RNA id: AMCG00014585


Basic Information

Item Value
RNA id AMCG00014585
length 1350
RNA type mRNA
GC content 0.52
exon number 9
gene id AMCG00014585
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 18639812 ~ 18644670 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGAACTGGGCACGTTTGTGTAGCACGTATTTCTGCAGATGCAGTTTGGGCCATGCTGTGCCGGGACGCAATGTAAGGCTGCACGCATCCCGGACGCATGCTCTGCAGCAGCGGTGCCCCCCCCGCACCAGCGGCCCTGCACAGGCATTTGCAAGACACCAGCAACGGCAGTGCCACAGCAATCACCCAGAGCTGTTAAAGCAAGACACCGTGCAGACCTATTTGAATGgcctgatggaggagcagcagcTGATCGGCCGCAGGTTGCAGGACCCGGCGCTGAGCGACTGTGAGCGCAGAGGGCTGAGCCGGAGACAGCTCGACCTGTCCCCCTTGGCCAGTGCATTTCAAGAGCTGCAGTGTGCGGTACAAGACCTAGTGGAAATGGAAACGATTCTCCACAGTTCAGAGAGAGAAGATGACCAATTGCTGGCGCTAGTGAAGGAGGAACAAAATCAGATTGCGAAATGTATTGAAACGCTTCAAgggaaaCTGCTAGAGAAGTTGGTGCCGAGTGACAGACACGATGCCAGGGATGTTATCTTGGAGGTGGCAGCAGGAAGAACCACAGGAGGTGACATATGCCAACAGTTTACAAGAGAAATCTTTGAAATGTATCAGAATTTTGCAAGCTACAAAAATTGGGAGTTTGACGTTCTCAATTACACTCCAGCCGAGTATGGTGGATTGCATCATGCAGCTGCGAGGATTTCAGGGCAGAGGGTTTATAGGAATTTGAAGTATGAAGGTGGCACACACAGAGTTCAGAGGATCCCCGAGACTGGCCTGTCTTCCAGAATGCAGAGAATTCACACAGGAACCATGACAGTTATTGTGCTGCCCCAGCCCAATGAGGTCGATCTAAATATAGACTCCAAGGATTTGCGAATAGATACATTTAGATCCAAGGGAGCAGGTGGTCAGAGTGTCAATACAACAGACAGTGCCGTTCGGATTGTCCACATTCCCACTGGCAAGTACTTACATTGGATAACAGTCGAGTGCCAGCAGGAGCGTTCCCAGCTACAGAACAGGGACACCGCGATGAGGATGCTGAGAGCTAAAATGTATCGGCAAATAACAGACAGAGAAACCGAGCAAAGGCACAGCGCCCGCAAACTCCAGGTGGGAACCCGGTCCCAGTCAGAGAGAATCCGCACCTATAACTTCACTCAGGATAGAGTCAATGATCACAGGATCGGGTATGTTGCTCGAGATATCAAGGAGTTCCTGAGAGGAGGAGAGCCCCTGGATGAGCTGATCAGGGAGCTCCTGAAGTGTGCGCAGAAGGAAGCTCTACTCGAACTGATAGAAAACAGCAGCCAGAGAAAATCTGGGCACTTCTGA

Function

GO:

id name namespace
GO:0006415 translational termination biological_process
GO:0005737 cytoplasm cellular_component
GO:0016149 translation release factor activity, codon specific molecular_function

KEGG:

id description
K02835 prfA, MTRF1, MRF1; peptide chain release factor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88747 lncRNA downstream 308712 18329197 ~ 18331100 (-) True G71016
TU88673 lncRNA downstream 617717 18014826 ~ 18022095 (-) True AMCG00014567
TU88667 lncRNA downstream 635789 18003810 ~ 18004023 (-) True G70954
TU88648 lncRNA downstream 1023907 17600461 ~ 17615905 (-) False AMCG00014559
TU88625 lncRNA downstream 1191095 17446868 ~ 17448717 (-) False AMCG00014555
TU88951 lncRNA upstream 19594 18664264 ~ 18664631 (-) True G71133
TU88975 lncRNA upstream 24131 18668801 ~ 18669655 (-) True G71157
TU88981 lncRNA upstream 41828 18686498 ~ 18687346 (-) True G71160
TU89001 lncRNA upstream 206054 18850724 ~ 18851111 (-) True G71174
TU89007 lncRNA upstream 229935 18874605 ~ 18878253 (-) True G71179
AMCG00014579 mRNA downstream 82524 18489550 ~ 18557288 (-) True AMCG00014579
AMCG00014576 mRNA downstream 152532 18485261 ~ 18487280 (-) True AMCG00014576
AMCG00014577 mRNA downstream 161890 18475543 ~ 18477922 (-) True AMCG00014577
AMCG00014578 mRNA downstream 171530 18467410 ~ 18468282 (-) True AMCG00014578
AMCG00014570 mRNA downstream 316113 18318085 ~ 18323699 (-) True AMCG00014570
AMCG00014588 mRNA upstream 51405 18696075 ~ 18709409 (-) True AMCG00014588
AMCG00014589 mRNA upstream 76135 18720805 ~ 18766660 (-) True AMCG00014589
AMCG00014590 mRNA upstream 132106 18776776 ~ 18777608 (-) True AMCG00014590
AMCG00014593 mRNA upstream 287467 18932137 ~ 18946921 (-) True AMCG00014593
AMCG00014597 mRNA upstream 326766 18971436 ~ 18999017 (-) True AMCG00014597
TU87063 other downstream 6977319 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 7841665 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 9322645 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 10255588 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 10481222 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 9685069 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 10744620 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 13618497 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 13952792 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 13952792 32597462 ~ 32619149 (-) False G73127

Expression Profile