RNA id: AMCG00014580


Basic Information

Item Value
RNA id AMCG00014580
length 2843
RNA type mRNA
GC content 0.47
exon number 7
gene id AMCG00014580
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 18610560 ~ 18624589 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCACAGTGCGCTGGCAGCGCTGCTCGAGTGGATCCGCTTAATGCACAAATCTCAGTGAAGCCAACGGCACGACCACCATTTTTCACCAGTGATGCATATATATTGATGTGTAGTCCCCCCCTAGTCCATGGAAGCTGCCGTGCTAAAGCCGCAAATGATGGCGGATGTTAACTGCAACAATAACGCTGTAAACGCCGAGCTGGAGGTGAAAAAGCTGCAGGAGCTGGTGCGCAAACTGGAAAAGCAAAACGAGCAGCTCCGGACCAGGGCGAACGCGGTGAGCAGCTGTACTGTCAGCCCGCATATGCTGCAGTCTCCCCCGGCCTGTCTGCTGGGGAGCCCCGGGGGAGCCGGCGGAGTCAGCTCGGTCTTCACGGGGAGTTACTGCATCCCCAGCCCGGTGCCGACGCTCTTGTGTCCGGCCGCTATCGGTCCCTACTGCCCGTCGGACGACCAGTACCTGTATTTCAATGCGCAGTCTGCCGCCGGCGCGGAGTCGCAGGAGGTCTGCAGCCGCAGCTCGGAGCCCACCATCCTGGATGAGGTGGAACTGCTGGACCTAGATTCGGTTTTCTGCAGCGAGGAGAAGGAGGATACCTGGCTGTATGTGTCACCGAAGGCAAAGTTTACTTCTGAAGAGCGACACCTCAGCCCCCTTCAGTGGTGCAGGCAGGTGCTAGATAACCCCCGGCCTGAAATGGAAGCTGCAAAACGCTCTCTCTGCCTAAGACTTGAACAAGGGTTTTCCAGCAGGCACCCTCCCCTGAGTCGGCAGTCTTCCATTGACAGTGAGCTGAGCACGTCTGAACTGGAGGATGACTCAATCTCCATGGGATATAAGCTGCAAGATTTAACTGATGTGCAGATAATGGCACGACTTCAAGAAGAAAGTCTTCGTCAGGACTACGCTTCGACGTCGGCGTCCGTGACCAGGCGCAGCTCCAGCTTTTCCTTCCACTCTGGGCGGAAGGGGGCCGGCAGTGACCTGGACTACGACCAGTACAGCCTGGACGACGAGGAGGATTACGACCACCTGCCGCCCCCCCAGCCCCGCCTCACGCGCTGCACCCCCCTGCACAGAGGCCTCCCCCATTCTCAGACTTTCTCCAGCATCCGAGAGTGCCGCCGGAGCCCCAGCTCGCCGTACTTGAACAGCTTCAGTTACCAGCAGTACTCCACCCCGACGACGCCAGTGTACACCCCTGACTCGCAGCCAAGCTACAGGACCGGCACAGATAAACTGAGGAGAAGCATGCCTAACCTGGCCCGTATGCCCAGCACCACCAGCCACTCCAGCCACACCAGCTCCCCCTCCTCTTTGCAGCATCGTGTCCACAGTGTGGGCAATTTCCCTGTGCCTATTAGGCAGTCTCTGAAAGCCACTGCCTATGTCAGCCCCACTGTTCAGGGCCCTGTGGGGATGCCCACCTCCGTCAGTTTACACTCCATCTCCAGCAGTGGCATCCCTCTGCCTAACAAGCCTGTAACACCCGCATCAGCGGGCCGCAGCGCTCTCCCCAGACCCGCCTCCGTCATCGGGGGCAGCAGCATACCCCGGAGCAAGATAGCACAGCCTGTCCGGAGttTACTCCAGCCTCCGAAGACACTATCAGCACTCAGTACTCTCCGAGATGGCAGCTGGCGTGATGGTTGCTACTGATACAGGGTATATTGGAACCAGGAACTTGAAGATACAACAGTATTAAGTGCCCAGCTGGCTGGGACAGGTTGATGTATCACAAAGTGTTCTTGAAATCAAGAAACATTTGACTGTTGCACAGCAAACTCTGAGGTCTAGTTTTCTTACAAAGGAATCTGAAATGCTTACCTAATTACGGTTCAACTGAGGTACACTCGCTGTATGCATTGCAATAATGCTACTTTTACAGTTTGCAATATtctatcatatttttaaaacaaagcattttagCCAAAAAGACAAAATAGGGCATACTGGTTTAAACTGTTTACAAGATCATGCTTACAACTAATGTTACTAATagttattttgtcattttggaACTTTTTAATAATGAAGACTGAGCAACGAATGTCTGAACATGAGATTTTTTAAGAACtaatacaatatgtattatcTTTGTAATGTGGTGCCTATTGTATAGTGTTTAACTTcctttttatgtgttttgtttgctgttccCTCTGCACTTTGAGTTTTACGTTcactttaaattgtaattttatgttTAAGCATGGATTAAATCCATATAATATCACCTTCCATTTTGAACACATGAGTGTTTCGGAAGTATTTTCACAGATTTAGCAATAGAATGTTtgtcattaattcatttaaatgttaatttatgttCGTCTTCATTCTAcgtatttaatttattggttttCAAGATAGTGTTTTTAAGTGCATTGCAAGTCTTCTGAAATGACTTTCTTTCCCTATTgtcaaataaacactttaatgaTGTTTATTAACTGTTGTATGGGAATGAGcaggttttaaaacaaaaataaaaactttcaagTTACTTTGCtctgtaaatgttattttcaatgacCTTATTTGAAATTGGTAATTCTTGTTGCCAACTGtcggatttgtttttattttcctaagaTGTAATGGCTAAGGGTTAACCCACTAGCAATATAAAACTCCTTTACACCGccttgtgaaatgtttaaattttcAGATTTGTGTACCCACCCAagctttgaatttgaatatccATACAATAAATGCATAACAATTAAGCAGTCTTACAAATGCAATGCTATAGATGTTTATTCTAAATTTGTGGTTCTACATTGCAGTATTAAAAGGAAATGATTAACACAACTGGTCCAAATAcaacaattaaat

