RNA id: AMCG00014570


Basic Information

Item Value
RNA id AMCG00014570
length 2297
RNA type mRNA
GC content 0.39
exon number 7
gene id AMCG00014570
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 18318085 ~ 18323699 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGAGTTTCATCCAGTACTCTTGACAGCTATGCATATATAATCGTTTGCACAGTTATATTAGCTATCTATTTAATCATTTGTCCTACTAGCTTGTGAGATAAACCTAAATCATTCtacatttttctaattaaaaacatcaacaattcCTGCTCTGATATATGCACTGCTGGAGAGTTCGACTGATGACGTCATTGACCGCTCTTAACCAACCAGCAGAGAGAAGGCACTCTGTACCCGGAAGTGTAGCTGCTGATCGGAGATGTTTGAACTGGGGCAATCTGCTGattttgaCCACACTCTTGAAAGCATTGGAAGGTTACCTTCAGACCTGTTTGCTGAAACATGTCAGCAGGTTCTGATTCACCTTCAAGGCCGGATACCTGCTGTGGATTCAGCTAATATCTGTGATAGACTTCAAAATGCTGGTATCAGATTGGATTTGGCTGCTCTTGAAAAGATCATTCAcatggttttattcattttcagAACTGCAGCAAAAAACAATTTGTCTTCAGAACAGCTAGTCACAGAATTGAGTGAAAGAAGCAGCAAGTGGTCCAAACAATCTCTTCAAGTCATTCACAAGCTCTGGAATGAACAGGGAAAACTGGTCTTAGTGCATCAAGATACAAAAGCCATGATTAATGTTGGAAAGCTGGTAGATTTGCAGTGGAGACTTGGGATGGCTGTGAGCTCAGACACCTGCAGGTCTCTCAACTATCCATATGTGTCCATGACATTAAAAGTAGCTGACTCTGCAGGACAATTATCAATCAAATCTTTTGAAATGACTATCCCACAGTTCCAGAACTTCTTCCGACAGTTTAAGGAAATGGCAGCTGTTTTGGAAACGGTATAATGAGAATGCAATGGGAATTCTAAGCATTCTGTTCAAGTCTGACCCCTCTTGCAATGGTAACAATAATGAGAATGTTTACATGTATCAGTAGTTGCAAGGTCACCTTTGTATAACTATTTTGAACTAACCTTGTGTTTCATTGCTCAGTGGGCATAGCTGGGATATTTAAAGGGGAgaaacaaattatgtattttcatttgtactaaatactaaaatgcatgaaaattgTGTAATTTGATAATGCTATTGATAATGACAATTTTTGTCCGCCTCAGCATTCACGTTTATGACAAGCTTAACGACAGAAAGtgtgtataatacataatatttttgttttcatatgtatGATACTATGTTATGTACATCTCTTTAGTGTTACCCTGAATGTGTCCCCAATGGTActgtgaaaaaacatttaaaactgtaaaaggaTCTCCATTTTCCTGTTTTATACCAATGTCAAACAAGTGTGAATGAATATGCATTCCCCACTATGATATCTCTTGCATACTATTTTAGAATACACTGATGGCCTGTTATCAgtcatctttaaaaacaattcccCCATAAGGATTTATACACCCCCCAAAATACTGGTGCCACTGTTTTCTGGGTATTTAACCCTCATTATACCATGGATTGTCATCTGGATATTGGCTTCATGTTCTGCTTCTTTGGTTTCTGCTCCCAAGTCAGCAGACTCTAGCCCACTTAAATGGTATGGCGAGAACAGAGGCTGTGCCCTGGCGCCTGCATGAATGAAACCGAACGAGGGCTCTGATAGGAGCTGCTGTTCCTATGCCAGTCCCTGTGGGCCGACACCACGTGTTCACAGAGTGGTGCTAGTGGGATTACATTGACTGCATATTTGATCTATTTCTGGGAGATGGCTTGATACTTAAGGCATCCTGTTACAGGCCTCAAGGAACTCCAGGAAACCTCAATCTCAGCTGAGAGTCCTAATACTGTGTAATGTTTCAAAGCCATTAGAATCCACAGGACCAAGAAGTAGATTTCATTATTGTCTGTTATAAATTAGCTTTGTAGAGAAAGAATAGGGCAGTACACGCCGACGGCTAACTTCTGTGTGCTTGTACTGCTCTTGTACTACAGGGCATATGGCAAATAATTGCTATAGCATTGTTTTAAGTAGAGGAGGAAAGCTTCTATTAAGTGCAATAACAGCTGCTAAGATAATGCATGATTTAAATGGGAATTTAATGGTTATTGAAGTGCCTTTTGCTCCTTCCTCTGCTCATTTTGGTCtgatctaaataaataaataaatatctgggCCATCTTTGATGTACTGTAGATATCCAAGAACTTAGCTTAGCATACAGCAGCTAGCTTCTTGCAACTTAACATattctaaatgtgtgtgtgtgtgtgtgtgtgtgtgtgaacaccAGTGCATATTTAGCACCACTGTGAAGG

Function

GO: NA

KEGG:

id description
K22562 COMMD6; COMM domain containing 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88673 lncRNA downstream 295990 18014826 ~ 18022095 (-) True AMCG00014567
TU88667 lncRNA downstream 314062 18003810 ~ 18004023 (-) True G70954
TU88648 lncRNA downstream 702180 17600461 ~ 17615905 (-) False AMCG00014559
TU88625 lncRNA downstream 869368 17446868 ~ 17448717 (-) False AMCG00014555
TU88592 lncRNA downstream 967113 17349436 ~ 17350972 (-) True G70898
TU88747 lncRNA upstream 5498 18329197 ~ 18331100 (-) True G71016
TU88951 lncRNA upstream 340565 18664264 ~ 18664631 (-) True G71133
TU88975 lncRNA upstream 345102 18668801 ~ 18669655 (-) True G71157
TU88981 lncRNA upstream 362799 18686498 ~ 18687346 (-) True G71160
TU89001 lncRNA upstream 527025 18850724 ~ 18851111 (-) True G71174
AMCG00014572 mRNA downstream 821 18316854 ~ 18317264 (-) True AMCG00014572
AMCG00014571 mRNA downstream 26580 18263955 ~ 18291505 (-) True AMCG00014571
AMCG00014568 mRNA downstream 138799 18115011 ~ 18179286 (-) True AMCG00014568
AMCG00014566 mRNA downstream 280516 18029841 ~ 18037569 (-) True AMCG00014566
AMCG00014567 mRNA downstream 296000 17990651 ~ 18022085 (-) False AMCG00014567
AMCG00014578 mRNA upstream 143711 18467410 ~ 18468282 (-) True AMCG00014578
AMCG00014577 mRNA upstream 151844 18475543 ~ 18477922 (-) True AMCG00014577
AMCG00014576 mRNA upstream 161562 18485261 ~ 18487280 (-) True AMCG00014576
AMCG00014579 mRNA upstream 165851 18489550 ~ 18557288 (-) True AMCG00014579
AMCG00014585 mRNA upstream 316113 18639812 ~ 18644670 (-) True AMCG00014585
TU87063 other downstream 6655592 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 7519938 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 9000918 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 9933861 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 10159495 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 10006040 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 11065591 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 13939468 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 14273763 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 14273763 32597462 ~ 32619149 (-) False G73127

Expression Profile