RNA id: AMCG00014562


Basic Information

Item Value
RNA id AMCG00014562
length 549
RNA type mRNA
GC content 0.63
exon number 1
gene id AMCG00014562
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 17935166 ~ 17935714 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCGTACCGGCTGCTCTGCTCCCCACGACCCCGCTGGTCCCTCCACCTCCGATCTCAACTTCTTCAGCGACCACCTCCTCCTCGCCCTCGAccacctcctctccctctccttccgtCGCCCCGTCGGGACCCAACCTGTTTCGGTCGGAGCCGATCAGCACCACCACCAGCCCGGGCATCCCAGCCGGCAACCTGCCCGGCAAGCCCGTGTACTCGACTCCGTCTCCGGTGGAGAACACGCCGCAGAATAACGAGTGTAAGATGGTGGATTTGAGGGGCGCCAAGGTGGCTTCTTTCACGGTGGACGGTTGCGAGCTGATCTGTCTCCCCCAGGCGTTTGATCTCTTTCTGAAGCACTTGGTCGGGGGGCTGCACACCGTGTACACCAAGCTGAAGCGGCTGGAGATCACGCCGGTGGTGTGCAATGTGGAGCAGGTCCGCATCCTGAGGGGACTCGGGGCCATCCAGCCAGGAGTGAACCGCTGCAAACTCATCTCCAGGAAGGACTTCGAGACCCTGTACAACGACTGCACCAACGCCAGGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88648 lncRNA downstream 319261 17600461 ~ 17615905 (-) False AMCG00014559
TU88625 lncRNA downstream 486449 17446868 ~ 17448717 (-) False AMCG00014555
TU88592 lncRNA downstream 584194 17349436 ~ 17350972 (-) True G70898
TU88566 lncRNA downstream 650590 17284319 ~ 17284576 (-) True G70876
TU88472 lncRNA downstream 1211616 16722073 ~ 16723550 (-) False AMCG00014539
TU88667 lncRNA upstream 68096 18003810 ~ 18004023 (-) True G70954
TU88673 lncRNA upstream 79112 18014826 ~ 18022095 (-) True AMCG00014567
TU88747 lncRNA upstream 393483 18329197 ~ 18331100 (-) True G71016
TU88951 lncRNA upstream 728550 18664264 ~ 18664631 (-) True G71133
TU88975 lncRNA upstream 733087 18668801 ~ 18669655 (-) True G71157
AMCG00014561 mRNA downstream 126736 17754964 ~ 17808430 (-) True AMCG00014561
AMCG00014559 mRNA downstream 314015 17589267 ~ 17621151 (-) True AMCG00014559
AMCG00014558 mRNA downstream 353092 17572903 ~ 17582074 (-) True AMCG00014558
AMCG00014557 mRNA downstream 368520 17555667 ~ 17566646 (-) True AMCG00014557
AMCG00014556 mRNA downstream 434210 17484850 ~ 17500956 (-) True AMCG00014556
AMCG00014567 mRNA upstream 54937 17990651 ~ 18022085 (-) False AMCG00014567
AMCG00014566 mRNA upstream 94127 18029841 ~ 18037569 (-) True AMCG00014566
AMCG00014568 mRNA upstream 179297 18115011 ~ 18179286 (-) True AMCG00014568
AMCG00014571 mRNA upstream 328241 18263955 ~ 18291505 (-) True AMCG00014571
AMCG00014572 mRNA upstream 381140 18316854 ~ 18317264 (-) True AMCG00014572
TU87063 other downstream 6272673 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 7137019 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 8617999 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 9550942 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 9776576 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 10394025 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 11453576 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 14327453 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 14661748 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 14661748 32597462 ~ 32619149 (-) False G73127

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00073280 True 2412 mRNA 0.54 11 NC_007120.7 30890549 ~ 31062704 (+)
grasscarp (Ctenopharyngodon idella) CI01000009_01110684_01111118.mRNA True 918 mRNA 0.41 1 CI01000009 1110684 ~ 1111601 (+)
bowfin (Amia calva) TU104311 True 531 lncRNA 0.34 1 CM030130.1 3734677 ~ 3735207 (-)
tiger barb (Puntius tetrazona) TU104311 False 1456 lncRNA 0.51 4 NC_056707.1 15036082 ~ 15041730 (-)