Function

GO: NA

KEGG:

id description
K16580 SLAIN1_2; SLAIN motif-containing protein 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88779 lncRNA upstream 132532 18477043 ~ 18478028 (+) True G71038
TU88777 lncRNA upstream 142225 18465219 ~ 18468335 (+) True G71036
TU88649 lncRNA upstream 959558 17650771 ~ 17651002 (+) True G70938
TU88613 lncRNA upstream 1119953 17489826 ~ 17490607 (+) True G70908
TU88604 lncRNA upstream 1123510 17418439 ~ 17487050 (+) False AMCG00014553
TU88954 lncRNA downstream 63959 18688548 ~ 18692633 (+) True G71136
TU89012 lncRNA downstream 276636 18901225 ~ 18902161 (+) True G71183
TU89082 lncRNA downstream 423369 19047958 ~ 19048172 (+) True G71237
TU89148 lncRNA downstream 593728 19218317 ~ 19222919 (+) True G71283
TU89156 lncRNA downstream 593728 19218317 ~ 19222919 (+) False G71283
AMCG00014583 mRNA upstream 1116 18586434 ~ 18609444 (+) True AMCG00014583
AMCG00014575 mRNA upstream 130528 18478409 ~ 18480032 (+) True AMCG00014575
AMCG00014573 mRNA upstream 135376 18470551 ~ 18475184 (+) True AMCG00014573
AMCG00014574 mRNA upstream 214960 18374644 ~ 18395600 (+) True AMCG00014574
AMCG00014569 mRNA upstream 278146 18324270 ~ 18332414 (+) True AMCG00014569
AMCG00014582 mRNA downstream 1970 18626559 ~ 18632690 (+) True AMCG00014582
AMCG00014586 mRNA downstream 12117 18636706 ~ 18638604 (+) True AMCG00014586
AMCG00014581 mRNA downstream 21271 18645860 ~ 18659061 (+) True AMCG00014581
AMCG00014584 mRNA downstream 37619 18662208 ~ 18667126 (+) True AMCG00014584
AMCG00014587 mRNA downstream 44217 18668806 ~ 18674332 (+) True AMCG00014587
TU88725 other upstream 336200 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 1162107 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 2141447 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 2477758 16129525 ~ 16132802 (+) False AMCG00014508
TU88058 other upstream 2930772 15675631 ~ 15679788 (+) False AMCG00014490
TU89430 other downstream 4230753 22855342 ~ 22855646 (+) True G71525
TU90165 other downstream 9210914 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 9244114 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 9677784 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 11226861 29851450 ~ 29851821 (+) True G72605

Expression Profile