RNA id: AMCG00014561


Basic Information

Item Value
RNA id AMCG00014561
length 1086
RNA type mRNA
GC content 0.51
exon number 10
gene id AMCG00014561
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 17754964 ~ 17808430 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCAGTGATGTTTCCTGGGATAAAGAGAAACTCCAGTCTCCTAATGCACAAGGATCACAGGCCTCAGTTACTCACCCCAGCCTACCTGGACAGCATAACCTTTCAGTTAGTCACCCCCTTAATCCTCTCCAGCAGAACCACCTTCTACCCAATGGTTTGGAACTCCCCTTCATGATGATGCCCCACCCCCTGATCCCTGTCAGTCTACCTCCTGCATCAGTTACCATGGCAATGAGTCAAATGAACCACCTCAGCACCATTGCAAACATGGCTGCCGCCGCCCAGGTCCAGAGTCCTCCCTCCAGAGTGGAGACgAACGTGTACCAGACAGCCCATCTCCTGCTCCATCCCTTGAAGATGGGAGAAGACCGGGGAGCCACCCTTCCTCTCACCGGAGCAGCAGTGTGTCGAGCTCTCCCGCACGGACTGAAAGCTCTTCAGACAGAATCCGTCTTGTATGGTGAAAACCCCAAAAGAGCCAGAGTTAAGGTTAAAGAGAAGGCAGGTGTCCCCGGCAATCTGGGTTGCCCTCATAAGAGATCAGACCTGGACCTCTTTGGATCTTCTGTGAAAAGGTTTCAGAGAAATGAGACTCCACTTTGTACTCCAACTGCAAGAGACAGTTTTGAGAAGCTCTCCCTGACAGGACAGCCGTTACCTCCCGGATTCGCATCTCCTTTCCTCTTTCCTGATGGGCTATCCTCAATAGAGACACTTCTTACTAATATACAgGTTGCCATTGACAATGCGAGAGCCCAGGAGAAGCAGGTCCAGATGGAGAAAACCGAGCTGAAGATGGAGCTGTTCAGGGAACGGGAGCTCAGAGAAACACTGGAGAAGCAGCTGGCCGTGGAGCAGAAAAACAGAGCAATAATTCAAAAGCGGttaaagaaggagaagaaggccAAGAGGAAATTACAGGAAGCACTTGAATATGAAACCAAAAGGCGAGAACAAGCAGAGCAGACATTGAAACAGGCAACCTCCACAGACAGCCTCAGGACCCTTAACGATTCATTGACCCAGGAGATGGAGACTGACCGCAATAGTGGCAGAACAGATGCTGAAAGGACAATACAAGtagGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88648 lncRNA downstream 139059 17600461 ~ 17615905 (-) False AMCG00014559
TU88625 lncRNA downstream 306247 17446868 ~ 17448717 (-) False AMCG00014555
TU88592 lncRNA downstream 403992 17349436 ~ 17350972 (-) True G70898
TU88566 lncRNA downstream 470388 17284319 ~ 17284576 (-) True G70876
TU88472 lncRNA downstream 1031414 16722073 ~ 16723550 (-) False AMCG00014539
TU88667 lncRNA upstream 195380 18003810 ~ 18004023 (-) True G70954
TU88673 lncRNA upstream 206396 18014826 ~ 18022095 (-) True AMCG00014567
TU88747 lncRNA upstream 520767 18329197 ~ 18331100 (-) True G71016
TU88951 lncRNA upstream 855834 18664264 ~ 18664631 (-) True G71133
TU88975 lncRNA upstream 860371 18668801 ~ 18669655 (-) True G71157
AMCG00014559 mRNA downstream 133813 17589267 ~ 17621151 (-) True AMCG00014559
AMCG00014558 mRNA downstream 172890 17572903 ~ 17582074 (-) True AMCG00014558
AMCG00014557 mRNA downstream 188318 17555667 ~ 17566646 (-) True AMCG00014557
AMCG00014556 mRNA downstream 254008 17484850 ~ 17500956 (-) True AMCG00014556
AMCG00014555 mRNA downstream 292674 17447501 ~ 17462290 (-) True AMCG00014555
AMCG00014562 mRNA upstream 126736 17935166 ~ 17935714 (-) True AMCG00014562
AMCG00014567 mRNA upstream 182221 17990651 ~ 18022085 (-) False AMCG00014567
AMCG00014566 mRNA upstream 221411 18029841 ~ 18037569 (-) True AMCG00014566
AMCG00014568 mRNA upstream 306581 18115011 ~ 18179286 (-) True AMCG00014568
AMCG00014571 mRNA upstream 455525 18263955 ~ 18291505 (-) True AMCG00014571
TU87063 other downstream 6092471 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 6956817 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 8437797 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 9370740 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 9596374 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 10521309 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 11580860 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 14454737 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 14789032 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 14789032 32597462 ~ 32619149 (-) False G73127

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000009_01183737_01206031.mRNA True 3663 mRNA 0.41 8 CI01000009 1182091 ~ 1206857 (+)