RNA id: AMCG00014558


Basic Information

Item Value
RNA id AMCG00014558
length 1620
RNA type mRNA
GC content 0.46
exon number 12
gene id AMCG00014558
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 17572903 ~ 17582074 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGATGTTGAAGAAGCATTTAAAGTCGTTGGGGAAATGGGTATTTATCAAATGTACCTGTGTTTTCTGCTAGCGTTTCTGTTAATGCTTTATGTTGCCGCAGAAGCTGTCCTTCTTACCCTGGTGGGGTTATCACCTGCGTTTCAGTGGGATCTCCAAGGGCTGTTGGCCAATTCCAGCCTAGCCAATGTATCTTCCATGGAGGAGGGTCAGGTATTGAAACACTGGCTGCATGAGGCAAACCAAAGTGAAATACACAGACATCTGCAGTTCAGTAATCGCTACTCTTCCGTTATCTCTGAGTGGTACTTGGTAGGAGATGCAGAATATGAAGTTTCAATGGCAAACTCCTTATACTTCGGTGGTGTGCTAATAGGGGCTGTCACCTTTGGGCAACTTTCTGACATCtatggaagaaagaaaatctaCCTTATAGGCTTGGCGTTTGACACCGTTTTTGCTGTTGCCACGGCACTTGTGCCTACATATCAACTATTTGCGGTCTCCCGGTTCCTGGTGGGGATCATGAATGGAGGATGTTCAttggttgcttttgttttgctaaatgAATATGTGGGTACATCCTACTGGTCTCTCACAgGAACTCTAGGCAGTTTTTCCTTTGGTGTTGGAATAATTGTCTATGCTGCCATTGGTTATTTTATCCAGTCCTGGAGGTGGCTAGCATTTGTAGCTAATGTGCTAGCAGTGCTagtgttttttctgtcattattcattCCAGAATCTCCACGCTGGCTTTACTCTCGAAGTCGAATCAGTGAAGCTGAAAAGGTCCTCTCCTTGATCAGCAGACGAAACAAAAACTCAAAGTCCTTAATTTCTTTATCAGCCCCACCGATAGCCAAGAACAGGCAGAAAGCCAGTTCCCTGGACCTGTTCCGACACAGAGTCCTCCTCAAGCGTAGCCTGGTCATGATTCTTGTCTACTATGGTCTTACATTGAATGCTGGGAACATGGATGGAAATGTCTATGTCAATTTGGGCCTTTCAGGAGTTGCAGAACTGCCTTCTTCCCCAATTAgtttttacttaattaatcGCAAATGgtGTGGACGAAGGAGGTCCTtatcaggattttttttcttgggaGGGATAGCTTGTGTCGTAATAGCATGTGTGCCAGAAAAACAAGGAACTGGACTGTTTGCAATTGTTAACAAAATGACTCTTTCACTGCTGGGCAAGATGGCTATCAGTGCAGCCTTCAGCATTGTGTACATTTACTCTTCTGAGCTCTACCCAACAGTAGTCAGGAACGCTGGCATGGGAGTGTGCTCCATGGCATCACGGTTAGGAGGCATACTGGCGCCCTTCATCCCGTCTTTGAAATTGATACAGTGGGCCCTGCCTTTTATTGTGTTTGGGACTGCTGGTCTGTCGGCAGGGGTTCTGACACTGTTGCTGCCTGAAACCCTCTTGAAGACCCTGCCAGAGACCCTCTCAGACTTGGAACAAGACTCTCCTGATGTTGGTTACCGAAGACTTGGAGATGAAGATTTGTTACTGGAGCCAATTTGCAGAGATTCGGCAGCCCACAGCGAGTGGcaggaggatgaggatgagtTCCTCAATGCAgctgaacaaacacaaatgatgtGA

Function

GO: NA

KEGG:

id description
K08211 SLC22A15; MFS transporter, OCT family, solute carrier family 22 (organic cation transporter), member 15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88625 lncRNA downstream 124186 17446868 ~ 17448717 (-) False AMCG00014555
TU88592 lncRNA downstream 221931 17349436 ~ 17350972 (-) True G70898
TU88566 lncRNA downstream 288327 17284319 ~ 17284576 (-) True G70876
TU88472 lncRNA downstream 849353 16722073 ~ 16723550 (-) False AMCG00014539
TU88386 lncRNA downstream 1103675 16465779 ~ 16469228 (-) True G70731
TU88648 lncRNA upstream 18387 17600461 ~ 17615905 (-) False AMCG00014559
TU88667 lncRNA upstream 421736 18003810 ~ 18004023 (-) True G70954
TU88673 lncRNA upstream 432752 18014826 ~ 18022095 (-) True AMCG00014567
TU88747 lncRNA upstream 747123 18329197 ~ 18331100 (-) True G71016
TU88951 lncRNA upstream 1082190 18664264 ~ 18664631 (-) True G71133
AMCG00014557 mRNA downstream 6257 17555667 ~ 17566646 (-) True AMCG00014557
AMCG00014556 mRNA downstream 71947 17484850 ~ 17500956 (-) True AMCG00014556
AMCG00014555 mRNA downstream 110613 17447501 ~ 17462290 (-) True AMCG00014555
AMCG00014554 mRNA downstream 140717 17418457 ~ 17432186 (-) True AMCG00014554
AMCG00014551 mRNA downstream 249282 17314186 ~ 17323621 (-) True AMCG00014551
AMCG00014559 mRNA upstream 7193 17589267 ~ 17621151 (-) True AMCG00014559
AMCG00014561 mRNA upstream 172890 17754964 ~ 17808430 (-) True AMCG00014561
AMCG00014562 mRNA upstream 353092 17935166 ~ 17935714 (-) True AMCG00014562
AMCG00014567 mRNA upstream 408577 17990651 ~ 18022085 (-) False AMCG00014567
AMCG00014566 mRNA upstream 447767 18029841 ~ 18037569 (-) True AMCG00014566
TU87063 other downstream 5910410 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 6774756 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 8255736 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 9188679 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 9414313 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 10747665 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 11807216 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 14681093 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 15015388 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 15015388 32597462 ~ 32619149 (-) False G73127

Expression Profile