RNA id: AMCG00014578


Basic Information

Item Value
RNA id AMCG00014578
length 873
RNA type mRNA
GC content 0.65
exon number 1
gene id AMCG00014578
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 18467410 ~ 18468282 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTTTGGCAGACGCCTCGGGTGGGCTCTCTAACGGCGGGGACTCCGGCTCCCCTTTCTCGGAGATCATCGAGCTCAATGTGGGGGGGCAGGTGTACGTGACCCGGCACACCACCCTGGTCGCCGTGCCGGACTCGCTGCTGTGGAGCATGTTCAGCCAGAAGAGCCCGCAGGAGCTGGCGAGGGACAGCAAAGGGCGCTACTTTCTGGACAGGGACGGCTTTCTGTTCCGCTACATCCTGGACTACCTGCGGGACCTCAACCTGGTGTTGCCCGACTACTTCCCGGAGAAGTGCCGGCTGCAGAGGGAAGCCCAGTTCTTCCAGCTGCACGACCTGTCCCAGCGCCTGAGCCCCAAGGTGAGCAAGGACAACTCCCTCAGCGAGGAGGTCTGCCCCGGCGACCCGGACGAGGCGGCGGCGTTCGCGGGCTCCGGCGCCGGCTGGGACCCCTCCCGCCAGGCGACGCCAGCGGGCACCGCCAACCCCCGCTCCCCGTCGCTGGAGTCCAAAAAGTCGGGCTACATCACGATCGGATACAGGGGCTCCTACACCATCGGCAGAGACACGCAGACCGATGCCAAGTTCAGGAGGGTGGCCAGGATCACGGTGTGCGGGAAGACCTCTCTGGCCAAGGAGGTGTTTGGAGACACGCTGAACGAGAGCCGGGACCCCGATCGGCCGCCGGAGAGGTACACCTCCAGGTACTACCTGAAATATAACTTCCTGGAGCAGGCGTTTGACCGGCTGACGGAGGCCGGCTTCCACATGGTGGCCTGCAGCTCCACGGGCACCTGCGCCTACGCCAGCAGCGACCCCAACGAGGACAAGATCTGGACCAGCTACACGGAGTACGTTTTCTGCAGAGACTGA

Function

GO:

id name namespace
GO:0048814 regulation of dendrite morphogenesis biological_process
GO:0051260 protein homooligomerization biological_process
GO:0006811 ion transport biological_process
GO:0021986 habenula development biological_process

KEGG:

id description
K21918 KCTD8_12_16; BTB/POZ domain-containing protein KCTD8/12/16

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88747 lncRNA downstream 136310 18329197 ~ 18331100 (-) True G71016
TU88673 lncRNA downstream 445315 18014826 ~ 18022095 (-) True AMCG00014567
TU88667 lncRNA downstream 463387 18003810 ~ 18004023 (-) True G70954
TU88648 lncRNA downstream 851505 17600461 ~ 17615905 (-) False AMCG00014559
TU88625 lncRNA downstream 1018693 17446868 ~ 17448717 (-) False AMCG00014555
TU88951 lncRNA upstream 195982 18664264 ~ 18664631 (-) True G71133
TU88975 lncRNA upstream 200519 18668801 ~ 18669655 (-) True G71157
TU88981 lncRNA upstream 218216 18686498 ~ 18687346 (-) True G71160
TU89001 lncRNA upstream 382442 18850724 ~ 18851111 (-) True G71174
TU89007 lncRNA upstream 406323 18874605 ~ 18878253 (-) True G71179
AMCG00014570 mRNA downstream 143711 18318085 ~ 18323699 (-) True AMCG00014570
AMCG00014572 mRNA downstream 150146 18316854 ~ 18317264 (-) True AMCG00014572
AMCG00014571 mRNA downstream 175905 18263955 ~ 18291505 (-) True AMCG00014571
AMCG00014568 mRNA downstream 288124 18115011 ~ 18179286 (-) True AMCG00014568
AMCG00014566 mRNA downstream 429841 18029841 ~ 18037569 (-) True AMCG00014566
AMCG00014577 mRNA upstream 7261 18475543 ~ 18477922 (-) True AMCG00014577
AMCG00014576 mRNA upstream 16979 18485261 ~ 18487280 (-) True AMCG00014576
AMCG00014579 mRNA upstream 21268 18489550 ~ 18557288 (-) True AMCG00014579
AMCG00014585 mRNA upstream 171530 18639812 ~ 18644670 (-) True AMCG00014585
AMCG00014588 mRNA upstream 227793 18696075 ~ 18709409 (-) True AMCG00014588
TU87063 other downstream 6804917 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 7669263 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 9150243 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 10083186 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 10308820 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 9861457 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 10921008 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 13794885 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 14129180 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 14129180 32597462 ~ 32619149 (-) False G73127

Expression Profile