RNA id: AMCG00014568


Basic Information

Item Value
RNA id AMCG00014568
length 1107
RNA type mRNA
GC content 0.56
exon number 7
gene id AMCG00014568
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 18115011 ~ 18179286 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGGAGCACAGGCGCCATTGAGAACACAATGTTAATGCTTGACGGGATGCCGGCAGTCAGAGTCAAAGCCGAGCCTTTGGAATCTGAACAAGGGTCTCCCAAAGTACACCGCTACCCAGACATGGAAGCAGTTCCGCTTTTGCTCAGTAAAGTGAAACCTGAGCCTCCTGAGGACTTGCTATCAACTGACCAGTTTCAAACGCAGACTGAGCCTGTAGACTTATCAATAAACAAAGCCAGGACCTCCCCGATGGCTGTGCTATCAATGCAGTCGTCGCCCGTTTCCACTGTGACGTCGGCCTTTTCCCCGTCGtcgtcgtcctcctcctcctcgtcctcctcctcacGGCACACCTCCTCGCCCACCGTCATCTCCTCCGTGTCCTCAGCCTCGTCTACCGGCATGCCCACAGTGTTAACACCTGGCCCTATGGTGACCTCCCCCTCAGGAGTACGGGGCCAGCAATTTTTGCACATCATCCACCCCGTGCCACCTTCCAGCCCCATCAACCTCCAGACAACCAAGCTCCCGAGCCATGTACACCGCATCCCCGTGGTGGTCCAGTCAGTGCCTCTGGTGTACACAGCCGTCAGGTCACCAGGAAACATGAACTCTACTATTATGCTACCTCTGCTGGAGGAAGGCAGGAATCAGGTCAAAGCACAAACAGACCCCAACGGCTTGTCTCCGAGACAAATCAAAAGTGACAGTGATGATGACGACCTGCCAAATGTTGACGGGGAGGGCTACCACATCACAGCCCAttctATTTCACCATTCAGTATTGAGGGCACGAGGCGCCCAAGGAGGTCTGAATCCCCCGACTCCAAGAAGCGCCGTATTCACAGGTGTGACTTTGAGGGCTGCAATAAGGTTTACACAAAGAGCTCCCATCTGAAAGCACATCGGAGGACACACACAGGTGAGAAGCCATACAAGTGTACCTGGGAAGGATGCACATGGAAGTTCGCCCGCTCTGACGAGCTCACCAGGCATTACCGCAAGCACACAGGGGTGAAGCCCTTCAAGTGTGCGGACTGTGACCGCAGCTTCTCGCGCTCCGACCACCTGGCCCTGCACCGCCGCCGACACATGCTGGTGTGA

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG:

id description
K09205 KLF8_12; krueppel-like factor 8/12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88673 lncRNA downstream 92916 18014826 ~ 18022095 (-) True AMCG00014567
TU88667 lncRNA downstream 110988 18003810 ~ 18004023 (-) True G70954
TU88648 lncRNA downstream 499106 17600461 ~ 17615905 (-) False AMCG00014559
TU88625 lncRNA downstream 666294 17446868 ~ 17448717 (-) False AMCG00014555
TU88592 lncRNA downstream 764039 17349436 ~ 17350972 (-) True G70898
TU88747 lncRNA upstream 149911 18329197 ~ 18331100 (-) True G71016
TU88951 lncRNA upstream 484978 18664264 ~ 18664631 (-) True G71133
TU88975 lncRNA upstream 489515 18668801 ~ 18669655 (-) True G71157
TU88981 lncRNA upstream 507212 18686498 ~ 18687346 (-) True G71160
TU89001 lncRNA upstream 671438 18850724 ~ 18851111 (-) True G71174
AMCG00014566 mRNA downstream 77442 18029841 ~ 18037569 (-) True AMCG00014566
AMCG00014567 mRNA downstream 92926 17990651 ~ 18022085 (-) False AMCG00014567
AMCG00014562 mRNA downstream 179297 17935166 ~ 17935714 (-) True AMCG00014562
AMCG00014561 mRNA downstream 306581 17754964 ~ 17808430 (-) True AMCG00014561
AMCG00014559 mRNA downstream 493860 17589267 ~ 17621151 (-) True AMCG00014559
AMCG00014571 mRNA upstream 84669 18263955 ~ 18291505 (-) True AMCG00014571
AMCG00014572 mRNA upstream 137568 18316854 ~ 18317264 (-) True AMCG00014572
AMCG00014570 mRNA upstream 138799 18318085 ~ 18323699 (-) True AMCG00014570
AMCG00014578 mRNA upstream 288124 18467410 ~ 18468282 (-) True AMCG00014578
AMCG00014577 mRNA upstream 296257 18475543 ~ 18477922 (-) True AMCG00014577
TU87063 other downstream 6452518 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 7316864 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 8797844 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 9730787 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 9956421 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 10150453 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 11210004 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 14083881 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 14418176 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 14418176 32597462 ~ 32619149 (-) False G73127

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00073278 True 1826 mRNA 0.49 6 NC_007120.7 30720048 ~ 30783892 (+)