RNA id: AMCG00014583


Basic Information

Item Value
RNA id AMCG00014583
length 2186
RNA type mRNA
GC content 0.42
exon number 15
gene id AMCG00014583
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 18586434 ~ 18609444 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGAAATCCAGAGACCGTGGTAGATTCACACAGAAGAATGGGCGTCTAGAGAATGAGAAAAGCCACTTTTCTGGTTTCAGGCGCTGCCAGCTATTTTGCCTCAAGACACACCCTCTGTTCCACCTTGTGTCTCCTCCCTGGGAGATACAGATACAGTGAGTAAGAGGGAACGTGAGACAGGTGCATTAAACACAGTGTTTATTGTTCCTCTGGCTCGCACTGCAGTCACTCTCTCAGCCATTTCACAAGCAGCCTGTTTGTTGATTGGACATTCATACGACTTGCACAATGTCTTACGCATAtcccaagaaaacaaacactcctAAAACTGACACCAGAAGCAATGCTCAGATTGTGGAAGATAACAGGAAGAAAACGAACTTGCTGAAAGACAACAGCTGGATCAAAAAGAATGTGGAAGAAGATGAACCCATTGAATTCGGTGTCGGCGGAGACCAGACCTCCCAGATCAAGACTACATTCTCCAATACAGTAAAAAACACTGTGGTTGAGCAAGCTAAGACAAGCACATCAGAGGTTCAGAATCCTAAAAAACCTGTCCAGGCCCAGGTCTCCAAAGAATCAGCCACCAAGGGaGCTACAAGTGTTTCTGCTACTGAAACACCAAAGACTGAGGTGACTAAAAAAGCCAGCATCAAGGAAAGCTCTAACGATGGTGACTATGATTTCATTAAGACTGACTCACTGAAGTCCCCCACCTCTGCTGACTATGATTTCATGAAGTCTGCCTCCCTGAAGTCCCCCACCTCCAGaacaacaacaagcTATAAAACTTACACCAGTACTGAAGACCTGCCGTCTACCATCACCACTAAAGTTTACAGCAGCTCTGAGAACCTGCCTTCTACAAGAACATCGAAGGTCTACACCAGTACTGAAGACCTGCCGTCTACCATCACAACTAAGGTGTACAGCAGCTCTGACAACCTGCCTTCTACAAGAACATCGAAGGTCTACACCAGTACTGAAAACCTGCCGTCTACTATCACCACTAAAGTTTACAGCAGCTCTGACAACCTGCCTTCGACAAGAACATCGAAGGTCTACACCAGCACTGAAAACCTGCCATCTACCATCACAACTAAGACTTACAGCAGCTCTGAGAACCTGCCTTCTACAAGAACATCGAAGATCTACACCAGTACTGAAGACCTGCCGTCTACCATCACAACTAAGACTTACAGCAGCTCTGAGAACCTGCCTTCTACAAGAACATCAAAAGTCTACACCAGCACTGAGAATCTGCCTTCTACAAGAACATCGAAACTCTACAGCAGTACTGAGGATCTGATTTCTACAAGAAGCTACTCCAGAAATAGTGAACCCAGCTATGACTATACGGATTCATCAAGCAGATCCAAAAGCTACTCCAGCAAGATGAGTGATTCCAGCAATCCACAGGATTACTATGAAGGTTCCATCTCATCCAAATCCATCCACACAGTTTATTCAACTTCAGACAGGACTATAATCGACAAAGACATGTGCACCTACTGCCGTAAACCTATCAACACCGAAGCAAAAATGATCCTGGATGATCTGCACATATGCTGTCATGCTTCTTGCTTCAAGTGCGAGGTCTGCAACAGCCCACTGGGAAACCTTAAAGCTGGAGATAGCATGTGGATTTACAGACGCTCTGTTCATTGCGAGAACTGCTTTGGCATTGCAAGAGataagTGGCATCGTTGAATTCAGAGATCCTGATGGTGTCAAATGTATGCAGATATTATATgtcaaaacatgcattttatatagtCATGAAAAAGCTACAAGGCAAGTTTAtagaaatatatgaaatataaaaattacagaaataGATCATAAACATGTTGAACACATAAACTATGCCATAATATTGCCTTGTAAATCTTTCTTATAGGTTGTGGGTCCATTACTTCCTGTaaccatgcatttaaatatcatCAAATATATGACGTGATTCAAAATATAGGTGGCTTTGTGCAACTATACTTATGTAATAGTATACATTTTAGGGCACTAAGAGTACTAACAGTGACTTTTTACGACCTTTGAACTATGATTAACTAACagtatattaacaaatattagTGGCTTGATTTGACTTGTTTCCTGAACTAGTAACTCAAATtgcattacaataaaacaatacaattataaataaataaaaaatctttcttaac

Function

GO: NA

KEGG:

id description
K24424 SCEL; sciellin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88779 lncRNA upstream 108406 18477043 ~ 18478028 (+) True G71038
TU88777 lncRNA upstream 118099 18465219 ~ 18468335 (+) True G71036
TU88649 lncRNA upstream 935432 17650771 ~ 17651002 (+) True G70938
TU88613 lncRNA upstream 1095827 17489826 ~ 17490607 (+) True G70908
TU88604 lncRNA upstream 1099384 17418439 ~ 17487050 (+) False AMCG00014553
TU88954 lncRNA downstream 79104 18688548 ~ 18692633 (+) True G71136
TU89012 lncRNA downstream 291781 18901225 ~ 18902161 (+) True G71183
TU89082 lncRNA downstream 438514 19047958 ~ 19048172 (+) True G71237
TU89148 lncRNA downstream 608873 19218317 ~ 19222919 (+) True G71283
TU89156 lncRNA downstream 608873 19218317 ~ 19222919 (+) False G71283
AMCG00014575 mRNA upstream 106402 18478409 ~ 18480032 (+) True AMCG00014575
AMCG00014573 mRNA upstream 111250 18470551 ~ 18475184 (+) True AMCG00014573
AMCG00014574 mRNA upstream 190834 18374644 ~ 18395600 (+) True AMCG00014574
AMCG00014569 mRNA upstream 254020 18324270 ~ 18332414 (+) True AMCG00014569
AMCG00014563 mRNA upstream 506094 18070534 ~ 18080340 (+) True AMCG00014563
AMCG00014580 mRNA downstream 1116 18610560 ~ 18624589 (+) True AMCG00014580
AMCG00014582 mRNA downstream 17115 18626559 ~ 18632690 (+) True AMCG00014582
AMCG00014586 mRNA downstream 27262 18636706 ~ 18638604 (+) True AMCG00014586
AMCG00014581 mRNA downstream 36416 18645860 ~ 18659061 (+) True AMCG00014581
AMCG00014584 mRNA downstream 52764 18662208 ~ 18667126 (+) True AMCG00014584
TU88725 other upstream 312074 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 1137981 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 2117321 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 2453632 16129525 ~ 16132802 (+) False AMCG00014508
TU88058 other upstream 2906646 15675631 ~ 15679788 (+) False AMCG00014490
TU89430 other downstream 4245898 22855342 ~ 22855646 (+) True G71525
TU90165 other downstream 9226059 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 9259259 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 9692929 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 11242006 29851450 ~ 29851821 (+) True G72605

Expression Profile