RNA id: AMCG00014574


Basic Information

Item Value
RNA id AMCG00014574
length 4574
RNA type mRNA
GC content 0.51
exon number 21
gene id AMCG00014574
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 18374644 ~ 18395600 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTTGCCCGTAGGACTCGGTCCATCCACAACCCTGTGGACCTCACAAGTTTGACTGCAGAAAGTAGGGAAGACTATAGCTTCACCCCAGAGCCTGAAAGCAACCTAGTTATCCAGCCCAGGCGGGGCGAGTCGGTGACCCCAGATATTAAGAAAGATGACCTGCTTTTCCGTAAAATCCATCTCCGCCCTCAGAGAAAACACCCCCTTTCTGGAGCTCCTGATGTGTACCATGCTGTCCCTGTCCCAGAGCCATGGGCACTGCCACCAAGCCTCAGGTCCAAACTGCTCTGCAACCCCAATCCACCCATTCCTGAAGAAAAGGCTGAAGAGGATGAAGAGAGACCATGTACTCTGCATCCCAAAACAGATGACATGTTGCTTCGCAAGCTGGGGGCGGTGCAGCCCCAGGATTCAGCCCAGTTAATGCCCTCCGTTCCCACTTCCTGCAGTGAGGATGACTTGCAGAAATGGAAAGCGATTCGAGAAGCTAGCCAGCTGAGATACAAGAAGAAGCTAATGGTGGAGAGACTGCGGCAAATGTACCCTGCTGCCGACGGGAGCAAATCTATGAATGATGTAACACAGGAGGCTCCAGTTGCCCGTCAGTTTCGCTTTGAAGAGCTGCAGAAGATCAGGGAGATGGTGAAGGACAGTGATGACAAGTGGCAGGATGATCTTGCCAAGTGGAAAAATCGTCGCAAGAGCTACACTTCTGACCttgtgaaaaagaaagaagaaagggaaCAAATTGAGTTGGTCTCAAACAGTGGAGATACAGGCAGAAAAACAAGGACCTTCCGAGACATGCAGGAGGCGAgGGAGGACCGACTGCAGAGGACTTCTCAACAGAGCAAGCCGGCGTCTGACGGCAGCGACCTTCACTCATCAAATGAAGACGTGTTCACCGAGCAGAAACCCCGCTCCAGGACCCTGCCTCAGAGAAGCTACACTGTGGATGTAGACAATCCTTCCACTGGCTCAAACAGAGTAGCAGCCCCTTTCACCGCTTCTCGGCCAGCTCCGCAAGGCAAAACGGTCACCTCCACAACCAGTGGCACCTTGGTTACATCCTCCACTGTGCGATCCACATCTAAGGACCCAGCGGTTACCTCCTCCATCAAAACCACCACAGTTACCACAGGCAAGACCGATTTGCCAGACCATCCCACCCCTGGCACAACCAGTAAAGCCACTGAATTCAAACGCCCTTTACAGAAGCCATCAGAAGAACAGACCTCTGTTCCTTTGTATAAACACAATTCAATGGATACAAAGCTGGGGGTGGCTCGGGTTTCAGCTTCCCTCCCCAGAAGCTACCAGAGACCTGATACTTCACGGCTAACCTCCGTAGTTACGCCAAGACCTTTCGGGACACAAACAAGCAGACTTTCATCCCTTCCCAGGACTTCTGCTATGGACGATGCACATAACCGTTTTaatggagagacagacagctcTCAGAAGTCCAGCGTGCCCAGTGTCTACAGCAAATTCATGACGCCAGAGGAGGATGCCCGGTCCCAGTCCAGCTCCGTTCTGAGCAGcaatgaagaggaggaggaggaggaggaagaggatgtGAAAGGCCCAGTGCCTGCCTCCTTACCTGCCACAAAACCTGCCCTGGCCCCAGCACCAGCATCTGAGCCAGTGCCAGTGCCTGCCCCGGTACCTGCGTCTGCGCCAGTGCCTGCGCCAGTGCCTGCGCCAGTGCCTGCGCCAGTGCCCCAGAAAAGAGGCAGTCTACTTGACTTGAAGCCTGCTGTTCCCATGAGCTCTGAAACTGCGCTGCCTGCCCTGGTGAGAGCTACATCAAAGCCACCAGAAGCCAGAGTGGCTCCCCAGGAGCAGTACAGCGACATGAGAATCATTCTGAACCAGAAACCGAACAGCGGTCGAGACTTTGGATTCAAAACCAGCTGGGACTCTGCTGGAGCCTATGTTAAGTCCATTGATGCAGGCAGTCCAGCTGAGCTGTGCCAGCTACAGGTCAACGATGAGATCCTCACTGTGAATGGTCATGACGTCTCGGACATGGACTACAGCCAGTGGAAGGAGAGCCTTGACAAAGCACTGCAGAACGGAGCCCTTGAGATGGACATCCGTAGATATGGCAAGAAAAGTTCTCCTGAAAATTACATCAGCACCAGCACAGAAACTGCTTCCCACGAATCCTCAAAGAAGACTGTGAATGCAGATCTCGGCCACCAGCCTGTCCGTGATGTGGGGTCTAAAGGACTGAATGGTGGTTTCCGTGAGGAATCTGTGACCATAAGAAATAAAGAATCTGAACCAATTTCTTTGAAAAACTTAAAAAGGAGATCAGAGTTTTTTGAACAAGgaGGTTCGGAGTCGGCAATATCAGATgaGAAGTACAGACGAGAGCAGGAGAAGCTCAACGAGGAGTGGCGTCGAGCCCAGCAGGAAGCAGAGAAGGAGGGGACCAAGTACTATGAAGAGGAGCGCAAGATCTTAGAcgttaaaaccaaaacaacccCTCGATCCCCAGCCTCGCCTCTACGCCAGCCTGTGCCCCCATGGGAAGACCACCAACACCTGGGAGAGGAGCAAAACAGGCTGGCCGAGGAGCAGGAGGCCGCCAGGCGCCAGGAGGAGGAGGCCCATTGGCTGcggcagcaggagcaggaggctgcggaagaagaggagaggaagaggagacagaagcagcagcagcaggagcagcagcagcgtctggaggaggagaagaggcgGCGGGAGGAAGAGCAgcgggagaaggagaggaagcagagagaggaagagcagcGCCGACTGGAGGAGGTGAAACGCCGGCAAGAGGAGGAGAGACGACGCCAGGAGATGGTTGAGGAACAGCGTAGAGAGCAGGAGAGGATTAGAGAACAGGAGAGGATCAGGCAGCAGCAACCACAGCAGCAGTGGTCTGATGAATCCTATGGGTTCTCTAAAATCGTACCTGAAATTGCCAAGTCAGACAGgaacaAGTCCAAGTCTACTTCAGAGCTCGACGATGTTTACACTACAGATGGCAgggGTGCACAGAGTAGACACTGGGGCATTGCCCAGTGGCTGCTAGATGAGGAATGGAAGCGAAAGAAAAGCGGGAAAGTCCAGAGGATGGTGGCAGTGTCTGAGCTGGAGGCTGAGAGACAGCAGATTGTAAATCTGATGAAATACGCTGACCCCGAGAGAGCCAGCAGCGGTGCCCCGGATGGCTCCTGGAGCAGAGATtcacagaagaagaaggagCAGCAGCTGTCTCTGGCAgagcaggagagacagaggatCATCGAcgagatgaagaagaagaaccAGCTGCTGACTGATAGCAGCTGGATCAGGCAGCGCAGTGCCAGCGTGAACAAGGAGCCCGTCAGCCTGGCCGGGCCGATGAGGAGAGGCGAGTCTCTTGACAACCTCGACTCCCCTCGATCAAGCTCGTGGAAGCAGCCTCCTTGGGCGTCTGGCTCGCCATCCTTCTCTTCCTCTGGTCAGGAGTTAAGCCGCACCACCCCTGCACTGTCCACCTCCAACCGCAGTTACCTTCGCTCACCCTCCTCCACCCTGCCGGCGTCCCTGTCCACTGGCTCTCTGAAGCAGGGCCCCTGGAACCAGCCTTCCTTCTTACAGGCTGCTGAGCACTCATCACACTCCCAGTTGCAGCAGCGCAGCAGTGTATCGATTGCGGCTCGGACCTTGGAGGCTCAGAAGCCGGAGCTGAAGTCAGAATACGAAACCGCCAGCTCTACTGCAACAACTGCTATGTCCGATTTAAAACTGGACAGCCCACTAACATGTGATGTGAGCTTTGGAAAAAACGACCCACTGCAACAGATTGAAGAAGAAATGTctgagaaaattaaatgaatgttgCAATAATGACTACAATTAGACCATGACCTTATATATATTACAtcctctatatatataatatgatatgATTCTGTAGCACATAATTGTATAATTCATTTGTGACCTTTTATTGCAAAGAATAGGCGTCATAGGATGTCTTTATACTAGAATATTGCATTAAGCTTGTACAGATTATATGAGGGATATGCATGTATAGAAGTTTTATTAGATATTATACTTTTGTCTGGTTGATAAATCATTCTGGTGACCTTCAGCTGGTATGAAAGTAGCATTTGTTAATTTGTCCATATTAAAGGTATTTGAAACTTGCTATTGTATTGCCTCCTCTAGAGCTTAGGGTTTTTTCCTCAAGATATTTCCTTGCGAGGTTTGATTGTGTGATGTCTTTCTGGTCACATTATCTAAAATGTgcctttgtgatttattttgtgagggTGAAagatttattatatacacaatGGCTTACATAGAGTATTTAAACTATTGACTTGAATGGGGAGAGTTCTTGTGgacaggctttttgtttttgtttttcattttcattgagatttattaaatttgatttgTGGGAACAAGGATTTTGCTTAGAAAAACAAGTTTATAACTGGAATCTAAGCAAATTATACATTGTTCGGTgatgtttgtaaataaaattaccaaatctgcatcctgtgtgtgtgttttatacaaCTTCAATGGAA

