU88386 lncRNA downstream 1015622 16465779 ~ 16469228 (-) True G70731
TU88648 lncRNA upstream 99505 17600461 ~ 17615905 (-) False AMCG00014559
TU88667 lncRNA upstream 502854 18003810 ~ 18004023 (-) True G70954
TU88673 lncRNA upstream 513870 18014826 ~ 18022095 (-) True AMCG00014567
TU88747 lncRNA upstream 828241 18329197 ~ 18331100 (-) True G71016
TU88951 lncRNA upstream 1163308 18664264 ~ 18664631 (-) True G71133
AMCG00014555 mRNA downstream 22560 17447501 ~ 17462290 (-) True AMCG00014555
AMCG00014554 mRNA downstream 52664 17418457 ~ 17432186 (-) True AMCG00014554
AMCG00014551 mRNA downstream 161229 17314186 ~ 17323621 (-) True AMCG00014551
AMCG00014549 mRNA downstream 205403 17250290 ~ 17279447 (-) True AMCG00014549
AMCG00014550 mRNA downstream 243776 17170830 ~ 17241074 (-) True AMCG00014550
AMCG00014557 mRNA upstream 54711 17555667 ~ 17566646 (-) True AMCG00014557
AMCG00014558 mRNA upstream 71947 17572903 ~ 17582074 (-) True AMCG00014558
AMCG00014559 mRNA upstream 88311 17589267 ~ 17621151 (-) True AMCG00014559
AMCG00014561 mRNA upstream 254008 17754964 ~ 17808430 (-) True AMCG00014561
AMCG00014562 mRNA upstream 434210 17935166 ~ 17935714 (-) True AMCG00014562
TU87063 other downstream 5822357 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 6686703 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 8167683 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 9100626 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 9326260 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 10828783 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 11888334 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 14762211 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 15096506 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 15096506 32597462 ~ 32619149 (-) False G73127

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00000066 False 3506 mRNA 0.48 22 NC_007112.7 1712140 ~ 1731564 (+)
grasscarp (Ctenopharyngodon idella) CI01000299_04645836_04651938.mRNA True 3272 mRNA 0.47 21 CI01000299 4645639 ~ 4651938 (-)