RNA id: AMCG00014559


Basic Information

Item Value
RNA id AMCG00014559
length 1674
RNA type mRNA
GC content 0.46
exon number 10
gene id AMCG00014559
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 17589267 ~ 17621151 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGACAGCGGCCAGTCGTCCCCTGACGCCCCTCAGCGATGTAGAGTCGGGGAGTTCGGAAGAGTTTTATCAGTCTTTACATCATGCCGAGCAGACCTTCAGGAAAATGGAGAACTACTTAAAGCAGCAACAGCTCTGTGATGTGATATTGATCGCTGGAAATCGCAAGATACCTGCTCACAGGATTGTTCTTAGTGCAGTGTCAGACTACTTTGCTGCCATGTTCACAAGTGATGTTTGTGAAGCAAAACAAGAGGAAATCAAAATGGAAGGGATTGACCCAAATGCACTCTGGGATTTGGTGCAGTTTGCATACACAGgCTGCCTAGAGCTTAAGGAAGAAACTATTGAAAATCTTTTGGCAGCTGCCTGTCTGCTGCAGCTCTCACAGGTAGTTGATGTCTGCTGCCACTTCCTAATGAAGCTTTTGCATCCTTCCAACTGCCTGGGAATCCGCGCTTTTGCTGATGCTCAGGGCTGCATTGAACTTATGAAGGTGGCACACAGCTACAGCATGGAAAATATTATGGAGGTGATAAGAAATCAGGAATTTTTGCTGCTTTCTGCTGATGAAATTCTGCAACTTCTTGCCAGCGATGATGTTAACGTTCCTGATGAGGAAACGATATTTCATGCACTGATGATGTGGGTGAAACATGATACACAGAGGTGTAAAGACTTAAGTATGCTTCTTGCCTACATTAGACTTCCTCTTCTTCCTGCACAGCTTCTGGCAGATCTAGAGAACAATGCACTCTTCAAGGATGATCTTGAGTGTCAAAAGCTGATTCTTGAAGCGATGAAGTATCATCTTCTGCCAGAAAGGAGACTGTTGATGCAAAGCCCGAGGACTAAACCCAGGAAGTCTACAGTTGGAGTGCTATATGCAGTTGGAGGGATGGATAATAGCAAAGCTGGAATTATGAATGGTAGGAGACTGCAGTTTGGAGTAGCTGTCATCGAAGAGAAGCTGTATGTTATTGGTGGGAGAGATGGCTTGAAGACTTTAAACACAGTGGAGTGTTACAACCTGAGATCAAATACATGGACCATCGTACCCCCAATGTCCACTCATAGACATGGGCTTGGTCCAATCTATGCGGTTGGAGGTCATGATGGCTGGAGCTACTTGAACTCTGTAGAAAGGTGGGATCCTCAAAGTCAGCAGTGGACATTTGTTGCAAGTATGTCCACGGCTAGAAGCACTGTTGGCGTGGCATCTTTAAATGGAAAGTTGTATGCAGTTGGTGGCCGCGATGGGAGTTCATGCCTTAGTTCAATGGAGTGCTACGACCCTCACACTAACAAGTGGAACGTCTGTTCACCGATGTCCAAAAGAAGAGGAGGTGTCGGAGTTTCGACGTGCGATGGCTTTCTGTATGCTGTTGGGGGGCACGATGCCCCTGCTTCTAATCAGAGTTCTCATCTCTCCGACTGTGTGGAAAGATATGACCCAAAAACAGACACATGGACTACTGTGGCACCGTTAAGCCTGCCTCGTGATGCTGTTGGAGTTTGTCTCCTGGGAGATAAGTTGTATGCAGTCGGTGGCTATGATGGGCAAACATACTTGCAAACAATGGAATGTTATGATCCCCAAACAAATGAATGGACAAAGATGGCATCACTGAACATTGGAAGAGCCGGTGCCTGCGTTGTTGTTATTAAGCAGCCT

Function

GO: NA

KEGG:

id description
K10442 KLHL1_4_5; kelch-like protein 1/4/5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88625 lncRNA downstream 140550 17446868 ~ 17448717 (-) False AMCG00014555
TU88592 lncRNA downstream 238295 17349436 ~ 17350972 (-) True G70898
TU88566 lncRNA downstream 304691 17284319 ~ 17284576 (-) True G70876
TU88472 lncRNA downstream 865717 16722073 ~ 16723550 (-) False AMCG00014539
TU88386 lncRNA downstream 1120039 16465779 ~ 16469228 (-) True G70731
TU88667 lncRNA upstream 382659 18003810 ~ 18004023 (-) True G70954
TU88673 lncRNA upstream 393675 18014826 ~ 18022095 (-) True AMCG00014567
TU88747 lncRNA upstream 708046 18329197 ~ 18331100 (-) True G71016
TU88951 lncRNA upstream 1043113 18664264 ~ 18664631 (-) True G71133
TU88975 lncRNA upstream 1047650 18668801 ~ 18669655 (-) True G71157
AMCG00014558 mRNA downstream 7193 17572903 ~ 17582074 (-) True AMCG00014558
AMCG00014557 mRNA downstream 22621 17555667 ~ 17566646 (-) True AMCG00014557
AMCG00014556 mRNA downstream 88311 17484850 ~ 17500956 (-) True AMCG00014556
AMCG00014555 mRNA downstream 126977 17447501 ~ 17462290 (-) True AMCG00014555
AMCG00014554 mRNA downstream 157081 17418457 ~ 17432186 (-) True AMCG00014554
AMCG00014561 mRNA upstream 133813 17754964 ~ 17808430 (-) True AMCG00014561
AMCG00014562 mRNA upstream 314015 17935166 ~ 17935714 (-) True AMCG00014562
AMCG00014567 mRNA upstream 369500 17990651 ~ 18022085 (-) False AMCG00014567
AMCG00014566 mRNA upstream 408690 18029841 ~ 18037569 (-) True AMCG00014566
AMCG00014568 mRNA upstream 493860 18115011 ~ 18179286 (-) True AMCG00014568
TU87063 other downstream 5926774 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 6791120 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 8272100 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 9205043 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 9430677 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 10708588 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 11768139 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 14642016 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 14976311 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 14976311 32597462 ~ 32619149 (-) False G73127

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000000_15794752_15824681.mRNA True 2588 mRNA 0.48 9 CI01000000 15794665 ~ 15825004 (-)