RNA id: AMCG00014595


Basic Information

Item Value
RNA id AMCG00014595
length 1768
RNA type mRNA
GC content 0.41
exon number 6
gene id AMCG00014595
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 18949313 ~ 18963043 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTGTCCAATGCGGCGTTCCGTACGTGGTTAAATGTCCTTGAGTCAGTGAGAGTAGAAAGCATGGCGAATGAAAATATAGGGATGGACGGGGCACTCAAATACCCTGAATACGCTCCCAAATCAAACAGCAGGAGCGATGCAGATATTGACAAAAGAGTAGGCGGGACGTTAATTGCTGTCGGTCTTGGCGTTGCAGCTGCAGCGTTTGCAGggCGATATGCATTCCAGCTCTGGAAACCTTTAGGACAAGCCATTTCTGAAACAGCGAAGAAAATGCCAGCTTCTGCTTTCTCTTCTTATTACAAAGGAGGATTTGAGCAGAAGATGACGAGACGAGAAGCCAGTCTGATTTTGGGTGTAAGCCCAACAAGCAACAAGATGAAGATAAGAGAGGCCCACAGAAGGATTATGGTTTTAAATCACCCTGATAAAGGTGGATCGCCCTATTTGGCAGCAAAAATCAACGAAGCGAAGGACCTTCTGGATTCTATCTCTCGGCAATAACAGTTTTTGTCACAAGATCAGCGGACAGCAGATGTTCATTTCCTCTTCAAAACTGACTCTCGTCCCTTACATTCCTTCGTAAAGGAATTGCACACAGAGGAAATATCAAAGCTGAATTTATTGTATGAACTGGGTCACAATGTGGTCTGTTTTCAGTACGTGTCCCTGCTGGACTGCTGCAGTAGAAATGCTACACATTGCCTCCGAGTCAACAGGAGGAAACTGACTGAAGCACGGTCTTGTCATTTTTCATCTGATTTTAATGATCCCGGTTACTAAGGTGCACTTTATTAGGAAGGCTGCCGTGAGTGTGCCAGGATGTGTAGACATACTAGCCAGTTTGAATTACTCCCAGTGTTTTTTGAGGGTTGTGAAGCAGCACTAATCTATCCTGATAACTGAGACTGAATGTAATGAAGATTGTCCATGTCTGAAGGCCTGCGGAAAAGAATATCACTTATTTTAGatacagaaatagttatgcAAGAAGATCCATTTACCCTTTGACGGGAGCAAAATTAAACCTGCTCATCTATATTCATGgtgcttttacatttgtaaagaaGTGGATGCTTAggttttaagtttaaataaagagacacaaatcaaaacaaatactaaGAATGGTCCAAAGCAGGAATTATGAAACACTGGGAAAACTGCTTGGCACTTAACCTTCGTCTAACATTAATAGCGTCTCATTGCAGCACACTGgaaaaatgcttcaaaactaaTGTTAAATCTTCTAGAACTGACAACATGTGAACACAGACCTGCATGGCAGAGCACCACTGTGTCTTCCATTTGTGCTCTTAAAGTGCACATACTGTATTTtcagcaataaaaaaacaatagctcGCTTGCTTTGTTTCTCATCATTTTGTGGGTGATACACAGATGTTGAGTGCACTTTGTATTCAGTCATTAACCTGTGCTCAGTAAGTTTCCTGCTCCCCCAGCCCTGCAGTCTTTTAATCTATCCATGgccaatattaaaatattcttaaatatgaacGTCTGGTGATATTCTGTGTTACATTAGTGGAGTCATGTGACTGGAGACCCAGCCCTTTCAAGCTATATTTTCCTATCTCTACAAGTATTGGAAGCAGATGTCTATTTGTGTCTAGACCCGGCGATTTCATTGTTTGGCGTTTTACTGGTTGTTGCGCTTCACTTCCAAAGATGAAGGTTATGAAGTTATTTGAGTTTGCTGTATAATGTATCAaactttaatcaaataaatgtgttgttttcctgGGA

Function

GO:

id name namespace
GO:0048793 pronephros development biological_process

KEGG:

id description
K09535 DNAJC15; DnaJ homolog subfamily C member 15

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89012 lncRNA upstream 47152 18901225 ~ 18902161 (+) True G71183
TU88954 lncRNA upstream 256680 18688548 ~ 18692633 (+) True G71136
TU88779 lncRNA upstream 471285 18477043 ~ 18478028 (+) True G71038
TU88777 lncRNA upstream 480978 18465219 ~ 18468335 (+) True G71036
TU88649 lncRNA upstream 1298311 17650771 ~ 17651002 (+) True G70938
TU89082 lncRNA downstream 84915 19047958 ~ 19048172 (+) True G71237
TU89148 lncRNA downstream 255274 19218317 ~ 19222919 (+) True G71283
TU89156 lncRNA downstream 255274 19218317 ~ 19222919 (+) False G71283
TU89157 lncRNA downstream 255274 19218317 ~ 19222919 (+) False G71283
TU89246 lncRNA downstream 961859 19924902 ~ 19925198 (+) True G71362
AMCG00014594 mRNA upstream 49113 18889772 ~ 18900200 (+) True AMCG00014594
AMCG00014596 mRNA upstream 71040 18853308 ~ 18878273 (+) True AMCG00014596
AMCG00014591 mRNA upstream 103342 18803406 ~ 18845971 (+) True AMCG00014591
AMCG00014592 mRNA upstream 162786 18782057 ~ 18786527 (+) True AMCG00014592
AMCG00014587 mRNA upstream 274981 18668806 ~ 18674332 (+) True AMCG00014587
AMCG00014598 mRNA downstream 82640 19045683 ~ 19047641 (+) True AMCG00014598
AMCG00014599 mRNA downstream 85250 19048293 ~ 19056463 (+) True AMCG00014599
AMCG00014607 mRNA downstream 221236 19184279 ~ 19190953 (+) True AMCG00014607
AMCG00014613 mRNA downstream 230376 19193419 ~ 19196839 (+) True AMCG00014613
AMCG00014612 mRNA downstream 251233 19214276 ~ 19216333 (+) True AMCG00014612
TU88725 other upstream 674953 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 1500860 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 2480200 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 2816511 16129525 ~ 16132802 (+) False AMCG00014508
TU88058 other upstream 3269525 15675631 ~ 15679788 (+) False AMCG00014490
TU89430 other downstream 3892299 22855342 ~ 22855646 (+) True G71525
TU90165 other downstream 8872460 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 8905660 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 9339330 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 10888407 29851450 ~ 29851821 (+) True G72605

Expression Profile