Function

GO: NA

KEGG:

id description
K06084 LMO7, FBXO20; F-box protein 20

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88649 lncRNA upstream 723642 17650771 ~ 17651002 (+) True G70938
TU88613 lncRNA upstream 884037 17489826 ~ 17490607 (+) True G70908
TU88604 lncRNA upstream 887594 17418439 ~ 17487050 (+) False AMCG00014553
TU88599 lncRNA upstream 921277 17403511 ~ 17453367 (+) True AMCG00014553
TU88591 lncRNA upstream 1023692 17349436 ~ 17350952 (+) True G70897
TU88777 lncRNA downstream 69619 18465219 ~ 18468335 (+) True G71036
TU88779 lncRNA downstream 81443 18477043 ~ 18478028 (+) True G71038
TU88954 lncRNA downstream 292948 18688548 ~ 18692633 (+) True G71136
TU89012 lncRNA downstream 505625 18901225 ~ 18902161 (+) True G71183
TU89082 lncRNA downstream 652358 19047958 ~ 19048172 (+) True G71237
AMCG00014569 mRNA upstream 42230 18324270 ~ 18332414 (+) True AMCG00014569
AMCG00014563 mRNA upstream 294304 18070534 ~ 18080340 (+) True AMCG00014563
AMCG00014564 mRNA upstream 307462 18038108 ~ 18067182 (+) True AMCG00014564
AMCG00014565 mRNA upstream 344748 17949560 ~ 18029896 (+) True AMCG00014565
AMCG00014560 mRNA upstream 594563 17779565 ~ 17780081 (+) True AMCG00014560
AMCG00014573 mRNA downstream 74951 18470551 ~ 18475184 (+) True AMCG00014573
AMCG00014575 mRNA downstream 82809 18478409 ~ 18480032 (+) True AMCG00014575
AMCG00014583 mRNA downstream 190834 18586434 ~ 18609444 (+) True AMCG00014583
AMCG00014580 mRNA downstream 214960 18610560 ~ 18624589 (+) True AMCG00014580
AMCG00014582 mRNA downstream 230959 18626559 ~ 18632690 (+) True AMCG00014582
TU88725 other upstream 100284 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 926191 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 1905531 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 2241842 16129525 ~ 16132802 (+) False AMCG00014508
TU88058 other upstream 2694856 15675631 ~ 15679788 (+) False AMCG00014490
TU89430 other downstream 4459742 22855342 ~ 22855646 (+) True G71525
TU90165 other downstream 9439903 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 9473103 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 9906773 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 11455850 29851450 ~ 29851821 (+) True G72605

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00074147 False 754 mRNA 0.47 7 NC_007120.7 21904611 ~ 21912227 (-)
grasscarp (Ctenopharyngodon idella) CI01000009_09435601_09439347.mRNA True 980 mRNA 0.48 8 CI01000009 9435601 ~ 9439361 (+)